sidier: SIDIER: Substitution and Indel Distances to Infer Evolutionary Relationships

SIDIER provides functions for reading and writing fasta sequences, finding unique haplotypes, estimating genetic distances based on gap positions and lengths, combining distance matrices and estimating and plotting percolation networks.

Version: 2.3
Depends: R (≥ 2.10.1)
Imports: ape, network, igraph
Published: 2013-08-09
Author: A.J. Munoz-Pajares
Maintainer: A.J. Munoz-Pajares <ajesusmp at ugr.es>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: sidier results

Downloads:

Reference manual: sidier.pdf
Package source: sidier_2.3.tar.gz
Windows binaries: r-devel: sidier_2.3.zip, r-release: sidier_2.3.zip, r-oldrel: sidier_2.3.zip
OS X Snow Leopard binaries: r-release: sidier_2.3.tgz, r-oldrel: sidier_2.3.tgz
OS X Mavericks binaries: r-release: sidier_2.3.tgz
Old sources: sidier archive