[aut],
Ray Tobler [ctb],
Christian Huber
[ctb, cre]Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).
| Version: | 1.1.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | bootSVD, data.table, foreach, Rfast, RSpectra, vegan, vroom, Rcpp |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2021-03-04 |
| Author: | Salvador Herrando-Perez
[aut],
Ray Tobler [ctb],
Christian Huber
[ctb, cre] |
| Maintainer: | Christian Huber <christian.domitian.huber at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | yes |
| Language: | en-GB |
| Materials: | README NEWS |
| CRAN checks: | smartsnp results |
| Reference manual: | smartsnp.pdf |
| Package source: | smartsnp_1.1.0.tar.gz |
| Windows binaries: | r-devel: smartsnp_1.1.0.zip, r-release: smartsnp_1.1.0.zip, r-oldrel: smartsnp_1.1.0.zip |
| macOS binaries: | r-release: smartsnp_1.1.0.tgz, r-oldrel: smartsnp_1.1.0.tgz |
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