surface: Fitting Hansen Models to Investigate Convergent Evolution

SURFACE is a data-driven phylogenetic comparative method for fitting stabilizing selection models to continuous trait data, building on the ouch package. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak.

Version: 0.4-1
Depends: R (≥ 2.6), ape, ouch, MASS, geiger
Suggests: igraph
Published: 2014-02-14
Author: Travis Ingram
Maintainer: Travis Ingram <travis.ingram at otago.ac.nz>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://www.people.fas.harvard.edu/~ingram/web/surface.html
NeedsCompilation: no
Citation: surface citation info
CRAN checks: surface results

Downloads:

Reference manual: surface.pdf
Vignettes: Introduction to surface
Package source: surface_0.4-1.tar.gz
OS X binary: surface_0.4-1.tgz
Windows binary: surface_0.4-1.zip
Old sources: surface archive