sybilccFBA: Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT)

implement cost constrained flux balance analysis as described in Adadi, R., Volkmer, B., Milo, R., Heinemann, M., & Shlomi, T. (2012). Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters, 8(7). doi:10.1371/journal.pcbi.1002575. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010)

Version: 1.0.0
Depends: R (≥ 2.10.0), sybil, Matrix
Suggests: cplexAPI (≥ 1.2.6), glpkAPI (≥ 1.2.1)
Published: 2014-04-02
Author: Abdelmoneim Amer Desouki [aut, cre]
Maintainer: Abdelmoneim Amer Desouki <abdelmoneim.amer at uni-duesseldorf.de>
License: GPL-3
NeedsCompilation: no
Citation: NA
Materials: NA
CRAN checks: sybilccFBA results

Downloads:

Reference manual: sybilccFBA.pdf
Package source: sybilccFBA_1.0.0.tar.gz
Windows binaries: r-devel: sybilccFBA_1.0.0.zip, r-release: sybilccFBA_1.0.0.zip, r-oldrel: sybilccFBA_1.0.0.zip
OS X Snow Leopard binaries: r-release: sybilccFBA_1.0.0.tgz, r-oldrel: sybilccFBA_1.0.0.tgz
OS X Mavericks binaries: r-release: sybilccFBA_1.0.0.tgz