synbreed: Framework for the Analysis of Genomic Prediction Data using R

A collection of functions required for genomic prediction which were developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). This covers data processing, data visualization, and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats in plant and animal breeding. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).

Version: 0.11-10
Depends: R (≥ 2.14), doBy, BLR, regress (≥ 1.3-8), abind
Imports: igraph, lattice, MASS, LDheatmap, qtl
Suggests: synbreedData (≥ 1.5)
Published: 2015-06-16
Author: Valentin Wimmer, Hans-Juergen Auinger, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer <Valentin.Wimmer at kws.com>
License: GPL-3
URL: http://synbreed.r-forge.r-project.org/
NeedsCompilation: no
Citation: synbreed citation info
Materials: NEWS
CRAN checks: synbreed results

Downloads:

Reference manual: synbreed.pdf
Package source: synbreed_0.11-10.tar.gz
Windows binaries: r-devel: synbreed_0.11-10.zip, r-release: synbreed_0.11-10.zip, r-oldrel: synbreed_0.11-10.zip
OS X Snow Leopard binaries: r-oldrel: synbreed_0.10-5.tgz
OS X Mavericks binaries: r-release: synbreed_0.11-10.tgz
Old sources: synbreed archive

Reverse dependencies:

Reverse suggests: heritability