treescape: Statistical Exploration of Landscapes of Phylogenetic Trees

Tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using 'treescapeServer()'.

Version: 1.10.18
Depends: R (≥ 3.1.2), ape, ade4
Imports: adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, phangorn, Rcpp, rgl, RLumShiny, scatterD3, shiny, shinyBS, utils
LinkingTo: Rcpp
Suggests: igraph, RColorBrewer, ggplot2, testthat, knitr, rmarkdown
Published: 2016-12-08
Author: Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut]
Maintainer: Michelle Kendall <m.kendall at imperial.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: README
CRAN checks: treescape results

Downloads:

Reference manual: treescape.pdf
Vignettes: treescape worked example: Dengue trees
treescape worked example: Transmission trees
treescape: exploration of landscapes of phylogenetic trees
Package source: treescape_1.10.18.tar.gz
Windows binaries: r-devel: treescape_1.10.18.zip, r-release: treescape_1.10.18.zip, r-oldrel: treescape_1.10.18.zip
OS X El Capitan binaries: r-release: treescape_1.10.18.tgz
OS X Mavericks binaries: r-oldrel: treescape_1.10.18.tgz
Old sources: treescape archive

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