treespace: Statistical Exploration of Landscapes of Phylogenetic Trees

Tools for the exploration of distributions of phylogenetic trees. This package includes a 'shiny' interface which can be started from R using treespaceServer().

Version: 1.1.2
Depends: R (≥ 3.4.0), ape, ade4
Imports: adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, parallel, phangorn, phytools, Rcpp, RLumShiny, scatterD3, shiny, shinyBS, utils
LinkingTo: Rcpp
Suggests: ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rgl, rmarkdown, testthat
Published: 2018-02-22
Author: Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut]
Maintainer: Michelle Kendall <michelle.kendall at>
License: MIT + file LICENSE
NeedsCompilation: yes
Materials: README
CRAN checks: treespace results


Reference manual: treespace.pdf
Vignettes: treespace worked example: Dengue trees
treespace worked example: Transmission trees
treespace: exploration of landscapes of phylogenetic trees
treespace worked example: comparing by tip categories
Package source: treespace_1.1.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: treespace_1.1.2.tgz
OS X Mavericks binaries: r-oldrel: treespace_1.0.1.tgz
Old sources: treespace archive


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