vqtl: Genome Scans to Accommodate and Target Genetic and Non-Genetic Effects on Trait Variance in Test Crosses

In recognition that there are many factors (genetic loci, macro- genetic factors such as sex, and environmental factors) that influence the extent of environmental variation, the 'vqtl' package conducts genome scans that accommodate and target these factors. The main functions of this package, scanonevar() and scanonevar.perm() take as input a cross object from the popular 'qtl' package.

Version: 1.2.0
Depends: R (≥ 3.3.0)
Imports: doParallel, foreach, iterators, parallel, knitr, dplyr, qtl, dglm, evd, ggplot2, gtools, lazyeval, stringr, tidyr, testthat
Suggests: covr
Published: 2017-06-14
Author: Robert Corty [aut, cre]
Maintainer: Robert Corty <rcorty at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: vqtl results


Reference manual: vqtl.pdf
Vignettes: "vQTL Vignette"
Package source: vqtl_1.2.0.tar.gz
Windows binaries: r-devel: vqtl_1.2.0.zip, r-release: vqtl_1.2.0.zip, r-oldrel: vqtl_1.2.0.zip
OS X El Capitan binaries: r-release: vqtl_1.2.0.tgz
OS X Mavericks binaries: r-oldrel: vqtl_1.2.0.tgz
Old sources: vqtl archive


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