R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.
|Depends:||R (≥ 2.14.0)|
|Maintainer:||Menachem Fromer <fromer at broadinstitute.org>|
|CRAN checks:||xhmmScripts results|
|Windows binaries:||r-devel: xhmmScripts_1.1.zip, r-release: xhmmScripts_1.1.zip, r-oldrel: xhmmScripts_1.1.zip|
|OS X Snow Leopard binaries:||r-oldrel: xhmmScripts_1.1.tgz|
|OS X Mavericks binaries:||r-release: xhmmScripts_1.1.tgz|
|Old sources:||xhmmScripts archive|