xhmmScripts: XHMM R scripts

R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.

Version: 1.1
Depends: R (≥ 2.14.0)
Imports: gplots, plotrix
Published: 2014-06-15
Author: Menachem Fromer
Maintainer: Menachem Fromer <fromer at broadinstitute.org>
BugReports: http://groups.google.com/a/broadinstitute.org/group/xhmm-users
License: GPL-2
URL: http://atgu.mgh.harvard.edu/xhmm
NeedsCompilation: no
CRAN checks: xhmmScripts results

Downloads:

Reference manual: xhmmScripts.pdf
Package source: xhmmScripts_1.1.tar.gz
Windows binaries: r-devel: xhmmScripts_1.1.zip, r-release: xhmmScripts_1.1.zip, r-oldrel: xhmmScripts_1.1.zip
OS X Snow Leopard binaries: r-oldrel: xhmmScripts_1.1.tgz
OS X Mavericks binaries: r-release: xhmmScripts_1.1.tgz
Old sources: xhmmScripts archive