yCrypticRNAs: Cryptic Transcription Analysis in Yeast

Calculates cryptic scores for genes using the ratio (Cheung et al., 2008), the 3' enrichment method (DeGennaro et al., 2013) and the probabilistic method. It also provide methods to estimates cryptic transcription start sites.

Version: 0.99.2
Depends: R (≥ 3.2.0)
Imports: biomaRt (≥ 2.24.1), data.table (≥ 1.9.6), IRanges (≥ 2.2.9), mclust (≥ 5.1), MESS (≥ 0.3-2), parallel (≥ 3.2.2), Rcpp (≥ 0.12.1), Rsamtools (≥ 1.20.5)
LinkingTo: Rcpp
Suggests: knitr, testthat, rmarkdown
Published: 2016-02-08
Author: Nicole Uwimana, Benjamin Haibe-Kains, Francois Robert
Maintainer: Nicole Uwimana <nicole.uwimana at gmail.com>
BugReports: https://bitbucket.org/nuwimana/ycrypticrnas/issues
License: GPL-2
URL: https://bitbucket.org/nuwimana/ycrypticrnas
NeedsCompilation: yes
CRAN checks: yCrypticRNAs results


Reference manual: yCrypticRNAs.pdf
Vignettes: yCrypticRNAs
Package source: yCrypticRNAs_0.99.2.tar.gz
Windows binaries: r-devel: yCrypticRNAs_0.99.2.zip, r-release: yCrypticRNAs_0.99.2.zip, r-oldrel: yCrypticRNAs_0.99.2.zip
OS X Mavericks binaries: r-release: yCrypticRNAs_0.99.2.tgz, r-oldrel: yCrypticRNAs_0.99.0.tgz
Old sources: yCrypticRNAs archive


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