CRAN Package Check Results for Package Brundle

Last updated on 2019-04-22 09:49:14 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.8 47.60 492.87 540.47 ERROR
r-devel-linux-x86_64-debian-gcc 1.0.8 40.71 383.51 424.22 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.8 743.92 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0.8 716.29 ERROR
r-devel-windows-ix86+x86_64 1.0.8 34.00 6.00 40.00 ERROR
r-patched-linux-x86_64 1.0.8 47.28 476.75 524.03 ERROR
r-patched-solaris-x86 1.0.8 1022.20 ERROR
r-release-linux-x86_64 1.0.8 21.48 410.94 432.42 OK
r-release-windows-ix86+x86_64 1.0.8 62.00 539.00 601.00 OK
r-release-osx-x86_64 1.0.8 ERROR
r-oldrel-windows-ix86+x86_64 1.0.8 63.00 496.00 559.00 OK
r-oldrel-osx-x86_64 1.0.8 ERROR

Check Details

Version: 1.0.8
Check: examples
Result: ERROR
    Running examples in 'Brundle-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: jg.plotDeSeq
    > ### Title: jg.plotDeSeq
    > ### Aliases: jg.plotDeSeq
    > ### Keywords: DESeq2 data plot
    >
    > ### ** Examples
    >
    > data(jg.experimentResultsDeseq,package="Brundle")
    > jg.plotDeSeq(jg.experimentResultsDeseq,
    + p=0.01,
    + title.main="Fold-change in ER binding",
    + flip=TRUE
    + )
    Error in validObject(.Object) :
     invalid class "DESeqResults" object: slots in class definition but not in object: "priorInfo"
    Calls: jg.plotDeSeq ... replaceCOLS -> initialize -> initialize -> validObject
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.0.8
Check: examples
Result: ERROR
    Running examples in ‘Brundle-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: jg.plotDeSeq
    > ### Title: jg.plotDeSeq
    > ### Aliases: jg.plotDeSeq
    > ### Keywords: DESeq2 data plot
    >
    > ### ** Examples
    >
    > data(jg.experimentResultsDeseq,package="Brundle")
    > jg.plotDeSeq(jg.experimentResultsDeseq,
    + p=0.01,
    + title.main="Fold-change in ER binding",
    + flip=TRUE
    + )
    Error in validObject(.Object) :
     invalid class “DESeqResults” object: slots in class definition but not in object: "priorInfo"
    Calls: jg.plotDeSeq ... replaceCOLS -> initialize -> initialize -> validObject
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.0.8
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-devel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.8
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘DiffBind’ ‘Rsamtools’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64