Last updated on 2017-07-21 07:46:09.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2 | 6.48 | 84.08 | 90.56 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.2 | 5.94 | 82.48 | 88.43 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.2 | 199.58 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2 | 192.03 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 2.2 | 39.00 | 215.00 | 254.00 | OK | |
| r-patched-linux-x86_64 | 2.2 | 5.66 | 83.84 | 89.50 | NOTE | |
| r-patched-solaris-x86 | 2.2 | 222.60 | OK | |||
| r-release-linux-x86_64 | 2.2 | 5.72 | 83.77 | 89.48 | NOTE | |
| r-release-windows-ix86+x86_64 | 2.2 | 29.00 | 215.00 | 244.00 | OK | |
| r-release-osx-x86_64 | 2.2 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 2.2 | 39.00 | 169.00 | 208.00 | OK | |
| r-oldrel-osx-x86_64 | 2.2 | OK |
Version: 2.2
Check: compiled code
Result: NOTE
File ‘CNVassoc/libs/CNVassoc.so’:
Found no call to: ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘CNVtools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
‘CGHcall’ ‘CGHregions’ ‘CNVtools’ ‘Biobase’ ‘CGHbase’
Flavor: r-release-osx-x86_64
Version: 2.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘CGHcall’
Flavor: r-release-osx-x86_64
Version: 2.2
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘CNVassoc_vignette.Rnw’
...
> data(NeveCalled)
> probs <- getProbs(NeveCalled)
Loading required package: CGHbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘CGHbase’
When sourcing ‘CNVassoc_vignette.R’:
Error: unable to find required package ‘CGHbase’
Execution halted
Flavor: r-release-osx-x86_64
Version: 2.2
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Loading required package: CNVassocData
Loading required package: mixdist
Loading required package: mclust
Package 'mclust' version 5.2.3
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: survival
Loading required package: CGHbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘CGHbase’
Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
chunk 40
Error in .requirePackage(package) :
unable to find required package ‘CGHbase’
Execution halted
Flavor: r-release-osx-x86_64