CRAN Package Check Results for Package HCT

Last updated on 2020-09-19 00:50:07 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 11.76 145.83 157.59 OK
r-devel-linux-x86_64-debian-gcc 0.1.0 10.35 112.87 123.22 OK
r-devel-linux-x86_64-fedora-clang 0.1.0 194.62 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.0 209.47 OK
r-devel-windows-ix86+x86_64 0.1.0 32.00 146.00 178.00 ERROR
r-patched-linux-x86_64 0.1.0 8.56 140.78 149.34 OK
r-patched-solaris-x86 0.1.0 218.00 NOTE
r-release-linux-x86_64 0.1.0 10.32 142.29 152.61 OK
r-release-macos-x86_64 0.1.0 NOTE
r-release-windows-ix86+x86_64 0.1.0 31.00 181.00 212.00 ERROR
r-oldrel-macos-x86_64 0.1.0 NOTE
r-oldrel-windows-ix86+x86_64 0.1.0 27.00 176.00 203.00 ERROR

Check Details

Version: 0.1.0
Check: installed package size
Result: NOTE
     installed size is 10.1Mb
     sub-directories of 1Mb or more:
     data 10.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [59s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > testthat::context("hct")
     > Sys.setenv("R_TESTS" = "")
     > library(HCT)
     Loading required package: rstan
     Loading required package: StanHeaders
     Loading required package: ggplot2
     rstan (Version 2.21.2, GitRev: 2e1f913d3ca3)
     For execution on a local, multicore CPU with excess RAM we recommend calling
     options(mc.cores = parallel::detectCores()).
     To avoid recompilation of unchanged Stan programs, we recommend calling
     rstan_options(auto_write = TRUE)
     Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file
    
     Attaching package: 'HCT'
    
     The following object is masked from 'package:base':
    
     summary
    
     > als=data.frame(
     + estimate=c(-1.13, -1.01, -0.96, -1, -1.04, -1, -0.83, -1.04, -0.99, -1.05,
     + -1.14, -1.08, -0.92, -1.16, -0.93, -0.99),
     + SE=c(0.05, 0.04, 0.16, 0.12, 0.05, 0.11, 0.02, 0.03, 0.03, 0.06,
     + 0.06, 0.03, 0.05, 0.04, 0.06, 0.05),
     + N=c(350, 730, 83, 83, 287, 90, 1193, 859, 583, 227, 279, 510, 185,
     + 468, 127, 206))
     > ts=hct(als,'estimate','SE','N',rseed=322)
     DIAGNOSTIC(S) FROM PARSER:
     Info: Comments beginning with # are deprecated. Please use // in place of # for line comments.
    
     make cmd is
     make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/etc/x64/Makevars.site" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file28a24389a7267.dll" WIN=64 TCLBIN=64 OBJECTS="file28a24389a7267.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpgpTHnS'
     if test "zfile28a24389a7267.o" != "z"; then \
     if test -e "file28a24389a7267-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file28a24389a7267.dll file28a24389a7267-win.def file28a24389a7267.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file28a24389a7267.dll file28a24389a7267-win.def file28a24389a7267.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file28a24389a7267.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file28a24389a7267.dll tmp.def file28a24389a7267.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file28a24389a7267.dll tmp.def file28a24389a7267.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpgpTHnS'
     Error in compileCode(f, code, language = language, verbose = verbose) :
     D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file28a24389a7267.o:file28a24389a7267.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file28a24389a7267.o:file28a24389a7267.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file28a24389a7267.o:file28a24389a7267.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_
     Calls: hct ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
     Error in sink(type = "output") : invalid connection
     Calls: hct ... <Anonymous> -> stan_model -> cxxfunctionplus -> sink
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [75s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > testthat::context("hct")
     > Sys.setenv("R_TESTS" = "")
     > library(HCT)
     Loading required package: rstan
     Loading required package: StanHeaders
     Loading required package: ggplot2
     rstan (Version 2.21.2, GitRev: 2e1f913d3ca3)
     For execution on a local, multicore CPU with excess RAM we recommend calling
     options(mc.cores = parallel::detectCores()).
     To avoid recompilation of unchanged Stan programs, we recommend calling
     rstan_options(auto_write = TRUE)
     Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file
    
     Attaching package: 'HCT'
    
     The following object is masked from 'package:base':
    
     summary
    
     > als=data.frame(
     + estimate=c(-1.13, -1.01, -0.96, -1, -1.04, -1, -0.83, -1.04, -0.99, -1.05,
     + -1.14, -1.08, -0.92, -1.16, -0.93, -0.99),
     + SE=c(0.05, 0.04, 0.16, 0.12, 0.05, 0.11, 0.02, 0.03, 0.03, 0.06,
     + 0.06, 0.03, 0.05, 0.04, 0.06, 0.05),
     + N=c(350, 730, 83, 83, 287, 90, 1193, 859, 583, 227, 279, 510, 185,
     + 468, 127, 206))
     > ts=hct(als,'estimate','SE','N',rseed=322)
     DIAGNOSTIC(S) FROM PARSER:
     Info: Comments beginning with # are deprecated. Please use // in place of # for line comments.
    
     make cmd is
     make -f "D:/RCompile/recent/R-40~1.2/etc/x64/Makeconf" -f "D:/RCompile/recent/R-40~1.2/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-40~1.2/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file2a5c47e32233a.dll" WIN=64 TCLBIN=64 OBJECTS="file2a5c47e32233a.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpOowcPL'
     if test "zfile2a5c47e32233a.o" != "z"; then \
     if test -e "file2a5c47e32233a-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2a5c47e32233a.dll file2a5c47e32233a-win.def file2a5c47e32233a.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2a5c47e32233a.dll file2a5c47e32233a-win.def file2a5c47e32233a.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file2a5c47e32233a.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2a5c47e32233a.dll tmp.def file2a5c47e32233a.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2a5c47e32233a.dll tmp.def file2a5c47e32233a.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpOowcPL'
     Error in compileCode(f, code, language = language, verbose = verbose) :
     D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2a5c47e32233a.o:file2a5c47e32233a.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2a5c47e32233a.o:file2a5c47e32233a.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2a5c47e32233a.o:file2a5c47e32233a.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler
     Calls: hct ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
     Error in sink(type = "output") : invalid connection
     Calls: hct ... <Anonymous> -> stan_model -> cxxfunctionplus -> sink
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [70s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > testthat::context("hct")
     > Sys.setenv("R_TESTS" = "")
     > library(HCT)
     Loading required package: rstan
     Loading required package: StanHeaders
     Loading required package: ggplot2
     rstan (Version 2.21.2, GitRev: 2e1f913d3ca3)
     For execution on a local, multicore CPU with excess RAM we recommend calling
     options(mc.cores = parallel::detectCores()).
     To avoid recompilation of unchanged Stan programs, we recommend calling
     rstan_options(auto_write = TRUE)
     Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file
    
     Attaching package: 'HCT'
    
     The following object is masked from 'package:base':
    
     summary
    
     > als=data.frame(
     + estimate=c(-1.13, -1.01, -0.96, -1, -1.04, -1, -0.83, -1.04, -0.99, -1.05,
     + -1.14, -1.08, -0.92, -1.16, -0.93, -0.99),
     + SE=c(0.05, 0.04, 0.16, 0.12, 0.05, 0.11, 0.02, 0.03, 0.03, 0.06,
     + 0.06, 0.03, 0.05, 0.04, 0.06, 0.05),
     + N=c(350, 730, 83, 83, 287, 90, 1193, 859, 583, 227, 279, 510, 185,
     + 468, 127, 206))
     > ts=hct(als,'estimate','SE','N',rseed=322)
     DIAGNOSTIC(S) FROM PARSER:
     Info: Comments beginning with # are deprecated. Please use // in place of # for line comments.
    
     make cmd is
     make -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-36~1.3/share/make/winshlib.mk" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="file29e186de91db.dll" WIN=64 TCLBIN=64 OBJECTS="file29e186de91db.o"
    
     make would use
     make[1]: Entering directory `/cygdrive/d/temp/RtmpUTVD36'
     if test "zfile29e186de91db.o" != "z"; then \
     if test -e "file29e186de91db-win.def"; then \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file29e186de91db.dll file29e186de91db-win.def file29e186de91db.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file29e186de91db.dll file29e186de91db-win.def file29e186de91db.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/nm file29e186de91db.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file29e186de91db.dll tmp.def file29e186de91db.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file29e186de91db.dll tmp.def file29e186de91db.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory `/cygdrive/d/temp/RtmpUTVD36'
     Error in compileCode(f, code, language = language, verbose = verbose) :
     file29e186de91db.o:file29e186de91db.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file29e186de91db.o:file29e186de91db.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file29e186de91db.o:file29e186de91db.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file29e186de91db.o:file29e186de91db.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file29e186de91db.o:file29e186de91db.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_
     Calls: hct ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
     Error in sink(type = "output") : invalid connection
     Calls: hct ... <Anonymous> -> stan_model -> cxxfunctionplus -> sink
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64