Last updated on 2021-04-12 23:48:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 3.82 | 33.89 | 37.71 | OK | --no-examples --no-tests --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 3.43 | 26.55 | 29.98 | OK | --no-examples --no-tests --no-vignettes |
| r-devel-windows-ix86+x86_64 | 0.0.1 | 8.00 | 54.00 | 62.00 | OK | --no-examples --no-tests --no-vignettes |
| r-devel-windows-x86_64-gcc10-UCRT | 0.0.1 | ERROR | ||||
| r-patched-linux-x86_64 | 0.0.1 | 3.71 | 31.87 | 35.58 | OK | --no-examples --no-tests --no-vignettes |
| r-release-linux-x86_64 | 0.0.1 | 3.46 | 32.31 | 35.77 | OK | --no-examples --no-tests --no-vignettes |
| r-release-macos-x86_64 | 0.0.1 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.0.1 | 6.00 | 54.00 | 60.00 | OK | --no-examples --no-tests --no-vignettes |
| r-oldrel-macos-x86_64 | 0.0.1 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.0.1 | 8.00 | 37.00 | 45.00 | OK | --no-examples --no-tests --no-vignettes |
Version: 0.0.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
'coda' 'lattice'
All declared Imports should be used.
Flavors: r-devel-windows-x86_64-gcc10-UCRT, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in 'IRATER-Ex.R' failed
The error most likely occurred in:
> ### Name: clean.admb
> ### Title: delete IRATE (ADMB) run files
> ### Aliases: clean.admb clean.IRATE
>
> ### ** Examples
>
> example.setup <- IRATE.examples()
> new.setup <- new.setup.path <- example.setup[1] # select old IRATE setup to reparameterize
> print(new.setup) # print setup name to be run
[1] "HoenigNonMixing"
> old.setup.path <- system.file(paste0("IRATE.examples/",new.setup,".dat"), package = "IRATER")
>
> system(paste("mkdir -p ",new.setup.path)) # create run folder for new setup
[1] 0
> system(paste("cp",old.setup.path, new.setup.path)) # copy old setup in new run folder
[1] 0
> setwd(new.setup.path)
>
> run.IRATE(new.setup) # compile and run setup
Error in R2admb::compile_admb(setup.file, safe = safe, re = re, verbose = verbose, :
base admb command failed: run setup_admb(), or check ADMB installation
Calls: run.IRATE -> <Anonymous>
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘IRATER-Ex.R’ failed
The error most likely occurred in:
> ### Name: clean.admb
> ### Title: delete IRATE (ADMB) run files
> ### Aliases: clean.admb clean.IRATE
>
> ### ** Examples
>
> example.setup <- IRATE.examples()
> new.setup <- new.setup.path <- example.setup[1] # select old IRATE setup to reparameterize
> print(new.setup) # print setup name to be run
[1] "HoenigNonMixing"
> old.setup.path <- system.file(paste0("IRATE.examples/",new.setup,".dat"), package = "IRATER")
>
> system(paste("mkdir -p ",new.setup.path)) # create run folder for new setup
> system(paste("cp",old.setup.path, new.setup.path)) # copy old setup in new run folder
> setwd(new.setup.path)
>
> run.IRATE(new.setup) # compile and run setup
sh: admb: command not found
Error in R2admb::compile_admb(setup.file, safe = safe, re = re, verbose = verbose, :
base admb command failed: run setup_admb(), or check ADMB installation
Calls: run.IRATE -> <Anonymous>
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64