Last updated on 2023-03-20 12:51:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4-2 | NOTE | ||||
| r-devel-linux-x86_64-debian-gcc | 0.4-2 | 5.06 | 63.23 | 68.29 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4-2 | 130.24 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4-2 | 142.17 | NOTE | |||
| r-devel-windows-x86_64 | 0.4-2 | 38.00 | 161.00 | 199.00 | NOTE | |
| r-patched-linux-x86_64 | 0.4-2 | 5.70 | 93.53 | 99.23 | NOTE | |
| r-release-linux-x86_64 | 0.4-2 | 7.10 | 94.07 | 101.17 | NOTE | |
| r-release-macos-arm64 | 0.4-2 | 55.00 | NOTE | |||
| r-release-macos-x86_64 | 0.4-2 | 63.00 | NOTE | |||
| r-release-windows-x86_64 | 0.4-2 | 12.00 | 162.00 | 174.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.4-2 | 41.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.4-2 | 70.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.4-2 | 17.00 | 164.00 | 181.00 | NOTE |
Version: 0.4-2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.4-2
Check: examples
Result: ERROR
Running examples in ‘MPTmultiverse-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: check_results
> ### Title: Check results from MPTmultiverse
> ### Aliases: check_results write_check_results check_set
>
> ### ** Examples
>
> load(file = system.file("extdata", "results_bayen_kuhlmann.RData",
+ package = "MPTmultiverse"))
> ## prints checks to console
> check_results(results)
## MPTinR: no pooling
Based on asymptotic method, proportion of participants with non-identified parameters:
condition core proportion
1 load FALSE 0
2 load TRUE 0.0417
3 no_load FALSE 0.0208
4 no_load TRUE 0.0208
Based on asymptotic CIs, table of non-identified parameters:
condition core parameter n
1 load TRUE d 2
2 no_load FALSE g 1
3 no_load TRUE d 1
Based on PB/MLE method, proportion of participants with non-identified parameters:
condition core proportion
1 load FALSE 0
2 load TRUE 0.354
3 no_load FALSE 0.0625
4 no_load TRUE 0
Based on PB/MLE CIs, table of non-identified parameters:
condition core parameter n
1 load TRUE d 17
2 no_load FALSE g 3
Based on NPB/MLE method, proportion of participants with non-identified parameters:
condition core proportion
1 load FALSE 0
2 load TRUE 0.354
3 no_load FALSE 0.0625
4 no_load TRUE 0
Based on NPB/MLE CIs, table of non-identified parameters:
condition core parameter n
1 load TRUE d 17
2 no_load FALSE g 3
## MPTinR: complete pooling
No convergence problems.
## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // no // TreeBUGS // simple:
All Rhat < 1.05 .
All effect sample sizes > 2000 .
## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // complete // TreeBUGS // simple:
All Rhat < 1.05 .
All effect sample sizes > 2000 .
## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // trait:
All Rhat < 1.05 .
All effect sample sizes > 2000 .
## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // trait_uncorrelated:
All Rhat < 1.05 .
All effect sample sizes > 2000 .
## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // beta:
All Rhat < 1.05 .
5 core parameters with effect sample size n.eff < 2000 :
alph[d], alph[D], bet[d], bet[D], mean[d]
0 auxiliary parameters with effect sample size n.eff < 2000 :
## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // betacpp:
All Rhat < 1.05 .
12 core parameters with effect sample size n.eff < 2000 :
sd[d], sd[D], alph[d], alph[D], bet[d], bet[D], mean[d], alph[d], alph[D], bet[d], bet[D], d[21]
0 auxiliary parameters with effect sample size n.eff < 2000 :
>
> ## returns tibble with single row
> check_set(results)
Error in vectbl_assign(x[[j]], i, recycled_value[[j]]) :
DLL requires the use of native symbols
Calls: check_set ... tbl_subassign_row -> withCallingHandlers -> vectbl_assign
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4-2
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MPTmultiverse)
>
> test_check("MPTmultiverse")
Setting options for a quick test run.
Do not interpret results![ FAIL 2 | WARN 9 | SKIP 4 | PASS 6 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (4)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-mptinr.R:25:3'): No-pooling approaches work ────────────────────
Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
Backtrace:
▆
1. └─MPTmultiverse::fit_mpt(...) at test-mptinr.R:25:2
2. └─MPTmultiverse:::mpt_mptinr(...)
3. └─MPTmultiverse:::mpt_mptinr_no(...)
4. ├─base::`[<-`(...)
5. └─tibble:::`[<-.tbl_df`(...)
6. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
7. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
8. ├─base::withCallingHandlers(...)
9. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
── Error ('test-mptinr.R:272:3'): Complete-pooling approaches work ─────────────
Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
Backtrace:
▆
1. └─MPTmultiverse::fit_mpt(...) at test-mptinr.R:272:2
2. └─MPTmultiverse:::mpt_mptinr(...)
3. └─MPTmultiverse:::mpt_mptinr_complete(...)
4. ├─base::`[<-`(`*tmp*`, 1, "type", value = `<chr>`)
5. └─tibble:::`[<-.tbl_df`(`*tmp*`, 1, "type", value = `<chr>`)
6. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
7. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
8. ├─base::withCallingHandlers(...)
9. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
[ FAIL 2 | WARN 9 | SKIP 4 | PASS 6 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc