CRAN Package Check Results for Package MPTmultiverse

Last updated on 2023-03-20 12:51:16 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-2 NOTE
r-devel-linux-x86_64-debian-gcc 0.4-2 5.06 63.23 68.29 ERROR
r-devel-linux-x86_64-fedora-clang 0.4-2 130.24 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4-2 142.17 NOTE
r-devel-windows-x86_64 0.4-2 38.00 161.00 199.00 NOTE
r-patched-linux-x86_64 0.4-2 5.70 93.53 99.23 NOTE
r-release-linux-x86_64 0.4-2 7.10 94.07 101.17 NOTE
r-release-macos-arm64 0.4-2 55.00 NOTE
r-release-macos-x86_64 0.4-2 63.00 NOTE
r-release-windows-x86_64 0.4-2 12.00 162.00 174.00 NOTE
r-oldrel-macos-arm64 0.4-2 41.00 NOTE
r-oldrel-macos-x86_64 0.4-2 70.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4-2 17.00 164.00 181.00 NOTE

Check Details

Version: 0.4-2
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-2
Check: examples
Result: ERROR
    Running examples in ‘MPTmultiverse-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: check_results
    > ### Title: Check results from MPTmultiverse
    > ### Aliases: check_results write_check_results check_set
    >
    > ### ** Examples
    >
    > load(file = system.file("extdata", "results_bayen_kuhlmann.RData",
    + package = "MPTmultiverse"))
    > ## prints checks to console
    > check_results(results)
    ## MPTinR: no pooling
    Based on asymptotic method, proportion of participants with non-identified parameters:
     condition core proportion
    1 load FALSE 0
    2 load TRUE 0.0417
    3 no_load FALSE 0.0208
    4 no_load TRUE 0.0208
    
    Based on asymptotic CIs, table of non-identified parameters:
     condition core parameter n
    1 load TRUE d 2
    2 no_load FALSE g 1
    3 no_load TRUE d 1
    
    Based on PB/MLE method, proportion of participants with non-identified parameters:
     condition core proportion
    1 load FALSE 0
    2 load TRUE 0.354
    3 no_load FALSE 0.0625
    4 no_load TRUE 0
    
    Based on PB/MLE CIs, table of non-identified parameters:
     condition core parameter n
    1 load TRUE d 17
    2 no_load FALSE g 3
    
    Based on NPB/MLE method, proportion of participants with non-identified parameters:
     condition core proportion
    1 load FALSE 0
    2 load TRUE 0.354
    3 no_load FALSE 0.0625
    4 no_load TRUE 0
    
    Based on NPB/MLE CIs, table of non-identified parameters:
     condition core parameter n
    1 load TRUE d 17
    2 no_load FALSE g 3
    
    
    ## MPTinR: complete pooling
    No convergence problems.
    
    
    ## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // no // TreeBUGS // simple:
     All Rhat < 1.05 .
     All effect sample sizes > 2000 .
    
    
    ## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // complete // TreeBUGS // simple:
     All Rhat < 1.05 .
     All effect sample sizes > 2000 .
    
    
    ## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // trait:
     All Rhat < 1.05 .
     All effect sample sizes > 2000 .
    
    
    ## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // trait_uncorrelated:
     All Rhat < 1.05 .
     All effect sample sizes > 2000 .
    
    
    ## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // beta:
     All Rhat < 1.05 .
     5 core parameters with effect sample size n.eff < 2000 :
    alph[d], alph[D], bet[d], bet[D], mean[d]
     0 auxiliary parameters with effect sample size n.eff < 2000 :
    
    
    
    ## /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/2HTSM_Submodel4.eqn // /home/mariusbarth/R/x86_64-pc-linux-gnu-library/3.6/MPTmultiverse/extdata/Kuhlmann_dl7.csv // partial // TreeBUGS // betacpp:
     All Rhat < 1.05 .
     12 core parameters with effect sample size n.eff < 2000 :
    sd[d], sd[D], alph[d], alph[D], bet[d], bet[D], mean[d], alph[d], alph[D], bet[d], bet[D], d[21]
     0 auxiliary parameters with effect sample size n.eff < 2000 :
    
    
    
    >
    > ## returns tibble with single row
    > check_set(results)
    Error in vectbl_assign(x[[j]], i, recycled_value[[j]]) :
     DLL requires the use of native symbols
    Calls: check_set ... tbl_subassign_row -> withCallingHandlers -> vectbl_assign
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4-2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(MPTmultiverse)
     >
     > test_check("MPTmultiverse")
     Setting options for a quick test run.
     Do not interpret results![ FAIL 2 | WARN 9 | SKIP 4 | PASS 6 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (4)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-mptinr.R:25:3'): No-pooling approaches work ────────────────────
     Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
     Backtrace:
     ▆
     1. └─MPTmultiverse::fit_mpt(...) at test-mptinr.R:25:2
     2. └─MPTmultiverse:::mpt_mptinr(...)
     3. └─MPTmultiverse:::mpt_mptinr_no(...)
     4. ├─base::`[<-`(...)
     5. └─tibble:::`[<-.tbl_df`(...)
     6. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
     7. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
     8. ├─base::withCallingHandlers(...)
     9. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
     ── Error ('test-mptinr.R:272:3'): Complete-pooling approaches work ─────────────
     Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
     Backtrace:
     ▆
     1. └─MPTmultiverse::fit_mpt(...) at test-mptinr.R:272:2
     2. └─MPTmultiverse:::mpt_mptinr(...)
     3. └─MPTmultiverse:::mpt_mptinr_complete(...)
     4. ├─base::`[<-`(`*tmp*`, 1, "type", value = `<chr>`)
     5. └─tibble:::`[<-.tbl_df`(`*tmp*`, 1, "type", value = `<chr>`)
     6. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
     7. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
     8. ├─base::withCallingHandlers(...)
     9. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
    
     [ FAIL 2 | WARN 9 | SKIP 4 | PASS 6 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc