CRAN Package Check Results for Package PIGE

Last updated on 2017-07-21 08:48:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9 2.66 49.23 51.89 NOTE
r-devel-linux-x86_64-debian-gcc 0.9 2.69 48.83 51.52 NOTE
r-devel-linux-x86_64-fedora-clang 0.9 74.65 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9 73.49 NOTE
r-devel-windows-ix86+x86_64 0.9 11.00 99.00 110.00 NOTE
r-patched-linux-x86_64 0.9 2.57 49.12 51.69 NOTE
r-patched-solaris-x86 0.9 165.80 NOTE
r-release-linux-x86_64 0.9 2.69 48.45 51.14 NOTE
r-release-windows-ix86+x86_64 0.9 7.00 103.00 110.00 NOTE
r-release-osx-x86_64 0.9 NOTE
r-oldrel-windows-ix86+x86_64 0.9 9.00 106.00 115.00 NOTE
r-oldrel-osx-x86_64 0.9 NOTE

Check Details

Version: 0.9
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.9
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘ARTP’ ‘snowfall’ ‘survival’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.9
Check: R code for possible problems
Result: NOTE
    ARTP.GE: no visible global function definition for ‘read.table’
    ARTP.GE: no visible global function definition for ‘write.table’
    ARTP.GE: no visible global function definition for ‘ARTP_pathway’
    LR.cont: no visible global function definition for ‘glm’
    LR.cont: no visible global function definition for ‘update’
    LR.cont: no visible global function definition for ‘binomial’
    LR.cont.surv: no visible global function definition for ‘coxph’
    LR.cont.surv: no visible global function definition for ‘update’
    LR.inter.cat: no visible global function definition for ‘glm’
    LR.inter.cat: no visible global function definition for ‘update’
    LR.inter.cat: no visible global function definition for ‘binomial’
    LR.inter.cat: no visible global function definition for ‘pchisq’
    LR.inter.cat: no visible global function definition for ‘anova’
    LR.inter.cat.surv: no visible global function definition for ‘coxph’
    LR.inter.cat.surv: no visible global function definition for ‘update’
    LR.inter.cat.surv: no visible global function definition for ‘anova’
    LR.inter.cont: no visible global function definition for ‘glm’
    LR.inter.cont: no visible global function definition for ‘update’
    LR.inter.cont: no visible global function definition for ‘binomial’
    LR.inter.cont.surv: no visible global function definition for ‘coxph’
    LR.inter.cont.surv: no visible global function definition for ‘update’
    compute.p.snp.obs: no visible global function definition for
     ‘write.table’
    data.to.list.gene.snp: no visible global function definition for
     ‘read.table’
    permutation.snp: no visible global function definition for ‘sfInit’
    permutation.snp: no visible global function definition for ‘sfLibrary’
    permutation.snp: no visible global function definition for
     ‘sfExportAll’
    permutation.snp: no visible global function definition for ‘sfLapply’
    permutation.snp: no visible global function definition for ‘sfStop’
    permutation.snp: no visible global function definition for
     ‘write.table’
    permutation.wrapper.cat.inter: no visible global function definition
     for ‘update’
    permutation.wrapper.cont: no visible global function definition for
     ‘update’
    permutation.wrapper.cont.inter: no visible global function definition
     for ‘update’
    Undefined global functions or variables:
     ARTP_pathway anova binomial coxph glm pchisq read.table sfExportAll
     sfInit sfLapply sfLibrary sfStop update write.table
    Consider adding
     importFrom("stats", "anova", "binomial", "glm", "pchisq", "update")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64