CRAN Package Check Results for Package PLSbiplot1

Last updated on 2020-04-09 00:50:37 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1 8.79 72.16 80.95 NOTE
r-devel-linux-x86_64-debian-gcc 0.1 6.44 56.28 62.72 NOTE
r-devel-linux-x86_64-fedora-clang 0.1 96.98 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1 101.01 NOTE
r-devel-windows-ix86+x86_64 0.1 11.00 118.00 129.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 0.1 12.00 83.00 95.00 NOTE
r-patched-linux-x86_64 0.1 7.27 71.34 78.61 NOTE
r-patched-solaris-x86 0.1 135.40 NOTE
r-release-linux-x86_64 0.1 6.96 66.07 73.03 NOTE
r-release-windows-ix86+x86_64 0.1 11.00 107.00 118.00 NOTE
r-release-osx-x86_64 0.1 ERROR
r-oldrel-windows-ix86+x86_64 0.1 12.00 100.00 112.00 NOTE
r-oldrel-osx-x86_64 0.1 NOTE

Check Details

Version: 0.1
Check: R code for possible problems
Result: NOTE
    Mag.Bmat.plot: no visible global function definition for 'lines'
    Mag.Bmat.plot: no visible global function definition for 'text'
    Mag.Bmat.plot: no visible global function definition for 'legend'
    PCA.biplot: no visible binding for global variable 'sd'
    PCA.biplot_no.SN: no visible binding for global variable 'sd'
    PLS.GLM.biplot: no visible binding for global variable 'sd'
    PLS.GLM.biplot: no visible global function definition for 'sd'
    PLS.GLM.biplot_SIMPLS: no visible binding for global variable 'sd'
    PLS.GLM.biplot_SIMPLS: no visible global function definition for 'sd'
    PLS.GLM.biplot_SIMPLS_no.SN: no visible binding for global variable
     'sd'
    PLS.GLM.biplot_SIMPLS_no.SN: no visible global function definition for
     'sd'
    PLS.GLM.biplot_no.SN: no visible binding for global variable 'sd'
    PLS.GLM.biplot_no.SN: no visible global function definition for 'sd'
    PLS.GLM.biplot_no_labels: no visible binding for global variable 'sd'
    PLS.GLM.biplot_no_labels: no visible global function definition for
     'sd'
    PLS.biplot: no visible binding for global variable 'sd'
    PLS.biplot.area: no visible binding for global variable 'sd'
    PLS.biplot_no.SN: no visible binding for global variable 'sd'
    PLS.biplot_no_labels: no visible binding for global variable 'sd'
    SPLS.GLM.biplot: no visible binding for global variable 'sd'
    SPLS.GLM.biplot: no visible global function definition for 'sd'
    SPLS.GLM.biplot_no.SN: no visible binding for global variable 'sd'
    SPLS.GLM.biplot_no.SN: no visible global function definition for 'sd'
    SPLS.biplot: no visible binding for global variable 'sd'
    SPLS.biplot_no_ax.labels: no visible binding for global variable 'sd'
    SPLS.biplot_no_labels: no visible binding for global variable 'sd'
    cov.biplot: no visible global function definition for 'cov'
    cov.biplot: no visible global function definition for 'arrows'
    cov.biplot: no visible global function definition for 'text'
    cov.monoplot: no visible global function definition for 'cov'
    cov.monoplot: no visible global function definition for 'arrows'
    cov.monoplot: no visible global function definition for 'text'
    draw.biplot : .samples.plot: no visible global function definition for
     'text'
    draw.biplot : .samples.plot: no visible global function definition for
     'points'
    draw.biplot : .predict.func: no visible global function definition for
     'lines'
    draw.biplot : .marker.label.cm: no visible global function definition
     for 'par'
    draw.biplot : .marker.label.cm: no visible global function definition
     for 'lines'
    draw.biplot : .marker.label.cm: no visible global function definition
     for 'text'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'coefficients'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'lm'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'abline'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'par'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'mtext'
    draw.biplot : .bags.plot: no visible global function definition for
     'lines'
    draw.biplot : .bags.plot: no visible global function definition for
     'points'
    draw.biplot : .ellipse.plot: no visible global function definition for
     'lines'
    draw.biplot : .new.samples.plot: no visible global function definition
     for 'points'
    draw.biplot : .new.samples.plot: no visible global function definition
     for 'text'
    draw.biplot : .class.means.plot: no visible global function definition
     for 'points'
    draw.biplot : .class.means.plot: no visible global function definition
     for 'text'
    draw.biplot : .density.plot: no visible global function definition for
     'colorRampPalette'
    draw.biplot : .density.plot: no visible global function definition for
     'image'
    draw.biplot : .density.plot: no visible global function definition for
     'contour'
    draw.biplot : .density.legend: no visible global function definition
     for 'par'
    draw.biplot : .density.legend: no visible global function definition
     for 'rect'
    draw.biplot : .density.legend: no visible global function definition
     for 'axis'
    draw.biplot: no visible global function definition for 'par'
    draw.biplot: no visible global function definition for 'layout'
    draw.biplot: no visible global function definition for 'arrows'
    draw.biplot.with.triangles : .samples.plot: no visible global function
     definition for 'text'
    draw.biplot.with.triangles : .samples.plot: no visible global function
     definition for 'points'
    draw.biplot.with.triangles : .predict.func: no visible global function
     definition for 'lines'
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for 'par'
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for 'lines'
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for 'text'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'coefficients'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'lm'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'abline'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'par'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'mtext'
    draw.biplot.with.triangles : .bags.plot: no visible global function
     definition for 'lines'
    draw.biplot.with.triangles : .bags.plot: no visible global function
     definition for 'points'
    draw.biplot.with.triangles : .ellipse.plot: no visible global function
     definition for 'lines'
    draw.biplot.with.triangles : .new.samples.plot: no visible global
     function definition for 'points'
    draw.biplot.with.triangles : .new.samples.plot: no visible global
     function definition for 'text'
    draw.biplot.with.triangles : .class.means.plot: no visible global
     function definition for 'points'
    draw.biplot.with.triangles : .class.means.plot: no visible global
     function definition for 'text'
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for 'colorRampPalette'
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for 'image'
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for 'contour'
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for 'par'
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for 'rect'
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for 'axis'
    draw.biplot.with.triangles: no visible global function definition for
     'par'
    draw.biplot.with.triangles: no visible global function definition for
     'layout'
    draw.biplot.with.triangles: no visible global function definition for
     'polygon'
    draw.biplot.with.triangles: no visible global function definition for
     'rainbow'
    draw.biplot.with.triangles: no visible global function definition for
     'arrows'
    opt.penalty.values: no visible global function definition for
     'flush.console'
    Undefined global functions or variables:
     abline arrows axis coefficients colorRampPalette contour cov
     flush.console image layout legend lines lm mtext par points polygon
     rainbow rect sd text
    Consider adding
     importFrom("grDevices", "colorRampPalette", "rainbow")
     importFrom("graphics", "abline", "arrows", "axis", "contour", "image",
     "layout", "legend", "lines", "mtext", "par", "points",
     "polygon", "rect", "text")
     importFrom("stats", "coefficients", "cov", "lm", "sd")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 0.1
Check: R code for possible problems
Result: NOTE
    Mag.Bmat.plot: no visible global function definition for ‘plot’
    Mag.Bmat.plot: no visible global function definition for ‘lines’
    Mag.Bmat.plot: no visible global function definition for ‘text’
    Mag.Bmat.plot: no visible global function definition for ‘legend’
    PCA.biplot: no visible binding for global variable ‘sd’
    PCA.biplot_no.SN: no visible binding for global variable ‘sd’
    PLS.GLM.biplot: no visible binding for global variable ‘sd’
    PLS.GLM.biplot: no visible global function definition for ‘sd’
    PLS.GLM.biplot_SIMPLS: no visible binding for global variable ‘sd’
    PLS.GLM.biplot_SIMPLS: no visible global function definition for ‘sd’
    PLS.GLM.biplot_SIMPLS_no.SN: no visible binding for global variable
     ‘sd’
    PLS.GLM.biplot_SIMPLS_no.SN: no visible global function definition for
     ‘sd’
    PLS.GLM.biplot_no.SN: no visible binding for global variable ‘sd’
    PLS.GLM.biplot_no.SN: no visible global function definition for ‘sd’
    PLS.GLM.biplot_no_labels: no visible binding for global variable ‘sd’
    PLS.GLM.biplot_no_labels: no visible global function definition for
     ‘sd’
    PLS.biplot: no visible binding for global variable ‘sd’
    PLS.biplot.area: no visible binding for global variable ‘sd’
    PLS.biplot_no.SN: no visible binding for global variable ‘sd’
    PLS.biplot_no_labels: no visible binding for global variable ‘sd’
    SPLS.GLM.biplot: no visible binding for global variable ‘sd’
    SPLS.GLM.biplot: no visible global function definition for ‘sd’
    SPLS.GLM.biplot_no.SN: no visible binding for global variable ‘sd’
    SPLS.GLM.biplot_no.SN: no visible global function definition for ‘sd’
    SPLS.biplot: no visible binding for global variable ‘sd’
    SPLS.biplot_no_ax.labels: no visible binding for global variable ‘sd’
    SPLS.biplot_no_labels: no visible binding for global variable ‘sd’
    cov.biplot: no visible global function definition for ‘cov’
    cov.biplot: no visible global function definition for ‘plot’
    cov.biplot: no visible global function definition for ‘arrows’
    cov.biplot: no visible global function definition for ‘text’
    cov.monoplot: no visible global function definition for ‘cov’
    cov.monoplot: no visible global function definition for ‘plot’
    cov.monoplot: no visible global function definition for ‘arrows’
    cov.monoplot: no visible global function definition for ‘text’
    draw.biplot : .samples.plot: no visible global function definition for
     ‘text’
    draw.biplot : .samples.plot: no visible global function definition for
     ‘points’
    draw.biplot : .predict.func: no visible global function definition for
     ‘lines’
    draw.biplot : .marker.label.cm: no visible global function definition
     for ‘par’
    draw.biplot : .marker.label.cm: no visible global function definition
     for ‘lines’
    draw.biplot : .marker.label.cm: no visible global function definition
     for ‘text’
    draw.biplot : .lin.axes.plot: no visible global function definition for
     ‘coefficients’
    draw.biplot : .lin.axes.plot: no visible global function definition for
     ‘lm’
    draw.biplot : .lin.axes.plot: no visible global function definition for
     ‘abline’
    draw.biplot : .lin.axes.plot: no visible global function definition for
     ‘par’
    draw.biplot : .lin.axes.plot: no visible global function definition for
     ‘mtext’
    draw.biplot : .bags.plot: no visible global function definition for
     ‘lines’
    draw.biplot : .bags.plot: no visible global function definition for
     ‘points’
    draw.biplot : .ellipse.plot: no visible global function definition for
     ‘lines’
    draw.biplot : .new.samples.plot: no visible global function definition
     for ‘points’
    draw.biplot : .new.samples.plot: no visible global function definition
     for ‘text’
    draw.biplot : .class.means.plot: no visible global function definition
     for ‘points’
    draw.biplot : .class.means.plot: no visible global function definition
     for ‘text’
    draw.biplot : .density.plot: no visible global function definition for
     ‘colorRampPalette’
    draw.biplot : .density.plot: no visible global function definition for
     ‘image’
    draw.biplot : .density.plot: no visible global function definition for
     ‘contour’
    draw.biplot : .density.legend: no visible global function definition
     for ‘par’
    draw.biplot : .density.legend: no visible global function definition
     for ‘plot’
    draw.biplot : .density.legend: no visible global function definition
     for ‘rect’
    draw.biplot : .density.legend: no visible global function definition
     for ‘axis’
    draw.biplot: no visible global function definition for ‘par’
    draw.biplot: no visible global function definition for ‘layout’
    draw.biplot: no visible global function definition for ‘plot’
    draw.biplot: no visible global function definition for ‘arrows’
    draw.biplot.with.triangles : .samples.plot: no visible global function
     definition for ‘text’
    draw.biplot.with.triangles : .samples.plot: no visible global function
     definition for ‘points’
    draw.biplot.with.triangles : .predict.func: no visible global function
     definition for ‘lines’
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for ‘par’
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for ‘lines’
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for ‘text’
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for ‘coefficients’
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for ‘lm’
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for ‘abline’
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for ‘par’
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for ‘mtext’
    draw.biplot.with.triangles : .bags.plot: no visible global function
     definition for ‘lines’
    draw.biplot.with.triangles : .bags.plot: no visible global function
     definition for ‘points’
    draw.biplot.with.triangles : .ellipse.plot: no visible global function
     definition for ‘lines’
    draw.biplot.with.triangles : .new.samples.plot: no visible global
     function definition for ‘points’
    draw.biplot.with.triangles : .new.samples.plot: no visible global
     function definition for ‘text’
    draw.biplot.with.triangles : .class.means.plot: no visible global
     function definition for ‘points’
    draw.biplot.with.triangles : .class.means.plot: no visible global
     function definition for ‘text’
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for ‘colorRampPalette’
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for ‘image’
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for ‘contour’
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for ‘par’
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for ‘plot’
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for ‘rect’
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for ‘axis’
    draw.biplot.with.triangles: no visible global function definition for
     ‘par’
    draw.biplot.with.triangles: no visible global function definition for
     ‘layout’
    draw.biplot.with.triangles: no visible global function definition for
     ‘plot’
    draw.biplot.with.triangles: no visible global function definition for
     ‘polygon’
    draw.biplot.with.triangles: no visible global function definition for
     ‘rainbow’
    draw.biplot.with.triangles: no visible global function definition for
     ‘arrows’
    opt.penalty.values: no visible global function definition for
     ‘flush.console’
    Undefined global functions or variables:
     abline arrows axis coefficients colorRampPalette contour cov
     flush.console image layout legend lines lm mtext par plot points
     polygon rainbow rect sd text
    Consider adding
     importFrom("grDevices", "colorRampPalette", "rainbow")
     importFrom("graphics", "abline", "arrows", "axis", "contour", "image",
     "layout", "legend", "lines", "mtext", "par", "plot",
     "points", "polygon", "rect", "text")
     importFrom("stats", "coefficients", "cov", "lm", "sd")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘mixOmics’
Flavor: r-release-osx-x86_64

Version: 0.1
Check: examples
Result: ERROR
    Running examples in ‘PLSbiplot1-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Mag.Bmat.plot
    > ### Title: Magnitude of the Partial Least Squares Regression (PLSR)
    > ### coefficients matrix
    > ### Aliases: Mag.Bmat.plot
    >
    > ### ** Examples
    >
    > if(require(pls))
    + data(oliveoil, package="pls")
    Loading required package: pls
    
    Attaching package: ‘pls’
    
    The following object is masked from ‘package:stats’:
    
     loadings
    
    > X = as.matrix(oliveoil$chemical, ncol=5)
    > dimnames(X) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
    + "S1","S2","S3","S4","S5","S6")),
    + paste(c("Acidity","Peroxide","K232","K270","DK")))
    > Y = as.matrix(oliveoil$sensory, ncol=6)
    > dimnames(Y) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
    + "S1","S2","S3","S4","S5","S6")),
    + paste(c("Yellow","Green","Brown","Glossy","Transp","Syrup")))
    > Mag.Bmat.plot(X, Y, algorithm=mod.SIMPLS, A=2)
    >
    > #nutrimouse data
    > if(require(mixOmics))
    + data(nutrimouse, package="mixOmics")
    Loading required package: mixOmics
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘mixOmics’
    > X1 = as.matrix(nutrimouse$lipid, ncol=21)
    Error in as.matrix(nutrimouse$lipid, ncol = 21) :
     object 'nutrimouse' not found
    Execution halted
Flavor: r-release-osx-x86_64