Last updated on 2023-03-31 10:51:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2022.4.6 | 9.18 | 130.47 | 139.65 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 2022.4.6 | 7.49 | 98.03 | 105.52 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 2022.4.6 | 172.22 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2022.4.6 | 174.57 | WARN | |||
| r-devel-windows-x86_64 | 2022.4.6 | 33.00 | 0.00 | 33.00 | OK | |
| r-patched-linux-x86_64 | 2022.4.6 | 9.64 | 122.99 | 132.63 | WARN | |
| r-release-linux-x86_64 | 2022.4.6 | 9.74 | 124.81 | 134.55 | OK | |
| r-release-macos-arm64 | 2022.4.6 | 49.00 | OK | |||
| r-release-macos-x86_64 | 2022.4.6 | 86.00 | OK | |||
| r-release-windows-x86_64 | 2022.4.6 | 32.00 | 183.00 | 215.00 | OK | |
| r-oldrel-macos-arm64 | 2022.4.6 | 48.00 | OK | |||
| r-oldrel-macos-x86_64 | 2022.4.6 | 73.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2022.4.6 | 30.00 | 181.00 | 211.00 | ERROR |
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 15.0.6’
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-12 (Debian 12.2.0-14) 12.2.0’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-clang/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘clang version 16.0.0’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Flavor: r-patched-linux-x86_64
Version: 2022.4.6
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'PeakSegJoint-Ex.R' failed
The error most likely occurred in:
> ### Name: PeakSegJointError
> ### Title: PeakSegJointError
> ### Aliases: PeakSegJointError
>
> ### ** Examples
>
>
> library(PeakSegJoint)
> data(H3K36me3.TDH.other.chunk1, envir=environment())
> lims <- c(43000000, 43200000) # left
> some.counts <-
+ subset(H3K36me3.TDH.other.chunk1$counts,
+ lims[1] < chromEnd & chromStart < lims[2])
> some.regions <-
+ subset(H3K36me3.TDH.other.chunk1$regions,
+ lims[1] < chromEnd & chromStart < lims[2])
> fit <- PeakSegJointSeveral(some.counts)
Flavor: r-oldrel-windows-ix86+x86_64
Version: 2022.4.6
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> suite <- Sys.getenv("TEST_SUITE")
> if(suite=="")suite <- NULL
> test_check("PeakSegJoint", filter=suite)
Loading required package: PeakSegJoint
Flavor: r-oldrel-windows-ix86+x86_64