CRAN Package Check Results for Package PhenotypeSimulator

Last updated on 2021-06-24 17:51:08 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.3 32.78 256.44 289.22 NOTE
r-devel-linux-x86_64-debian-gcc 0.3.3 19.78 190.82 210.60 NOTE
r-devel-linux-x86_64-fedora-clang 0.3.3 348.40 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3.3 337.14 NOTE
r-devel-windows-x86_64 0.3.3 43.00 322.00 365.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 0.3.3 NOTE
r-patched-linux-x86_64 0.3.3 26.31 246.25 272.56 NOTE
r-patched-solaris-x86 0.3.3 398.10 NOTE
r-release-linux-x86_64 0.3.3 25.92 242.96 268.88 NOTE
r-release-macos-arm64 0.3.3 ERROR
r-release-macos-x86_64 0.3.3 WARN
r-release-windows-ix86+x86_64 0.3.3 51.00 304.00 355.00 NOTE
r-oldrel-macos-x86_64 0.3.3 WARN

Check Details

Version: 0.3.3
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 0.3.3
Check: installed package size
Result: NOTE
     installed size is 5.6Mb
     sub-directories of 1Mb or more:
     doc 1.5Mb
     extdata 3.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64

Version: 0.3.3
Check: package dependencies
Result: ERROR
    Package required but not available: ‘snpStats’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64

Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘PhenotypeSimulator.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘PhenotypeSimulator.Rmd’
    
    --- re-building ‘Sample-scripts-external-genotype-simulation.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Error: processing vignette 'Sample-scripts-external-genotype-simulation.Rmd' failed with diagnostics:
    Failed to locate ‘weave’ output file ‘Sample-scripts-external-genotype-simulation.pdf’ or ‘Sample-scripts-external-genotype-simulation.html’ for vignette with name ‘Sample-scripts-external-genotype-simulation’ and engine ‘knitr::rmarkdown’. The following files exist in working directory ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.1/PhenotypeSimulator.Rcheck/vign_test/PhenotypeSimulator/vignettes’: ‘PhenotypeSimulator.R’ (18561 bytes), ‘PhenotypeSimulator.Rmd’ (30753 bytes), ‘PhenotypeSimulator.html’ (266388 bytes), ‘PhenotypeSimulator.md’ (31817 bytes), ‘Sample-scripts-external-genotype-simulation.R’ (152 bytes), ‘Sample-scripts-external-genotype-simulation.Rmd’ (5727 bytes), ‘Sample-scripts-external-genotype-simulation.md’ (5574 bytes), ‘Simulation-and-LinearModel.Rmd’ (31116 bytes), ‘SimulationAndLinearModel.bib’ (5567 bytes), ‘SimulationBasedOnExampleData.Rmd’ (11673 bytes), ‘Vignette-example-data.bib’ (3946 bytes), ‘genotype-simulation.bib’ (41426 bytes), ‘plos-genetics.csl’ (956 bytes), ‘sample-scripts-external-genotype-simulation.html’ (7839 bytes)
    --- failed re-building ‘Sample-scripts-external-genotype-simulation.Rmd’
    
    --- re-building ‘Simulation-and-LinearModel.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘Simulation-and-LinearModel.Rmd’
    
    --- re-building ‘SimulationBasedOnExampleData.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘SimulationBasedOnExampleData.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Sample-scripts-external-genotype-simulation.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘PhenotypeSimulator.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘PhenotypeSimulator.Rmd’
    
    --- re-building ‘Sample-scripts-external-genotype-simulation.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Error: processing vignette 'Sample-scripts-external-genotype-simulation.Rmd' failed with diagnostics:
    Failed to locate ‘weave’ output file ‘Sample-scripts-external-genotype-simulation.pdf’ or ‘Sample-scripts-external-genotype-simulation.html’ for vignette with name ‘Sample-scripts-external-genotype-simulation’ and engine ‘knitr::rmarkdown’. The following files exist in working directory ‘/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/PhenotypeSimulator.Rcheck/vign_test/PhenotypeSimulator/vignettes’: ‘PhenotypeSimulator.R’ (18561 bytes), ‘PhenotypeSimulator.Rmd’ (30753 bytes), ‘PhenotypeSimulator.html’ (266386 bytes), ‘PhenotypeSimulator.md’ (31815 bytes), ‘Sample-scripts-external-genotype-simulation.R’ (152 bytes), ‘Sample-scripts-external-genotype-simulation.Rmd’ (5727 bytes), ‘Sample-scripts-external-genotype-simulation.md’ (5574 bytes), ‘Simulation-and-LinearModel.Rmd’ (31116 bytes), ‘SimulationAndLinearModel.bib’ (5567 bytes), ‘SimulationBasedOnExampleData.Rmd’ (11673 bytes), ‘Vignette-example-data.bib’ (3946 bytes), ‘genotype-simulation.bib’ (41426 bytes), ‘plos-genetics.csl’ (956 bytes), ‘sample-scripts-external-genotype-simulation.html’ (7839 bytes)
    --- failed re-building ‘Sample-scripts-external-genotype-simulation.Rmd’
    
    --- re-building ‘Simulation-and-LinearModel.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Simulation-and-LinearModel.Rmd’
    
    --- re-building ‘SimulationBasedOnExampleData.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘SimulationBasedOnExampleData.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Sample-scripts-external-genotype-simulation.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64