CRAN Package Check Results for Package PwrGSD

Last updated on 2017-07-21 08:48:22.

Check Details

Version: 2.000
Check: R code for possible problems
Result: NOTE
    AsyPwrGSD: no visible global function definition for ‘approx’
    CY2TOShaz: no visible global function definition for ‘optim’
    CondPower: no visible global function definition for ‘qnorm’
    CondPower: no visible global function definition for ‘pnorm’
    EX1gXK: no visible global function definition for ‘approx’
    Elements: no visible binding for global variable ‘na.pass’
    IntSurvDiff: no visible global function definition for ‘is.empty.model’
    IntSurvDiff: no visible global function definition for ‘model.matrix’
    IntSurvDiff: no visible global function definition for ‘model.extract’
    RCM2RR: no visible global function definition for ‘optimize’
    SimGSB.boundaries: no visible global function definition for ‘rnorm’
    SimPwrGSD: no visible binding for global variable ‘var’
    as.boundaries.PwrGSD: no visible global function definition for
     ‘update’
    costopplot: no visible global function definition for ‘par’
    costopplot: no visible global function definition for ‘gray’
    costopplot: no visible global function definition for ‘model.frame’
    costopplot: no visible global function definition for ‘model.extract’
    costopplot: no visible global function definition for ‘co.intervals’
    costopplot: no visible global function definition for ‘plot.new’
    costopplot : do.panel : Paxis: no visible global function definition
     for ‘axis’
    costopplot : do.panel: no visible global function definition for ‘par’
    costopplot : do.panel: no visible global function definition for
     ‘plot.new’
    costopplot : do.panel: no visible global function definition for
     ‘plot.window’
    costopplot : do.panel: no visible global function definition for ‘grid’
    costopplot : do.panel: no visible global function definition for ‘box’
    costopplot: no visible global function definition for ‘mtext’
    costopplot: no visible global function definition for ‘plot.window’
    costopplot: no visible global function definition for ‘rect’
    costopplot: no visible global function definition for ‘text’
    costopplot: no visible global function definition for ‘axis’
    costopplot: no visible global function definition for ‘box’
    mysurvfit: no visible binding for global variable ‘na.fail’
    mysurvfit: no visible global function definition for ‘model.extract’
    plot.blkdcp: no visible global function definition for ‘quantile’
    plot.blkdcp: no visible global function definition for ‘plot’
    plot.blkdcp: no visible global function definition for ‘lines’
    plot.boundaries: no visible global function definition for ‘col2rgb’
    plot.boundaries: no visible global function definition for ‘points’
    print.survtest: no visible global function definition for ‘pnorm’
    stpplt: no visible global function definition for ‘polygon’
    summary.survtest: no visible global function definition for ‘pnorm’
    wtdlogrank: no visible global function definition for ‘is.empty.model’
    wtdlogrank: no visible global function definition for ‘model.matrix’
    wtdlogrank: no visible global function definition for ‘model.extract’
    Undefined global functions or variables:
     approx axis box co.intervals col2rgb gray grid is.empty.model lines
     model.extract model.frame model.matrix mtext na.fail na.pass optim
     optimize par plot plot.new plot.window pnorm points polygon qnorm
     quantile rect rnorm text update var
    Consider adding
     importFrom("grDevices", "col2rgb", "gray")
     importFrom("graphics", "axis", "box", "co.intervals", "grid", "lines",
     "mtext", "par", "plot", "plot.new", "plot.window", "points",
     "polygon", "rect", "text")
     importFrom("stats", "approx", "is.empty.model", "model.extract",
     "model.frame", "model.matrix", "na.fail", "na.pass",
     "optim", "optimize", "pnorm", "qnorm", "quantile", "rnorm",
     "update", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.000
Check: compiled code
Result: NOTE
    File ‘PwrGSD/libs/PwrGSD.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.000
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    PwrGSD 2.000
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'GrpSeqBnds-vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `harvard.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.3 \usepackage
     {hyperref}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64