CRAN Package Check Results for Package Rphylip

Last updated on 2019-12-15 19:48:52 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-23 8.62 48.25 56.87 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-23 7.21 37.80 45.01 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-23 68.47 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-23 66.76 NOTE
r-devel-windows-ix86+x86_64 0.1-23 12.00 69.00 81.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 0.1-23 12.00 88.00 100.00 NOTE
r-patched-linux-x86_64 0.1-23 6.13 43.98 50.11 NOTE
r-patched-solaris-x86 0.1-23 89.40 NOTE
r-release-linux-x86_64 0.1-23 7.23 44.20 51.43 NOTE
r-release-windows-ix86+x86_64 0.1-23 12.00 59.00 71.00 NOTE
r-release-osx-x86_64 0.1-23 NOTE
r-oldrel-windows-ix86+x86_64 0.1-23 9.00 57.00 66.00 NOTE
r-oldrel-osx-x86_64 0.1-23 NOTE

Check Details

Version: 0.1-23
Check: R code for possible problems
Result: NOTE
    Rclique: no visible global function definition for 'hasArg'
    Rconsense: no visible global function definition for 'hasArg'
    Rcontml: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'pchisq'
    Rdnacomp: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'as.dist'
    Rdnainvar: no visible global function definition for 'hasArg'
    Rdnaml: no visible global function definition for 'hasArg'
    Rdnapars: no visible global function definition for 'hasArg'
    Rdnapenny: no visible global function definition for 'hasArg'
    Rdollop: no visible global function definition for 'hasArg'
    Rdolpenny: no visible global function definition for 'hasArg'
    Rfitch: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'as.dist'
    Rkitsch: no visible global function definition for 'hasArg'
    Rmix: no visible global function definition for 'hasArg'
    Rneighbor: no visible global function definition for 'hasArg'
    Rpars: no visible global function definition for 'hasArg'
    Rpenny: no visible global function definition for 'hasArg'
    Rproml: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'as.dist'
    Rprotpars: no visible global function definition for 'hasArg'
    Rrestdist: no visible global function definition for 'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'as.dist'
    Rrestdist: no visible global function definition for 'as.dist'
    Rrestml: no visible global function definition for 'hasArg'
    Rseqboot: no visible global function definition for 'hasArg'
    Rthreshml: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'read.table'
    Rtreedist: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'hasArg'
    opt.Rdnaml: no visible global function definition for 'hasArg'
    opt.Rdnaml: no visible global function definition for 'optim'
    read.multi.dna: no visible binding for global variable 'read.dna'
    read.phylip.data: no visible global function definition for 'read.dna'
    read.protein: no visible global function definition for 'setNames'
    Undefined global functions or variables:
     as.dist hasArg optim pchisq read.dna read.table setNames
    Consider adding
     importFrom("methods", "hasArg")
     importFrom("stats", "as.dist", "optim", "pchisq", "setNames")
     importFrom("utils", "read.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1-23
Check: R code for possible problems
Result: NOTE
    Rclique: no visible global function definition for 'hasArg'
    Rconsense: no visible global function definition for 'hasArg'
    Rcontml: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'pchisq'
    Rdnacomp: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'as.dist'
    Rdnainvar: no visible global function definition for 'hasArg'
    Rdnaml: no visible global function definition for 'hasArg'
    Rdnapars: no visible global function definition for 'hasArg'
    Rdnapenny: no visible global function definition for 'hasArg'
    Rdollop: no visible global function definition for 'hasArg'
    Rdolpenny: no visible global function definition for 'hasArg'
    Rfitch: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'as.dist'
    Rkitsch: no visible global function definition for 'hasArg'
    Rmix: no visible global function definition for 'hasArg'
    Rneighbor: no visible global function definition for 'hasArg'
    Rpars: no visible global function definition for 'hasArg'
    Rpenny: no visible global function definition for 'hasArg'
    Rproml: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'as.dist'
    Rprotpars: no visible global function definition for 'hasArg'
    Rrestdist: no visible global function definition for 'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'as.dist'
    Rrestdist: no visible global function definition for 'as.dist'
    Rrestml: no visible global function definition for 'hasArg'
    Rseqboot: no visible global function definition for 'hasArg'
    Rthreshml: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'read.table'
    Rtreedist: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'hasArg'
    findPath: no visible global function definition for 'shortPathName'
    opt.Rdnaml: no visible global function definition for 'hasArg'
    opt.Rdnaml: no visible global function definition for 'optim'
    read.multi.dna: no visible binding for global variable 'read.dna'
    read.phylip.data: no visible global function definition for 'read.dna'
    read.protein: no visible global function definition for 'setNames'
    Undefined global functions or variables:
     as.dist hasArg optim pchisq read.dna read.table setNames
     shortPathName
    Consider adding
     importFrom("methods", "hasArg")
     importFrom("stats", "as.dist", "optim", "pchisq", "setNames")
     importFrom("utils", "read.table", "shortPathName")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64