CRAN Package Check Results for Package SourceSet

Last updated on 2022-12-09 18:53:37 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.5 4.06 87.51 91.57 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.5 3.58 69.89 73.47 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.5 130.62 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.5 131.64 NOTE
r-devel-windows-x86_64 0.1.5 20.00 139.00 159.00 NOTE
r-patched-linux-x86_64 0.1.5 4.58 79.82 84.40 NOTE
r-release-linux-x86_64 0.1.5 3.55 81.94 85.49 NOTE
r-release-macos-arm64 0.1.5 39.00 ERROR
r-release-macos-x86_64 0.1.5 52.00 NOTE
r-release-windows-x86_64 0.1.5 19.00 129.00 148.00 NOTE
r-oldrel-macos-arm64 0.1.5 33.00 NOTE
r-oldrel-macos-x86_64 0.1.5 52.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1.5 11.00 121.00 132.00 NOTE

Check Details

Version: 0.1.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'r2cytoscape'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.5
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'r2cytoscape', 'hgu95av2.db'
Flavor: r-release-macos-arm64

Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
    Error(s) in re-building vignettes:
    --- re-building ‘SourceSet.Rmd’ using rmarkdown
    Loading required namespace: mvtnorm
    Loading required package: graph
    Loading required package: BiocGenerics
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which.max, which.min
    
    Identifing all possible orderings..
    Total run time: 0.35 secs
    Identifing all possible orderings..
    Total run time: 0.28 secs
    Loading required package: ALL
    Loading required package: Biobase
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required namespace: hgu95av2.db
    Failed with error: 'there is no package called 'hgu95av2.db''
    Loading required namespace: AnnotationDbi
    Quitting from lines 512-527 (SourceSet.Rmd)
    Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
    error in evaluating the argument 'x' in selecting a method for function 'as.list': object 'org.Hs.egSYMBOL' not found
    --- failed re-building ‘SourceSet.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘SourceSet.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64