Last updated on 2021-04-16 12:55:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.6 | 44.33 | 320.93 | 365.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.6 | 30.92 | 237.54 | 268.46 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.6 | 430.49 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.6 | 422.96 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.0.6 | 82.00 | 365.00 | 447.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.0.6 | OK | ||||
| r-patched-linux-x86_64 | 1.0.6 | 35.23 | 300.60 | 335.83 | OK | |
| r-patched-solaris-x86 | 1.0.6 | 563.80 | WARN | |||
| r-release-linux-x86_64 | 1.0.6 | 36.19 | 302.53 | 338.72 | OK | |
| r-release-macos-x86_64 | 1.0.6 | WARN | ||||
| r-release-windows-ix86+x86_64 | 1.0.6 | 76.00 | 370.00 | 446.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.6 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.6 | 52.00 | 339.00 | 391.00 | OK |
Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘i-introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘i-introduction.Rmd’
--- re-building ‘ii-modules.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'magrittr'
The following object is masked from 'package:raster':
extract
Setting:
options(
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/tmp/Rtmp6JaGuJ/working_dir/RtmpR1aG6X/raster'
reproducible.cachePath = '/tmp/Rtmp6JaGuJ/working_dir/RtmpR1aG6X/Require/cache'
spades.inputPath = '/tmp/RtmpDYaGnw/SpaDES/inputs'
spades.outputPath = '/tmp/RtmpDYaGnw/SpaDES/outputs'
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
2021-04-12 17:18:18 INFO:: total elpsd: 0.0078 secs | 0 checkpoint init 0
2021-04-12 17:18:18 INFO:: total elpsd: 0.02 secs | 0 save init 0
2021-04-12 17:18:18 INFO:: total elpsd: 0.027 secs | 0 progress init 0
2021-04-12 17:18:18 INFO:: total elpsd: 0.034 secs | 0 load init 0
2021-04-12 17:18:18 INFO:: total elpsd: 0.039 secs | 0 randomLandscapes init
2021-04-12 17:18:19 INFO:: total elpsd: 1 secs | 0 fireSpread init 1
2021-04-12 17:18:19 INFO:: total elpsd: 1.1 secs | 0 caribouMovement init 1
2021-04-12 17:18:19 INFO:: total elpsd: 1.2 secs | 0 fireSpread burn 5
2021-04-12 17:18:19 INFO:: total elpsd: 1.4 secs | 0 fireSpread stats 5
2021-04-12 17:18:19 INFO:: total elpsd: 1.4 secs | 0 randomLandscapes plot 1
2021-04-12 17:18:20 INFO:: total elpsd: 2.1 secs | 0 fireSpread plot.init 10
2021-04-12 17:18:20 INFO:: total elpsd: 2.7 secs | 0.08333 caribouMovement p
2021-04-12 17:18:21 INFO:: total elpsd: 3.1 secs | 0.1667 caribouMovement pl
2021-04-12 17:18:21 INFO:: total elpsd: 3.3 secs | 0.25 caribouMovement plot
2021-04-12 17:18:21 INFO:: total elpsd: 3.5 secs | 0.3333 caribouMovement pl
2021-04-12 17:18:21 INFO:: total elpsd: 3.7 secs | 0.4167 caribouMovement pl
2021-04-12 17:18:21 INFO:: total elpsd: 3.9 secs | 0.5 caribouMovement plot
2021-04-12 17:18:22 INFO:: total elpsd: 4.2 secs | 0.5833 caribouMovement pl
2021-04-12 17:18:22 INFO:: total elpsd: 4.4 secs | 0.6667 caribouMovement pl
2021-04-12 17:18:22 INFO:: total elpsd: 4.7 secs | 0.75 caribouMovement plot
2021-04-12 17:18:22 INFO:: total elpsd: 5 secs | 0.8333 caribouMovement plot
2021-04-12 17:18:23 INFO:: total elpsd: 5.1 secs | 0.9167 caribouMovement pl
2021-04-12 17:18:23 INFO:: total elpsd: 5.4 secs | 1 caribouMovement move 5
2021-04-12 17:18:23 INFO:: total elpsd: 5.5 secs | 1 fireSpread burn 5
2021-04-12 17:18:25 INFO:: total elpsd: 7.8 secs | 1 fireSpread stats 5
2021-04-12 17:18:25 INFO:: total elpsd: 7.8 secs | 1 caribouMovement plot 10
2021-04-12 17:18:26 INFO:: total elpsd: 8.1 secs | 1.083 caribouMovement mov
2021-04-12 17:18:26 INFO:: total elpsd: 8.2 secs | 1.083 caribouMovement plo
2021-04-12 17:18:26 INFO:: total elpsd: 8.4 secs | 1.167 caribouMovement mov
2021-04-12 17:18:26 INFO:: total elpsd: 8.4 secs | 1.167 caribouMovement plo
2021-04-12 17:18:26 INFO:: total elpsd: 8.6 secs | 1.25 caribouMovement move
2021-04-12 17:18:26 INFO:: total elpsd: 8.6 secs | 1.25 caribouMovement plot
2021-04-12 17:18:26 INFO:: total elpsd: 9 secs | 1.333 caribouMovement move
2021-04-12 17:18:27 INFO:: total elpsd: 9 secs | 1.333 caribouMovement plot
2021-04-12 17:18:27 INFO:: total elpsd: 9.2 secs | 1.417 caribouMovement mov
2021-04-12 17:18:27 INFO:: total elpsd: 9.4 secs | 1.417 caribouMovement plo
2021-04-12 17:18:27 INFO:: total elpsd: 9.6 secs | 1.5 caribouMovement move
2021-04-12 17:18:27 INFO:: total elpsd: 9.6 secs | 1.5 caribouMovement plot
2021-04-12 17:18:27 INFO:: total elpsd: 10 secs | 1.583 caribouMovement move
2021-04-12 17:18:27 INFO:: total elpsd: 10 secs | 1.583 caribouMovement plot
2021-04-12 17:18:28 INFO:: total elpsd: 10 secs | 1.667 caribouMovement move
2021-04-12 17:18:28 INFO:: total elpsd: 10 secs | 1.667 caribouMovement plot
2021-04-12 17:18:28 INFO:: total elpsd: 11 secs | 1.75 caribouMovement move
2021-04-12 17:18:28 INFO:: total elpsd: 11 secs | 1.75 caribouMovement plot
2021-04-12 17:18:28 INFO:: total elpsd: 11 secs | 1.833 caribouMovement move
2021-04-12 17:18:28 INFO:: total elpsd: 11 secs | 1.833 caribouMovement plot
2021-04-12 17:18:29 INFO:: total elpsd: 11 secs | 1.917 caribouMovement move
2021-04-12 17:18:29 INFO:: total elpsd: 11 secs | 1.917 caribouMovement plot
2021-04-12 17:18:29 INFO:: total elpsd: 12 secs | 2 fireSpread burn 5
2021-04-12 17:18:29 INFO:: total elpsd: 12 secs | 2 caribouMovement move 5
2021-04-12 17:18:29 INFO:: total elpsd: 12 secs | 2 fireSpread stats 5
2021-04-12 17:18:29 INFO:: total elpsd: 12 secs | 2 caribouMovement plot 10
simList saved in
SpaDES.core:::.pkgEnv$.sim
It will be deleted at next spades() call.
Quitting from lines 389-391 (ii-modules.Rmd)
Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘ii-modules.Rmd’
--- re-building ‘iii-cache.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'raster'
The following object is masked from 'package:magrittr':
extract
Loading required package: quickPlot
Attaching package: 'SpaDES.core'
The following objects are masked from 'package:stats':
end, start
The following object is masked from 'package:utils':
citation
Setting:
options(
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/tmp/Rtmp6JaGuJ/working_dir/RtmpHMaGF0/raster'
reproducible.cachePath = '/tmp/Rtmp6JaGuJ/working_dir/RtmpHMaGF0/Require/cache'
spades.inputPath = '/tmp/RtmpDYaGnw/SpaDES/inputs'
spades.outputPath = '/tmp/RtmpDYaGnw/SpaDES/outputs'
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
Loading required package: RColorBrewer
--- finished re-building ‘iii-cache.Rmd’
--- re-building ‘iv-advanced.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘iv-advanced.Rmd’
--- re-building ‘v-automated-testing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘v-automated-testing.Rmd’
SUMMARY: processing the following file failed:
‘ii-modules.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘i-introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘i-introduction.Rmd’
--- re-building ‘ii-modules.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'magrittr'
The following object is masked from 'package:raster':
extract
Setting:
options(
spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/Volumes/Temp/tmp/Rtmpz1b8I7/raster'
reproducible.cachePath = '/Volumes/Temp/tmp/Rtmpz1b8I7/Require/cache'
spades.inputPath = '/Volumes/Temp/tmp/Rtmpsr9lsm/SpaDES/inputs'
spades.outputPath = '/Volumes/Temp/tmp/Rtmpsr9lsm/SpaDES/outputs'
spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
2021-02-25 08:40:52 INFO:: total elpsd: 0.002 secs | 0 checkpoint init 0
2021-02-25 08:40:52 INFO:: total elpsd: 0.0055 secs | 0 save init 0
2021-02-25 08:40:52 INFO:: total elpsd: 0.0078 secs | 0 progress init 0
2021-02-25 08:40:52 INFO:: total elpsd: 0.0098 secs | 0 load init 0
2021-02-25 08:40:52 INFO:: total elpsd: 0.012 secs | 0 randomLandscapes init
2021-02-25 08:40:52 INFO:: total elpsd: 0.23 secs | 0 fireSpread init 1
2021-02-25 08:40:52 INFO:: total elpsd: 0.24 secs | 0 caribouMovement init 1
2021-02-25 08:40:52 INFO:: total elpsd: 0.25 secs | 0 fireSpread burn 5
2021-02-25 08:40:52 INFO:: total elpsd: 0.29 secs | 0 fireSpread stats 5
2021-02-25 08:40:52 INFO:: total elpsd: 0.29 secs | 0 randomLandscapes plot
2021-02-25 08:40:53 INFO:: total elpsd: 0.41 secs | 0 fireSpread plot.init 1
2021-02-25 08:40:53 INFO:: total elpsd: 0.49 secs | 0.08333 caribouMovement
2021-02-25 08:40:53 INFO:: total elpsd: 0.55 secs | 0.1667 caribouMovement p
2021-02-25 08:40:53 INFO:: total elpsd: 0.61 secs | 0.25 caribouMovement plo
2021-02-25 08:40:53 INFO:: total elpsd: 0.67 secs | 0.3333 caribouMovement p
2021-02-25 08:40:53 INFO:: total elpsd: 0.73 secs | 0.4167 caribouMovement p
2021-02-25 08:40:53 INFO:: total elpsd: 0.8 secs | 0.5 caribouMovement plot
2021-02-25 08:40:53 INFO:: total elpsd: 0.86 secs | 0.5833 caribouMovement p
2021-02-25 08:40:53 INFO:: total elpsd: 0.92 secs | 0.6667 caribouMovement p
2021-02-25 08:40:53 INFO:: total elpsd: 0.99 secs | 0.75 caribouMovement plo
2021-02-25 08:40:53 INFO:: total elpsd: 1.1 secs | 0.8333 caribouMovement pl
2021-02-25 08:40:53 INFO:: total elpsd: 1.1 secs | 0.9167 caribouMovement pl
2021-02-25 08:40:53 INFO:: total elpsd: 1.2 secs | 1 caribouMovement move 5
2021-02-25 08:40:53 INFO:: total elpsd: 1.2 secs | 1 fireSpread burn 5
2021-02-25 08:40:54 INFO:: total elpsd: 1.6 secs | 1 fireSpread stats 5
2021-02-25 08:40:54 INFO:: total elpsd: 1.6 secs | 1 caribouMovement plot 10
2021-02-25 08:40:54 INFO:: total elpsd: 1.6 secs | 1.083 caribouMovement mov
2021-02-25 08:40:54 INFO:: total elpsd: 1.7 secs | 1.083 caribouMovement plo
2021-02-25 08:40:54 INFO:: total elpsd: 1.7 secs | 1.167 caribouMovement mov
2021-02-25 08:40:54 INFO:: total elpsd: 1.7 secs | 1.167 caribouMovement plo
2021-02-25 08:40:54 INFO:: total elpsd: 1.8 secs | 1.25 caribouMovement move
2021-02-25 08:40:54 INFO:: total elpsd: 1.8 secs | 1.25 caribouMovement plot
2021-02-25 08:40:54 INFO:: total elpsd: 1.9 secs | 1.333 caribouMovement mov
2021-02-25 08:40:54 INFO:: total elpsd: 1.9 secs | 1.333 caribouMovement plo
2021-02-25 08:40:54 INFO:: total elpsd: 1.9 secs | 1.417 caribouMovement mov
2021-02-25 08:40:54 INFO:: total elpsd: 1.9 secs | 1.417 caribouMovement plo
2021-02-25 08:40:54 INFO:: total elpsd: 2 secs | 1.5 caribouMovement move 5
2021-02-25 08:40:54 INFO:: total elpsd: 2 secs | 1.5 caribouMovement plot 10
2021-02-25 08:40:54 INFO:: total elpsd: 2.1 secs | 1.583 caribouMovement mov
2021-02-25 08:40:54 INFO:: total elpsd: 2.1 secs | 1.583 caribouMovement plo
2021-02-25 08:40:54 INFO:: total elpsd: 2.1 secs | 1.667 caribouMovement mov
2021-02-25 08:40:54 INFO:: total elpsd: 2.2 secs | 1.667 caribouMovement plo
2021-02-25 08:40:54 INFO:: total elpsd: 2.2 secs | 1.75 caribouMovement move
2021-02-25 08:40:54 INFO:: total elpsd: 2.2 secs | 1.75 caribouMovement plot
2021-02-25 08:40:54 INFO:: total elpsd: 2.3 secs | 1.833 caribouMovement mov
2021-02-25 08:40:54 INFO:: total elpsd: 2.3 secs | 1.833 caribouMovement plo
2021-02-25 08:40:55 INFO:: total elpsd: 2.4 secs | 1.917 caribouMovement mov
2021-02-25 08:40:55 INFO:: total elpsd: 2.4 secs | 1.917 caribouMovement plo
2021-02-25 08:40:55 INFO:: total elpsd: 2.4 secs | 2 fireSpread burn 5
2021-02-25 08:40:55 INFO:: total elpsd: 2.4 secs | 2 caribouMovement move 5
2021-02-25 08:40:55 INFO:: total elpsd: 2.4 secs | 2 fireSpread stats 5
2021-02-25 08:40:55 INFO:: total elpsd: 2.4 secs | 2 caribouMovement plot 10
simList saved in
SpaDES.core:::.pkgEnv$.sim
It will be deleted at next spades() call.
Quitting from lines 389-391 (ii-modules.Rmd)
Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘ii-modules.Rmd’
--- re-building ‘iii-cache.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'raster'
The following object is masked from 'package:magrittr':
extract
Loading required package: quickPlot
Attaching package: 'SpaDES.core'
The following objects are masked from 'package:stats':
end, start
The following object is masked from 'package:utils':
citation
Setting:
options(
spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/Volumes/Temp/tmp/RtmpmHqENY/raster'
reproducible.cachePath = '/Volumes/Temp/tmp/RtmpmHqENY/Require/cache'
spades.inputPath = '/Volumes/Temp/tmp/Rtmpsr9lsm/SpaDES/inputs'
spades.outputPath = '/Volumes/Temp/tmp/Rtmpsr9lsm/SpaDES/outputs'
spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Loading required package: RColorBrewer
--- finished re-building ‘iii-cache.Rmd’
--- re-building ‘iv-advanced.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘iv-advanced.Rmd’
--- re-building ‘v-automated-testing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘v-automated-testing.Rmd’
SUMMARY: processing the following file failed:
‘ii-modules.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.6
Check: dependencies in R code
Result: NOTE
No protocol specified
No protocol specified
Flavor: r-oldrel-macos-x86_64
Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘i-introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘i-introduction.Rmd’
--- re-building ‘ii-modules.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'magrittr'
The following object is masked from 'package:raster':
extract
Setting:
options(
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/private/tmp/RtmpxgQIeu/raster'
reproducible.cachePath = '/private/tmp/RtmpxgQIeu/Require/cache'
spades.inputPath = '/private/tmp/RtmpZJkGmA/SpaDES/inputs'
spades.outputPath = '/private/tmp/RtmpZJkGmA/SpaDES/outputs'
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
2021-02-21 06:10:51 INFO:: total elpsd: 0.0028 secs | 0 checkpoint init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.0087 secs | 0 save init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.012 secs | 0 progress init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.015 secs | 0 load init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.018 secs | 0 randomLandscapes init
2021-02-21 06:10:52 INFO:: total elpsd: 0.46 secs | 0 fireSpread init 1
2021-02-21 06:10:52 INFO:: total elpsd: 0.48 secs | 0 caribouMovement init 1
2021-02-21 06:10:52 INFO:: total elpsd: 0.49 secs | 0 fireSpread burn 5
2021-02-21 06:10:52 INFO:: total elpsd: 0.6 secs | 0 fireSpread stats 5
2021-02-21 06:10:52 INFO:: total elpsd: 0.61 secs | 0 randomLandscapes plot
2021-02-21 06:10:52 INFO:: total elpsd: 0.83 secs | 0 fireSpread plot.init 1
2021-02-21 06:10:52 INFO:: total elpsd: 1 secs | 0.08333 caribouMovement plo
2021-02-21 06:10:52 INFO:: total elpsd: 1.1 secs | 0.1667 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 1.3 secs | 0.25 caribouMovement plot
2021-02-21 06:10:53 INFO:: total elpsd: 1.4 secs | 0.3333 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 1.6 secs | 0.4167 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 1.7 secs | 0.5 caribouMovement plot
2021-02-21 06:10:53 INFO:: total elpsd: 1.8 secs | 0.5833 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 2 secs | 0.6667 caribouMovement plot
2021-02-21 06:10:53 INFO:: total elpsd: 2.1 secs | 0.75 caribouMovement plot
2021-02-21 06:10:54 INFO:: total elpsd: 2.2 secs | 0.8333 caribouMovement pl
2021-02-21 06:10:54 INFO:: total elpsd: 2.4 secs | 0.9167 caribouMovement pl
2021-02-21 06:10:54 INFO:: total elpsd: 2.5 secs | 1 caribouMovement move 5
2021-02-21 06:10:54 INFO:: total elpsd: 2.6 secs | 1 fireSpread burn 5
2021-02-21 06:10:55 INFO:: total elpsd: 3.4 secs | 1 fireSpread stats 5
2021-02-21 06:10:55 INFO:: total elpsd: 3.4 secs | 1 caribouMovement plot 10
2021-02-21 06:10:55 INFO:: total elpsd: 3.5 secs | 1.083 caribouMovement mov
2021-02-21 06:10:55 INFO:: total elpsd: 3.6 secs | 1.083 caribouMovement plo
2021-02-21 06:10:55 INFO:: total elpsd: 3.7 secs | 1.167 caribouMovement mov
2021-02-21 06:10:55 INFO:: total elpsd: 3.7 secs | 1.167 caribouMovement plo
2021-02-21 06:10:55 INFO:: total elpsd: 3.9 secs | 1.25 caribouMovement move
2021-02-21 06:10:55 INFO:: total elpsd: 3.9 secs | 1.25 caribouMovement plot
2021-02-21 06:10:55 INFO:: total elpsd: 4 secs | 1.333 caribouMovement move
2021-02-21 06:10:55 INFO:: total elpsd: 4 secs | 1.333 caribouMovement plot
2021-02-21 06:10:56 INFO:: total elpsd: 4.2 secs | 1.417 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.2 secs | 1.417 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 4.3 secs | 1.5 caribouMovement move
2021-02-21 06:10:56 INFO:: total elpsd: 4.3 secs | 1.5 caribouMovement plot
2021-02-21 06:10:56 INFO:: total elpsd: 4.5 secs | 1.583 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.5 secs | 1.583 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 4.6 secs | 1.667 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.6 secs | 1.667 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 4.8 secs | 1.75 caribouMovement move
2021-02-21 06:10:56 INFO:: total elpsd: 4.8 secs | 1.75 caribouMovement plot
2021-02-21 06:10:56 INFO:: total elpsd: 4.9 secs | 1.833 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.9 secs | 1.833 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 5.1 secs | 1.917 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 5.1 secs | 1.917 caribouMovement plo
2021-02-21 06:10:57 INFO:: total elpsd: 5.2 secs | 2 fireSpread burn 5
2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 caribouMovement move 5
2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 fireSpread stats 5
2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 caribouMovement plot 10
simList saved in
SpaDES.core:::.pkgEnv$.sim
It will be deleted at next spades() call.
Quitting from lines 389-391 (ii-modules.Rmd)
Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘ii-modules.Rmd’
--- re-building ‘iii-cache.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'raster'
The following object is masked from 'package:magrittr':
extract
Loading required package: quickPlot
Attaching package: 'SpaDES.core'
The following objects are masked from 'package:stats':
end, start
The following object is masked from 'package:utils':
citation
Setting:
options(
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/private/tmp/RtmpT9WZrK/raster'
reproducible.cachePath = '/private/tmp/RtmpT9WZrK/Require/cache'
spades.inputPath = '/private/tmp/RtmpZJkGmA/SpaDES/inputs'
spades.outputPath = '/private/tmp/RtmpZJkGmA/SpaDES/outputs'
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Loading required package: RColorBrewer
--- finished re-building ‘iii-cache.Rmd’
--- re-building ‘iv-advanced.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘iv-advanced.Rmd’
--- re-building ‘v-automated-testing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘v-automated-testing.Rmd’
SUMMARY: processing the following file failed:
‘ii-modules.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64