CRAN Package Check Results for Package SpatialExtremes

Last updated on 2017-07-20 06:47:34.

Check Details

Version: 2.0-2
Check: R code for possible problems
Result: NOTE
    .brownresnickstderr: no visible global function definition for ‘var’
    .extremaltstderr: no visible global function definition for ‘var’
    .geomgaussstderr: no visible global function definition for ‘var’
    .getTrendSurfCoeffNames: no visible global function definition for
     ‘terms’
    .schlatherindstderr: no visible global function definition for ‘var’
    .schlatherstderr: no visible global function definition for ‘var’
    .smithstderr: no visible global function definition for ‘var’
    .spatgevstderr: no visible global function definition for ‘var’
    .start.brownresnick: no visible global function definition for
     ‘predict’
    .start.extremalt: no visible global function definition for ‘predict’
    .start.geomgauss: no visible global function definition for ‘predict’
    .start.nsgeomgauss: no visible global function definition for ‘terms’
    .start.nsgeomgauss: no visible global function definition for ‘predict’
    .start.schlather: no visible global function definition for ‘predict’
    .start.schlatherind: no visible global function definition for
     ‘predict’
    .start.smith: no visible global function definition for ‘predict’
    TIC.default: no visible global function definition for ‘deviance’
    anova.maxstab: no visible global function definition for ‘fitted’
    anova.maxstab: no visible global function definition for ‘deviance’
    anova.maxstab: no visible global function definition for ‘pchisq’
    anova.spatgev: no visible global function definition for ‘fitted’
    anova.spatgev: no visible global function definition for ‘deviance’
    anova.spatgev: no visible global function definition for ‘pchisq’
    brownresnickform: no visible global function definition for ‘update’
    brownresnickform: no visible global function definition for ‘nlminb’
    brownresnickform: no visible global function definition for ‘nlm’
    brownresnickform: no visible global function definition for ‘optim’
    brownresnickform : ext.coeff: no visible global function definition for
     ‘pnorm’
    brownresnickform : conc.prob: no visible global function definition for
     ‘rnorm’
    brownresnickform : conc.prob: no visible global function definition for
     ‘pnorm’
    brownresnickfull: no visible global function definition for ‘nlminb’
    brownresnickfull: no visible global function definition for ‘nlm’
    brownresnickfull: no visible global function definition for ‘optim’
    brownresnickfull : ext.coeff: no visible global function definition for
     ‘pnorm’
    brownresnickfull : conc.prob: no visible global function definition for
     ‘rnorm’
    brownresnickfull : conc.prob: no visible global function definition for
     ‘pnorm’
    concprob: no visible global function definition for ‘quantile’
    concprob: no visible global function definition for ‘points’
    concprob: no visible global function definition for ‘curve’
    concurrencemap: no visible global function definition for ‘cm.colors’
    concurrencemap: no visible global function definition for ‘layout’
    concurrencemap: no visible global function definition for ‘image’
    concurrencemap: no visible global function definition for ‘par’
    concurrencemap: no visible global function definition for ‘plot.new’
    concurrencemap: no visible global function definition for ‘plot.window’
    concurrencemap: no visible global function definition for ‘rect’
    concurrencemap: no visible global function definition for ‘axis’
    concurrencemap: no visible global function definition for ‘box’
    condmap: no visible global function definition for ‘terrain.colors’
    condmap: no visible global function definition for ‘predict’
    condmap : cond.prob: no visible global function definition for ‘pnorm’
    condmap: no visible global function definition for ‘uniroot’
    condmap: no visible global function definition for ‘image’
    condmap: no visible global function definition for ‘contour’
    covariance: no visible global function definition for ‘optimize’
    covariance: no visible global function definition for ‘points’
    cv: no visible global function definition for ‘nlm’
    cv: no visible global function definition for ‘sd’
    extcoeff : extCoeff: no visible global function definition for ‘pnorm’
    extcoeff: no visible global function definition for ‘optimize’
    extcoeff: no visible global function definition for ‘contour’
    extremaltform: no visible global function definition for ‘update’
    extremaltform: no visible global function definition for ‘nlminb’
    extremaltform: no visible global function definition for ‘nlm’
    extremaltform: no visible global function definition for ‘optim’
    extremaltform : ext.coeff: no visible global function definition for
     ‘pt’
    extremaltform : conc.prob: no visible global function definition for
     ‘pt’
    extremaltfull: no visible global function definition for ‘nlminb’
    extremaltfull: no visible global function definition for ‘nlm’
    extremaltfull: no visible global function definition for ‘optim’
    extremaltfull : ext.coeff: no visible global function definition for
     ‘pt’
    extremaltfull : conc.prob: no visible global function definition for
     ‘pt’
    fitcopula: no visible global function definition for ‘update’
    fitcopula: no visible global function definition for ‘nlminb’
    fitcopula: no visible global function definition for ‘nlm’
    fitcopula: no visible global function definition for ‘optim’
    fitcopula : ext.coeff: no visible global function definition for ‘pt’
    fitcovariance: no visible global function definition for ‘optim’
    fitcovariance : ext.coeff: no visible global function definition for
     ‘pt’
    fitcovariance : ext.coeff: no visible global function definition for
     ‘pnorm’
    fitcovmat: no visible global function definition for ‘qnorm’
    fitcovmat: no visible global function definition for ‘optim’
    fitcovmat : ext.coeff: no visible global function definition for
     ‘pnorm’
    fitextcoeff: no visible global function definition for ‘optimize’
    fitextcoeff: no visible global function definition for ‘ppoints’
    fitextcoeff: no visible binding for global variable ‘var’
    fitextcoeff: no visible global function definition for ‘par’
    fitextcoeff: no visible global function definition for ‘lines’
    fitextcoeff: no visible global function definition for ‘predict’
    fitextcoeff: no visible global function definition for ‘points’
    fitspatgev: no visible global function definition for ‘update’
    fitspatgev: no visible global function definition for ‘nlminb’
    fitspatgev: no visible global function definition for ‘nlm’
    fitspatgev: no visible global function definition for ‘optim’
    fmadogram: no visible global function definition for ‘predict’
    fmadogram: no visible global function definition for ‘quantile’
    fmadogram: no visible global function definition for ‘par’
    fmadogram: no visible global function definition for ‘points’
    fmadogram: no visible global function definition for ‘curve’
    fmadogram: no visible global function definition for ‘plot’
    gcv: no visible global function definition for ‘nlm’
    gcv: no visible global function definition for ‘sd’
    geomgaussform: no visible global function definition for ‘update’
    geomgaussform: no visible global function definition for ‘nlminb’
    geomgaussform: no visible global function definition for ‘nlm’
    geomgaussform: no visible global function definition for ‘optim’
    geomgaussform : ext.coeff: no visible global function definition for
     ‘pnorm’
    geomgaussfull: no visible global function definition for ‘nlminb’
    geomgaussfull: no visible global function definition for ‘nlm’
    geomgaussfull: no visible global function definition for ‘optim’
    geomgaussfull : ext.coeff: no visible global function definition for
     ‘pnorm’
    gevmle: no visible global function definition for ‘var’
    gevmle: no visible global function definition for ‘optim’
    gpdmle: no visible global function definition for ‘optim’
    kriging: no visible global function definition for ‘dist’
    latent: no visible global function definition for ‘dist’
    latent: no visible global function definition for ‘update’
    lmadogram: no visible global function definition for ‘terrain.colors’
    lmadogram: no visible global function definition for ‘quantile’
    lmadogram: no visible global function definition for ‘persp’
    logLik.copula: no visible global function definition for ‘fitted’
    logLik.maxstab: no visible global function definition for ‘fitted’
    madogram: no visible global function definition for ‘predict’
    madogram: no visible global function definition for ‘quantile’
    madogram: no visible global function definition for ‘par’
    madogram: no visible global function definition for ‘points’
    madogram: no visible global function definition for ‘curve’
    madogram: no visible global function definition for ‘plot’
    map: no visible global function definition for ‘terrain.colors’
    map: no visible global function definition for ‘predict’
    map: no visible global function definition for ‘image’
    map: no visible global function definition for ‘contour’
    map.latent: no visible global function definition for ‘terrain.colors’
    map.latent: no visible binding for global variable ‘quantile’
    map.latent: no visible global function definition for ‘par’
    map.latent: no visible global function definition for ‘layout’
    map.latent: no visible global function definition for ‘image’
    map.latent: no visible global function definition for ‘contour’
    map.latent: no visible global function definition for ‘points’
    map.latent: no visible global function definition for ‘plot.new’
    map.latent: no visible global function definition for ‘plot.window’
    map.latent: no visible global function definition for ‘rect’
    map.latent: no visible global function definition for ‘axis’
    map.latent: no visible global function definition for ‘box’
    modeldef.lm : init.fun: no visible global function definition for ‘lm’
    modeldef.lm: no visible global function definition for ‘model.matrix’
    plot.copula: no visible global function definition for ‘par’
    plot.copula: no visible global function definition for ‘layout’
    plot.copula: no visible global function definition for ‘predict’
    plot.copula: no visible binding for global variable ‘quantile’
    plot.copula: no visible global function definition for ‘matplot’
    plot.copula: no visible global function definition for ‘curve’
    plot.copula: no visible global function definition for ‘points’
    plot.copula: no visible global function definition for ‘abline’
    plot.copula: no visible global function definition for ‘legend’
    plot.copula: no visible global function definition for ‘plot’
    plot.maxstab: no visible global function definition for ‘par’
    plot.maxstab: no visible global function definition for ‘layout’
    plot.maxstab: no visible global function definition for ‘predict’
    plot.maxstab: no visible global function definition for ‘na.omit’
    plot.maxstab: no visible binding for global variable ‘quantile’
    plot.maxstab: no visible global function definition for ‘matplot’
    plot.maxstab: no visible global function definition for ‘curve’
    plot.maxstab: no visible global function definition for ‘points’
    plot.maxstab: no visible global function definition for ‘plot’
    plot.maxstab: no visible global function definition for ‘text’
    plot.maxstab: no visible global function definition for ‘abline’
    plot.maxstab: no visible global function definition for ‘legend’
    print.copula: no visible global function definition for ‘AIC’
    print.latent: no visible binding for global variable ‘quantile’
    profile.maxstab: no visible global function definition for ‘optim’
    profile.maxstab: no visible global function definition for ‘qchisq’
    profile.maxstab: no visible global function definition for ‘abline’
    profile2d.maxstab: no visible global function definition for ‘optim’
    profile2d.maxstab: no visible global function definition for
     ‘filled.contour’
    qqextcoeff: no visible global function definition for ‘plot’
    qqextcoeff: no visible global function definition for ‘abline’
    qqgev: no visible global function definition for ‘predict’
    qqgev: no visible global function definition for ‘par’
    qqgev: no visible global function definition for ‘plot’
    qqgev: no visible global function definition for ‘abline’
    qqgev: no visible global function definition for ‘hist’
    qqgev: no visible global function definition for ‘axis’
    rb: no visible global function definition for ‘dist’
    rcopula: no visible global function definition for ‘pnorm’
    rcopula: no visible global function definition for ‘rchisq’
    rcopula: no visible global function definition for ‘pt’
    rgev: no visible global function definition for ‘rexp’
    rgpd: no visible global function definition for ‘rexp’
    rgpd: no visible global function definition for ‘runif’
    schlatherform: no visible global function definition for ‘update’
    schlatherform: no visible global function definition for ‘nlminb’
    schlatherform: no visible global function definition for ‘nlm’
    schlatherform: no visible global function definition for ‘optim’
    schlatherfull: no visible global function definition for ‘nlminb’
    schlatherfull: no visible global function definition for ‘nlm’
    schlatherfull: no visible global function definition for ‘optim’
    schlatherindform: no visible global function definition for ‘update’
    schlatherindform: no visible global function definition for ‘nlminb’
    schlatherindform: no visible global function definition for ‘nlm’
    schlatherindform: no visible global function definition for ‘optim’
    schlatherindfull: no visible global function definition for ‘nlminb’
    schlatherindfull: no visible global function definition for ‘nlm’
    schlatherindfull: no visible global function definition for ‘optim’
    smithform: no visible global function definition for ‘update’
    smithform: no visible global function definition for ‘nlminb’
    smithform: no visible global function definition for ‘nlm’
    smithform: no visible global function definition for ‘optim’
    smithform : ext.coeff: no visible global function definition for
     ‘pnorm’
    smithfull: no visible global function definition for ‘nlminb’
    smithfull: no visible global function definition for ‘nlm’
    smithfull: no visible global function definition for ‘optim’
    smithfull : ext.coeff: no visible global function definition for
     ‘pnorm’
    swiss: no visible global function definition for ‘plot’
    swiss: no visible global function definition for ‘lines’
    swiss: no visible global function definition for ‘polygon’
    swiss: no visible global function definition for ‘points’
    swiss: no visible global function definition for ‘text’
    symbolplot: no visible global function definition for ‘layout’
    symbolplot: no visible global function definition for ‘par’
    symbolplot: no visible global function definition for ‘dist’
    symbolplot: no visible global function definition for ‘symbols’
    symbolplot: no visible global function definition for ‘plot’
    symbolplot: no visible global function definition for ‘text’
    symbolplot: no visible binding for global variable ‘median’
    variogram: no visible global function definition for ‘quantile’
    variogram: no visible global function definition for ‘points’
    variogram: no visible global function definition for ‘plot’
    vdc: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     AIC abline axis box cm.colors contour curve deviance dist
     filled.contour fitted hist image layout legend lines lm matplot
     median model.matrix na.omit nlm nlminb optim optimize par pchisq
     persp plot plot.new plot.window pnorm points polygon ppoints predict
     pt qchisq qnorm quantile rchisq rect rexp rnorm runif sd symbols
     terms terrain.colors text uniroot update var
    Consider adding
     importFrom("grDevices", "cm.colors", "terrain.colors")
     importFrom("graphics", "abline", "axis", "box", "contour", "curve",
     "filled.contour", "hist", "image", "layout", "legend",
     "lines", "matplot", "par", "persp", "plot", "plot.new",
     "plot.window", "points", "polygon", "rect", "symbols",
     "text")
     importFrom("stats", "AIC", "deviance", "dist", "fitted", "lm",
     "median", "model.matrix", "na.omit", "nlm", "nlminb",
     "optim", "optimize", "pchisq", "pnorm", "ppoints",
     "predict", "pt", "qchisq", "qnorm", "quantile", "rchisq",
     "rexp", "rnorm", "runif", "sd", "terms", "uniroot",
     "update", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.0-2
Check: compiled code
Result: NOTE
    File ‘SpatialExtremes/libs/SpatialExtremes.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0-2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in optim(unlist(start), obj.fun, hessian = FALSE, control = control, :
     unknown names in control: cov11
    Warning in Dev * c :
     Recycling array of length 1 in vector-array arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'SpatialExtremesGuide.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `fullpage.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.2 \usepackage
     {amsmath,amsfonts,amsthm}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64