CRAN Package Check Results for Package SpatioTemporal

Last updated on 2017-07-20 08:49:20.

Check Details

Version: 1.1.7
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘Rd_examples’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.7
Check: R code for possible problems
Result: NOTE
    MCMC.STmodel: no visible global function definition for ‘rnorm’
    MCMC.STmodel: no visible global function definition for ‘runif’
    SVDsmooth : <anonymous>: no visible global function definition for
     ‘smooth.spline’
    SVDsmooth : <anonymous>: no visible global function definition for ‘sd’
    SVDsmoothCV: no visible global function definition for ‘lm’
    SVDsmoothCV: no visible global function definition for ‘extractAIC’
    SVDsmoothCV: no visible binding for global variable ‘weighted.mean’
    SVDsmoothCV: no visible global function definition for ‘weighted.mean’
    boxplot.SVDcv: no visible global function definition for ‘par’
    createLUR: no visible global function definition for ‘model.matrix’
    createSTmodel: no visible binding for global variable ‘sd’
    detrendSTdata: no visible binding for global variable ‘lm’
    estimate.STmodel: no visible global function definition for ‘optim’
    estimateBetaFields: no visible global function definition for ‘lm’
    estimateBetaFields: no visible global function definition for
     ‘coefficients’
    estimateBetaFields: no visible global function definition for ‘vcov’
    internalCreateTrendFnc : trend.fnc: no visible global function
     definition for ‘spline’
    internalPlotPredictions: no visible global function definition for
     ‘qnorm’
    internalPlotPredictions: no visible global function definition for
     ‘polygon’
    internalPlotPredictions: no visible global function definition for
     ‘lines’
    internalPlotPredictions: no visible global function definition for
     ‘points’
    internalPlotPredictions: no visible global function definition for
     ‘abline’
    internalQQnormPlot: no visible global function definition for ‘abline’
    internalQQnormPlot: no visible global function definition for ‘qqline’
    internalScatterPlot: no visible global function definition for ‘points’
    internalScatterPlot: no visible binding for global variable
     ‘loess.smooth’
    internalScatterPlot: no visible global function definition for ‘lines’
    internalSummaryPredCVSTmodel: no visible global function definition for
     ‘var’
    internalSummaryPredCVSTmodel: no visible global function definition for
     ‘qnorm’
    plot.STdata: no visible global function definition for ‘lm’
    plot.STdata: no visible binding for global variable ‘na.pass’
    plot.STdata: no visible binding for global variable ‘acf’
    plot.STdata: no visible binding for global variable ‘pacf’
    plot.STdata: no visible global function definition for ‘points’
    plot.STdata: no visible global function definition for ‘lines’
    plot.STdata: no visible global function definition for ‘legend’
    plot.SVDcv: no visible global function definition for ‘par’
    plot.SVDcv: no visible global function definition for ‘lines’
    plot.SVDcv : <anonymous>: no visible global function definition for
     ‘points’
    plot.SVDcv : <anonymous>: no visible global function definition for
     ‘abline’
    plot.density.mcmcSTmodel: no visible global function definition for
     ‘dnorm’
    plot.density.mcmcSTmodel: no visible global function definition for
     ‘lines’
    plot.mcmcSTmodel: no visible global function definition for ‘lines’
    predictNaive: no visible global function definition for ‘lm’
    print.predictSTmodel: no visible global function definition for ‘str’
    processLUR: no visible global function definition for ‘as.formula’
    simulate.STmodel: no visible global function definition for ‘rnorm’
    updateCovf: no visible global function definition for ‘as.formula’
    updateCovf: no visible global function definition for ‘model.frame’
    updateCovf: no visible global function definition for ‘model.matrix’
    updateCovf : <anonymous>: no visible global function definition for
     ‘model.matrix’
    Undefined global functions or variables:
     abline acf as.formula coefficients dnorm extractAIC legend lines lm
     loess.smooth model.frame model.matrix na.pass optim pacf par points
     polygon qnorm qqline rnorm runif sd smooth.spline spline str var vcov
     weighted.mean
    Consider adding
     importFrom("graphics", "abline", "legend", "lines", "par", "points",
     "polygon")
     importFrom("stats", "acf", "as.formula", "coefficients", "dnorm",
     "extractAIC", "lm", "loess.smooth", "model.frame",
     "model.matrix", "na.pass", "optim", "pacf", "qnorm",
     "qqline", "rnorm", "runif", "sd", "smooth.spline", "spline",
     "var", "vcov", "weighted.mean")
     importFrom("utils", "str")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.1.7
Check: compiled code
Result: NOTE
    File ‘SpatioTemporal/libs/SpatioTemporal.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.7
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    MCMC.STmodel: no visible global function definition for 'rnorm'
    MCMC.STmodel: no visible global function definition for 'runif'
    SVDsmooth : <anonymous>: no visible global function definition for
     'smooth.spline'
    SVDsmooth : <anonymous>: no visible global function definition for 'sd'
    SVDsmoothCV: no visible global function definition for 'lm'
    SVDsmoothCV: no visible global function definition for 'extractAIC'
    SVDsmoothCV: no visible binding for global variable 'weighted.mean'
    SVDsmoothCV: no visible global function definition for 'weighted.mean'
    boxplot.SVDcv: no visible global function definition for 'par'
    createLUR: no visible global function definition for 'model.matrix'
    createSTmodel: no visible binding for global variable 'sd'
    detrendSTdata: no visible binding for global variable 'lm'
    estimate.STmodel: no visible global function definition for 'optim'
    estimateBetaFields: no visible global function definition for 'lm'
    estimateBetaFields: no visible global function definition for
     'coefficients'
    estimateBetaFields: no visible global function definition for 'vcov'
    internalCreateTrendFnc : trend.fnc: no visible global function
     definition for 'spline'
    internalPlotPredictions: no visible global function definition for
     'qnorm'
    internalPlotPredictions: no visible global function definition for
     'polygon'
    internalPlotPredictions: no visible global function definition for
     'lines'
    internalPlotPredictions: no visible global function definition for
     'points'
    internalPlotPredictions: no visible global function definition for
     'abline'
    internalQQnormPlot: no visible global function definition for 'abline'
    internalQQnormPlot: no visible global function definition for 'qqline'
    internalScatterPlot: no visible global function definition for 'points'
    internalScatterPlot: no visible binding for global variable
     'loess.smooth'
    internalScatterPlot: no visible global function definition for 'lines'
    internalSummaryPredCVSTmodel: no visible global function definition for
     'var'
    internalSummaryPredCVSTmodel: no visible global function definition for
     'qnorm'
    plot.STdata: no visible global function definition for 'lm'
    plot.STdata: no visible binding for global variable 'na.pass'
    plot.STdata: no visible binding for global variable 'acf'
    plot.STdata: no visible binding for global variable 'pacf'
    plot.STdata: no visible global function definition for 'points'
    plot.STdata: no visible global function definition for 'lines'
    plot.STdata: no visible global function definition for 'legend'
    plot.SVDcv: no visible global function definition for 'par'
    plot.SVDcv: no visible global function definition for 'lines'
    plot.SVDcv : <anonymous>: no visible global function definition for
     'points'
    plot.SVDcv : <anonymous>: no visible global function definition for
     'abline'
    plot.density.mcmcSTmodel: no visible global function definition for
     'dnorm'
    plot.density.mcmcSTmodel: no visible global function definition for
     'lines'
    plot.mcmcSTmodel: no visible global function definition for 'lines'
    predictNaive: no visible global function definition for 'lm'
    print.predictSTmodel: no visible global function definition for 'str'
    processLUR: no visible global function definition for 'as.formula'
    simulate.STmodel: no visible global function definition for 'rnorm'
    updateCovf: no visible global function definition for 'as.formula'
    updateCovf: no visible global function definition for 'model.frame'
    updateCovf: no visible global function definition for 'model.matrix'
    updateCovf : <anonymous>: no visible global function definition for
     'model.matrix'
    Undefined global functions or variables:
     abline acf as.formula coefficients dnorm extractAIC legend lines lm
     loess.smooth model.frame model.matrix na.pass optim pacf par points
     polygon qnorm qqline rnorm runif sd smooth.spline spline str var vcov
     weighted.mean
    Consider adding
     importFrom("graphics", "abline", "legend", "lines", "par", "points",
     "polygon")
     importFrom("stats", "acf", "as.formula", "coefficients", "dnorm",
     "extractAIC", "lm", "loess.smooth", "model.frame",
     "model.matrix", "na.pass", "optim", "pacf", "qnorm",
     "qqline", "rnorm", "runif", "sd", "smooth.spline", "spline",
     "var", "vcov", "weighted.mean")
     importFrom("utils", "str")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.7
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: Matrix
    Replacing existing trend.
    Replacing existing trend.
    Replacing existing trend.
    Replacing existing trend.
    Smooth interpolated at 279 time(s).
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'ST_tutorial.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hyphenat.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.11 \usepackage
     [unicode,linktocpage=true,bookmarksnumbered=true]{hyperref}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64