CRAN Package Check Results for Package TNRS

Last updated on 2021-09-16 20:51:47 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 2.79 37.24 40.03 OK
r-devel-linux-x86_64-debian-gcc 0.1.0 2.14 29.12 31.26 OK
r-devel-linux-x86_64-fedora-clang 0.1.0 55.13 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.0 44.05 NOTE
r-devel-windows-x86_64 0.1.0 6.00 65.00 71.00 ERROR
r-devel-windows-x86_64-gcc10-UCRT 0.1.0 NOTE
r-patched-linux-x86_64 0.1.0 2.78 35.85 38.63 OK
r-patched-solaris-x86 0.1.0 68.80 NOTE
r-release-linux-x86_64 0.1.0 2.75 35.88 38.63 OK
r-release-macos-arm64 0.1.0 NOTE
r-release-macos-x86_64 0.1.0 NOTE
r-release-windows-ix86+x86_64 0.1.0 7.00 56.00 63.00 ERROR
r-oldrel-macos-x86_64 0.1.0 NOTE
r-oldrel-windows-ix86+x86_64 0.1.0 4.00 55.00 59.00 ERROR

Check Details

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘rjson’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 4 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in 'TNRS-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: TNRS
    > ### Title: Resolve plant taxonomic names
    > ### Aliases: TNRS
    >
    > ### ** Examples
    >
    > {
    + #Take a subset of the testfile to speed up runtime
    + tnrs_testfile <- tnrs_testfile[1:20,]
    +
    + results <- TNRS(taxonomic_names = tnrs_testfile)
    +
    + # Inspect the results
    + head(results, 10)
    + }
    Error in function (type, msg, asError = TRUE) :
     error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
    Calls: TNRS ... .TNRS_base -> postForm -> .postForm -> <Anonymous> -> fun
    Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [7s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(TNRS)
     >
     >
     > test_check("TNRS")
     == Failed tests ================================================================
     -- Error (test-TNRS.R:7:3): example works --------------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = tnrs_testfile) test-TNRS.R:7:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:19:3): character vector returns results ------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(...) test-TNRS.R:19:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:28:3): character returns results -------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = c("Epidendrum boyleii")) test-TNRS.R:28:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:40:3): all sources work ----------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = species, sources = "tpl") test-TNRS.R:40:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:64:3): matches all returns more rows than best -----------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidendon boyleii", matches = "all") test-TNRS.R:64:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:74:3): parsing returns matches ---------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidentrum boyleii", mode = "parse") test-TNRS.R:74:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_base.R:7:3): example works ---------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS:::.TNRS_base(taxonomic_names = tnrs_testfile) test-TNRS_base.R:7:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_citations.R:6:3): example works ----------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_citations() test-TNRS_citations.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_metadata.R:6:3): example works -----------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_metadata() test-TNRS_metadata.R:6:2
     2. | \-TNRS::TNRS_citations()
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_sources.R:6:3): example works ------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_sources() test-TNRS_sources.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_version.R:6:3): example works ------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_version() test-TNRS_version.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
    
     [ FAIL 11 | WARN 0 | SKIP 0 | PASS 1 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'TNRS_vignette.Rmd' using rmarkdown
    Quitting from lines 30-50 (TNRS_vignette.Rmd)
    Error: processing vignette 'TNRS_vignette.Rmd' failed with diagnostics:
    error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
    --- failed re-building 'TNRS_vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'TNRS_vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [6s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(TNRS)
     >
     >
     > test_check("TNRS")
     == Failed tests ================================================================
     -- Error (test-TNRS.R:7:3): example works --------------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = tnrs_testfile) test-TNRS.R:7:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:19:3): character vector returns results ------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(...) test-TNRS.R:19:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:28:3): character returns results -------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = c("Epidendrum boyleii")) test-TNRS.R:28:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:40:3): all sources work ----------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = species, sources = "tpl") test-TNRS.R:40:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:64:3): matches all returns more rows than best -----------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidendon boyleii", matches = "all") test-TNRS.R:64:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:74:3): parsing returns matches ---------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidentrum boyleii", mode = "parse") test-TNRS.R:74:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_base.R:7:3): example works ---------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS:::.TNRS_base(taxonomic_names = tnrs_testfile) test-TNRS_base.R:7:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_citations.R:6:3): example works ----------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_citations() test-TNRS_citations.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_metadata.R:6:3): example works -----------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_metadata() test-TNRS_metadata.R:6:2
     2. | \-TNRS::TNRS_citations()
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_sources.R:6:3): example works ------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_sources() test-TNRS_sources.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_version.R:6:3): example works ------------------------------
     Error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_version() test-TNRS_version.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
    
     [ FAIL 11 | WARN 0 | SKIP 0 | PASS 1 ]
     Error: Test failures
     Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64