CRAN Package Check Results for Package TransPhylo

Last updated on 2024-06-14 02:54:21 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.5 31.80 132.64 164.44 NOTE
r-devel-linux-x86_64-debian-gcc 1.4.5 26.03 63.91 89.94 ERROR
r-devel-linux-x86_64-fedora-clang 1.4.5 223.88 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4.5 227.34 NOTE
r-devel-windows-x86_64 1.4.5 29.00 142.00 171.00 NOTE
r-patched-linux-x86_64 1.4.5 33.53 132.17 165.70 NOTE
r-release-linux-x86_64 1.4.5 30.56 131.75 162.31 NOTE
r-release-macos-arm64 1.4.5 70.00 NOTE
r-release-macos-x86_64 1.4.5 104.00 NOTE
r-release-windows-x86_64 1.4.5 29.00 150.00 179.00 NOTE
r-oldrel-macos-arm64 1.4.5 90.00 NOTE
r-oldrel-macos-x86_64 1.4.5 149.00 NOTE
r-oldrel-windows-x86_64 1.4.5 36.00 170.00 206.00 NOTE

Check Details

Version: 1.4.5
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.4.5
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'testthat', 'purrr' Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.4.5
Check: tests
Result: ERROR Running ‘testthat.R’ [0s/1s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) Error in library(testthat) : there is no package called 'testthat' Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.4.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘TransPhylo.Rmd’ using rmarkdown --- finished re-building ‘TransPhylo.Rmd’ --- re-building ‘infer.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-3-1.png 576x384 pixels, 8 bits/pixel, 240 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3159 bytes Input file size = 3969 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2574 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2574 Output IDAT size = 2574 bytes (585 bytes decrease) Output file size = 2652 bytes (1317 bytes = 33.18% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-4-1.png 576x384 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4335 bytes Input file size = 5184 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3687 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3677 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3677 Output IDAT size = 3677 bytes (658 bytes decrease) Output file size = 3755 bytes (1429 bytes = 27.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-8-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17250 bytes Input file size = 18132 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16136 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16136 Output IDAT size = 16136 bytes (1114 bytes decrease) Output file size = 16214 bytes (1918 bytes = 10.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-10-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11603 bytes Input file size = 11693 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9381 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9381 Output IDAT size = 9381 bytes (2222 bytes decrease) Output file size = 9459 bytes (2234 bytes = 19.11% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-11-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14639 bytes Input file size = 14729 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13095 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13095 Output IDAT size = 13095 bytes (1544 bytes decrease) Output file size = 13173 bytes (1556 bytes = 10.56% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-12-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8477 bytes Input file size = 8567 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7591 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7591 Output IDAT size = 7591 bytes (886 bytes decrease) Output file size = 7669 bytes (898 bytes = 10.48% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-13-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 6970 bytes Input file size = 7048 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6653 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 6218 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 6218 Output IDAT size = 6218 bytes (752 bytes decrease) Output file size = 6296 bytes (752 bytes = 10.67% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-14-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12651 bytes Input file size = 12741 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10863 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10863 Output IDAT size = 10863 bytes (1788 bytes decrease) Output file size = 10941 bytes (1800 bytes = 14.13% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-15-1.png 576x384 pixels, 8 bits/pixel, 238 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3809 bytes Input file size = 4613 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3147 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3147 Output IDAT size = 3147 bytes (662 bytes decrease) Output file size = 3225 bytes (1388 bytes = 30.09% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-16-1.png 576x384 pixels, 8 bits/pixel, 241 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3723 bytes Input file size = 4536 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3023 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3023 Output IDAT size = 3023 bytes (700 bytes decrease) Output file size = 3101 bytes (1435 bytes = 31.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-17-1.png 576x384 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6096 bytes Input file size = 6936 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5510 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5510 Output IDAT size = 5510 bytes (586 bytes decrease) Output file size = 5588 bytes (1348 bytes = 19.43% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/infer_files/figure-html/unnamed-chunk-18-1.png 576x384 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4292 bytes Input file size = 5132 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3677 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3677 Output IDAT size = 3677 bytes (615 bytes decrease) Output file size = 3755 bytes (1377 bytes = 26.83% decrease) --- finished re-building ‘infer.Rmd’ --- re-building ‘multitree.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/multitree_files/figure-html/unnamed-chunk-2-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16498 bytes Input file size = 16600 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13635 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13635 Output IDAT size = 13635 bytes (2863 bytes decrease) Output file size = 13713 bytes (2887 bytes = 17.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/multitree_files/figure-html/unnamed-chunk-2-2.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12785 bytes Input file size = 12875 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10348 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10348 Output IDAT size = 10348 bytes (2437 bytes decrease) Output file size = 10426 bytes (2449 bytes = 19.02% decrease) Quitting from lines 57-68 [unnamed-chunk-3] (multitree.Rmd) Error: processing vignette 'multitree.Rmd' failed with diagnostics: there is no package called 'purrr' --- failed re-building ‘multitree.Rmd’ --- re-building ‘simulate.rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/simulate_files/figure-html/unnamed-chunk-5-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11736 bytes Input file size = 11826 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9419 Output IDAT size = 9419 bytes (2317 bytes decrease) Output file size = 9497 bytes (2329 bytes = 19.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/simulate_files/figure-html/unnamed-chunk-6-1.png 576x384 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6490 bytes Input file size = 7345 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5789 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5789 Output IDAT size = 5789 bytes (701 bytes decrease) Output file size = 5867 bytes (1478 bytes = 20.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/simulate_files/figure-html/unnamed-chunk-7-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14978 bytes Input file size = 15068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13551 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13551 Output IDAT size = 13551 bytes (1427 bytes decrease) Output file size = 13629 bytes (1439 bytes = 9.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/simulate_files/figure-html/unnamed-chunk-8-1.png 576x384 pixels, 8 bits/pixel, 252 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4336 bytes Input file size = 5182 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3685 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3681 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3681 Output IDAT size = 3681 bytes (655 bytes decrease) Output file size = 3759 bytes (1423 bytes = 27.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TransPhylo.Rcheck/vign_test/TransPhylo/vignettes/simulate_files/figure-html/unnamed-chunk-9-1.png 576x384 pixels, 8 bits/pixel, 252 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4336 bytes Input file size = 5182 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3685 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3681 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3681 Output IDAT size = 3681 bytes (655 bytes decrease) Output file size = 3759 bytes (1423 bytes = 27.46% decrease) --- finished re-building ‘simulate.rmd’ SUMMARY: processing the following file failed: ‘multitree.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc