CRAN Package Check Results for Package cRegulome

Last updated on 2019-05-20 06:47:31 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.0 5.57 291.23 296.80 OK
r-devel-linux-x86_64-debian-gcc 0.3.0 4.91 184.57 189.48 OK
r-devel-linux-x86_64-fedora-clang 0.3.0 305.11 OK
r-devel-linux-x86_64-fedora-gcc 0.3.0 290.07 OK
r-devel-windows-ix86+x86_64 0.3.0 35.00 400.00 435.00 OK
r-patched-linux-x86_64 0.3.0 6.48 263.85 270.33 OK
r-patched-solaris-x86 0.3.0 400.10 OK
r-release-linux-x86_64 0.3.0 5.71 263.59 269.30 OK
r-release-windows-ix86+x86_64 0.3.0 33.00 402.00 435.00 OK
r-release-osx-x86_64 0.3.0 WARN
r-oldrel-windows-ix86+x86_64 0.3.0 9.00 293.00 302.00 OK
r-oldrel-osx-x86_64 0.3.0 WARN

Check Details

Version: 0.3.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'AnnotationDbi', 'org.Hs.eg.db', 'clusterProfiler'
Flavor: r-release-osx-x86_64

Version: 0.3.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘case_study.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: R.oo
    Loading required package: R.methodsS3
    R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
    R.oo v1.22.0 (2018-04-21) successfully loaded. See ?R.oo for help.
    
    Attaching package: 'R.oo'
    
    The following objects are masked from 'package:methods':
    
     getClasses, getMethods
    
    The following objects are masked from 'package:base':
    
     attach, detach, gc, load, save
    
    R.utils v2.8.0 successfully loaded. See ?R.utils for help.
    
    Attaching package: 'R.utils'
    
    The following object is masked from 'package:utils':
    
     timestamp
    
    The following objects are masked from 'package:base':
    
     cat, commandArgs, getOption, inherits, isOpen, nullfile,
     parse, warnings
    
    
    Attaching package: 'igraph'
    
    The following object is masked from 'package:R.oo':
    
     hierarchy
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Quitting from lines 32-41 (case_study.Rmd)
    Error: processing vignette 'case_study.Rmd' failed with diagnostics:
    there is no package called 'AnnotationDbi'
    --- failed re-building ‘case_study.Rmd’
    
    --- re-building ‘using_cRegulome.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Picking joint bandwidth of 0.0445
    --- finished re-building ‘using_cRegulome.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘case_study.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘clusterProfiler’
Flavor: r-oldrel-osx-x86_64

Version: 0.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: IRanges
    Loading required package: S4Vectors
    
    Attaching package: 'S4Vectors'
    
    The following object is masked from 'package:base':
    
     expand.grid
    
    
    Attaching package: 'IRanges'
    
    The following object is masked from 'package:R.oo':
    
     trim
    
    
    Quitting from lines 32-41 (case_study.Rmd)
    Error: processing vignette 'case_study.Rmd' failed with diagnostics:
    there is no package called 'clusterProfiler'
    Execution halted
Flavor: r-oldrel-osx-x86_64