CRAN Package Check Results for Package data.table

Last updated on 2018-01-19 05:49:47 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.10.4-3 22.05 244.36 266.41 ERROR
r-devel-linux-x86_64-debian-gcc 1.10.4-3 24.23 191.28 215.51 ERROR
r-devel-linux-x86_64-fedora-clang 1.10.4-3 329.16 NOTE
r-devel-linux-x86_64-fedora-gcc 1.10.4-3 310.52 NOTE
r-devel-windows-ix86+x86_64 1.10.4-3 110.00 392.00 502.00 ERROR
r-patched-linux-x86_64 1.10.4-3 29.38 248.64 278.02 ERROR
r-patched-solaris-x86 1.10.4-3 476.60 OK
r-release-linux-x86_64 1.10.4-3 26.24 253.17 279.41 ERROR
r-release-windows-ix86+x86_64 1.10.4-3 79.00 401.00 480.00 OK
r-release-osx-x86_64 1.10.4-3 NOTE
r-oldrel-windows-ix86+x86_64 1.10.4-3 95.00 365.00 460.00 OK
r-oldrel-osx-x86_64 1.10.4-3 OK

Additional issues

rchk valgrind

Check Details

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/0s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [158s/146s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Wed Jan 17 19:16:31 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/2s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [123s/176s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Thu Jan 18 18:00:57 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.10.4-3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘GenomicRanges’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64

Version: 1.10.4-3
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [0s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [137s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/main.R' failed.
    Last 13 lines of output:
     Test 1652.052 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.06 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.078 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.086 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     66 errors out of 5744 (lastID=1751, endian==little, sizeof(long double)==12, sizeof(pointer)==4) in inst/tests/tests.Rraw on Wed Jan 17 07:32:00 2018. Search tests.Rraw for test numbers: 1641.003, 1641.005, 1641.006, 1642.004, 1642.007, 1642.035, 1642.037, 1642.04, 1642.042, 1642.043, 1642.057, 1642.059, 1642.07, 1642.073, 1642.074, 1642.075, 1642.078, 1642.087, 1642.088, 1643.013, 1644.027, 1644.03, 1644.039, 1644.042, 1644.043, 1644.053, 1644.057, 1644.07, 1644.073, 1644.081, 1644.082, 1644.085, 1644.087, 1645.008, 1646.017, 1646.022, 1646.032, 1646.033, 1646.036, 1646.037, 1646.062, 1646.078, 1646.082, 1647.011, 1648.029, 1648.03, 1648.032, 1648.052, 1648.062, 1648.073, 1648.08, 1648.089, 1650.01, 1650.024, 1650.034, 1650.048, 1650.06, 1652.012, 1652.027, 1652.043, 1652.045, 1652.051, 1652.052, 1652.06, 1652.078, 1652.086.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/2s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [161s/203s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, cbind, colMeans, colSums, colnames, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
     pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
     setdiff, sort, table, tapply, union, unique, unsplit, which,
     which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Thu Jan 18 07:11:39 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/2s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [166s/211s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, cbind, colMeans, colSums, colnames, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
     pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
     setdiff, sort, table, tapply, union, unique, unsplit, which,
     which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Thu Jan 18 19:11:46 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-release-linux-x86_64