CRAN Package Check Results for Package dexter

Last updated on 2019-09-18 07:52:34 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.0 81.87 147.81 229.68 OK
r-devel-linux-x86_64-debian-gcc 1.0.0 68.95 102.77 171.72 OK
r-devel-linux-x86_64-fedora-clang 1.0.0 296.60 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.0 278.97 OK
r-devel-windows-ix86+x86_64 1.0.0 229.00 241.00 470.00 NOTE
r-patched-linux-x86_64 1.0.0 75.47 127.06 202.53 OK
r-patched-solaris-x86 1.0.0 318.80 ERROR
r-release-linux-x86_64 1.0.0 76.69 129.35 206.04 OK
r-release-windows-ix86+x86_64 1.0.0 173.00 185.00 358.00 NOTE
r-release-osx-x86_64 1.0.0 WARN
r-oldrel-windows-ix86+x86_64 1.0.0 175.00 163.00 338.00 NOTE
r-oldrel-osx-x86_64 1.0.0 WARN

Check Details

Version: 1.0.0
Check: installed package size
Result: NOTE
     installed size is 8.4Mb
     sub-directories of 1Mb or more:
     doc 1.1Mb
     libs 6.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [15s/15s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > library(dexter)
     >
     > test_check("dexter")
     ==========
     ==========
     =======Error in solve.default(H * scale, sufI - EsufI) :
     system is computationally singular: reciprocal condition number = 7.26986e-18
     =Error in solve.default(H * scale, sufI - EsufI) :
     Lapack routine dgesv: system is exactly singular: U[3,3] = 0
     ── 1. Error: inconsistencies between data and parms are handled correctly (@test
     problem cannot be computed
     1: fit_enorm(db, !(item_id == "S4DoShout" & item_score == 1)) at testthat/test_ability.R:14
     2: fit_enorm_(dataSrc, qtpredicate = qtpredicate, fixed_params = fixed_params, method = method,
     nIterations = nIterations, env = env, merge_within_persons = merge_within_persons)
     3: calibrate_CML(scoretab = scoretab, design = design, sufI = ssIS$sufI, a = ssIS$item_score,
     first = ssI$first, last = ssI$last, nIter = nIterations, fixed_b = fixed_b)
     4: stop("problem cannot be computed")
    
     ==========
     2000 responses imported.
     2000 responses imported.
    
     rules_changed: 1
     rules_added: 0
     ==========
     ==========
     [1] "S1DoCurse" "S1DoScold" "S1DoShout" "S1WantCurse" "S1WantScold"
     [6] "S1WantShout" "S2DoCurse" "S2DoScold" "S2DoShout" "S2WantCurse"
     [11] "S2WantScold" "S2WantShout" "S3DoCurse" "S3DoScold" "S3DoShout"
     [16] "S3WantCurse" "S3WantScold" "S3WantShout" "S4DoCurse" "S4DoScold"
     [21] "S4DoShout" "S4WantCurse" "S4WantScold" "S4WantShout"
     =======Error in solve.default(H * scale, sufI - EsufI) :
     Lapack routine dgesv: system is exactly singular: U[4,4] = 0
     In addition: Warning message:
     call dbDisconnect() when finished working with a connection
     Error in solve.default(H * scale, sufI - EsufI) :
     Lapack routine dgesv: system is exactly singular: U[4,4] = 0
     ── 2. Failure: calibration of verbal aggression dataset matches oplm results, wi
     `object` threw an error.
     Message: problem cannot be computed
     Class: simpleError/error/condition
    
     =======Error in solve.default(H * scale, sufI - EsufI) :
     system is computationally singular: reciprocal condition number = 5.86363e-18
     Error in solve.default(H * scale, sufI - EsufI) :
     system is computationally singular: reciprocal condition number = 7.18456e-20
     ── 3. Error: populations work (@test_plausible_values.R#9) ────────────────────
     problem cannot be computed
     1: fit_enorm(db, (grepl("dxP\\d\\d$", person_id, perl = TRUE) & item_position <= 16) |
     (!grepl("dxP\\d\\d$", person_id, perl = TRUE) & item_position > 8)) at testthat/test_plausible_values.R:9
     2: fit_enorm_(dataSrc, qtpredicate = qtpredicate, fixed_params = fixed_params, method = method,
     nIterations = nIterations, env = env, merge_within_persons = merge_within_persons)
     3: calibrate_CML(scoretab = scoretab, design = design, sufI = ssIS$sufI, a = ssIS$item_score,
     first = ssI$first, last = ssI$last, nIter = nIterations, fixed_b = fixed_b)
     4: stop("problem cannot be computed")
    
     ==========
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 137 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: inconsistencies between data and parms are handled correctly (@test_ability.R#14)
     2. Failure: calibration of verbal aggression dataset matches oplm results, with fixed and unfixed (@test_enorm.R#85)
     3. Error: populations work (@test_plausible_values.R#9)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘DIF_vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    no column `person_id` provided, automatically generating unique person id's
    --- finished re-building ‘DIF_vignette.Rmd’
    
    --- re-building ‘Equating.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    no column `person_id` provided, automatically generating unique person id's
    no column `person_id` provided, automatically generating unique person id's
    no column `person_id` provided, automatically generating unique person id's
    --- finished re-building ‘Equating.Rmd’
    
    --- re-building ‘Plausible_Values.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 132-135 (Plausible_Values.Rmd)
    Error: processing vignette 'Plausible_Values.Rmd' failed with diagnostics:
    replacement has 10 rows, data has 11
    --- failed re-building ‘Plausible_Values.Rmd’
    
    --- re-building ‘Test_Individual_differences.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    no column `person_id` provided, automatically generating unique person id's
    --- finished re-building ‘Test_Individual_differences.Rmd’
    
    --- re-building ‘dexter.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘dexter.Rmd’
    
    --- re-building ‘profile-plots.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    no column `person_id` provided, automatically generating unique person id's
    --- finished re-building ‘profile-plots.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Plausible_Values.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    no column `person_id` provided, automatically generating unique person id's
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    no column `person_id` provided, automatically generating unique person id's
    no column `person_id` provided, automatically generating unique person id's
    no column `person_id` provided, automatically generating unique person id's
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 94-101 (Plausible_Values.Rmd)
    Error: processing vignette 'Plausible_Values.Rmd' failed with diagnostics:
    replacement has 20 rows, data has 21
    Execution halted
Flavor: r-oldrel-osx-x86_64