CRAN Package Check Results for Maintainer ‘Dirk Eddelbuettel <edd at debian.org>’

Last updated on 2019-08-18 07:49:16 CEST.

Package ERROR WARN NOTE OK
anytime 12
AsioHeaders 12
BH 7 5
binb 12
dang 12
digest 1 11
drat 12
gaussfacts 12
gcbd 3 6
gettz 2 10
gunsales 2 10
inline 12
linl 12
littler 6
nanotime 12
pinp 2 10
pkgKitten 12
prrd 12
random 12
RApiDatetime 12
RApiSerialize 12
Rblpapi 11
Rcpp 2 6 4
RcppAnnoy 6 6
RcppAPT 9
RcppArmadillo 2 6 4
RcppBDT 4 8
RcppCCTZ 12
RcppClassic 3 2 7
RcppClassicExamples 12
RcppCNPy 3 9
RcppDE 12
RcppEigen 7 5
RcppExamples 2 10
RcppGetconf 9
RcppGSL 2 10
RcppMsgPack 7 5
RcppNLoptExample 12
RcppQuantuccia 1 11
RcppRedis 11
RcppSMC 10 2
RcppStreams 2 10
RcppTOML 12
RcppXts 12
RcppZiggurat 2 10
RDieHarder 4 7
rfoaas 12
RInside 1 11
rmsfact 12
RProtoBuf 2 5 4
RPushbullet 12
RQuantLib 5 4
RVowpalWabbit 2 6
sanitizers 2 10
tint 12
x13binary 11 1

Package anytime

Current CRAN status: OK: 12

Package AsioHeaders

Current CRAN status: OK: 12

Package BH

Current CRAN status: NOTE: 7, OK: 5

Version: 1.69.0-1
Check: installed package size
Result: NOTE
     installed size is 153.5Mb
     sub-directories of 1Mb or more:
     include 153.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package binb

Current CRAN status: OK: 12

Package dang

Current CRAN status: OK: 12

Package digest

Current CRAN status: ERROR: 1, OK: 11

Version: 0.6.20
Check: tests
Result: ERROR
     Running ‘tinytest.R’
    Running the tests in ‘tests/tinytest.R’ failed.
    Complete output:
     >
     > if (requireNamespace("tinytest", quietly=TRUE)) {
     +
     + ## Set a seed to make the test deterministic
     + set.seed(42)
     +
     + ## there are several more granular ways to test files in a
     + ## tinytest directory, see its package vignette; tests can also
     + ## run once the package is installed using the same command
     +
     + ## we need version 0.9.3 or later
     + if (packageVersion("tinytest") >= "0.9.3") {
     + tinytest::test_package("digest")
     + }
     + }
     Loading required package: digest
    
     Running test_aes.R.................... 0 tests
     Running test_aes.R.................... 0 tests
     Running test_aes.R.................... 0 tests
     Running test_aes.R.................... 0 tests
     Running test_aes.R.................... 0 tests
     Running test_aes.R.................... 0 tests
     Running test_aes.R.................... 0 tests
     Running test_aes.R.................... 1 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 2 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 2 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 2 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 2 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 2 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 3 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 4 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 4 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 4 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 4 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 4 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 5 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 6 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 6 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 6 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 6 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 6 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 6 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 7 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 8 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 8 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 8 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 8 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 8 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 9 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 9 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 10 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 10 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 10 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 10 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 10 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 11 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 11 tests <1b>[0;32mOK<1b>[0m
     Running test_aes.R.................... 12 tests <1b>[0;32mOK<1b>[0m
    
     Running test_crc32.R.................. 0 tests
     Running test_crc32.R.................. 0 tests
     Running test_crc32.R.................. 0 tests
     Running test_crc32.R.................. 0 tests
     Running test_crc32.R.................. 0 tests
     Running test_crc32.R.................. 1 tests <1b>[0;32mOK<1b>[0m
     Running test_crc32.R.................. 1 tests <1b>[0;32mOK<1b>[0m
     Running test_crc32.R.................. 2 tests <1b>[0;32mOK<1b>[0m
    
     Running test_digest.R................. 0 tests
     Running test_digest.R................. 0 tests
     Running test_digest.R................. 0 tests
     Running test_digest.R................. 7 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 14 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 14 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 14 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 16 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 18 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 18 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 18 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 20 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 22 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 22 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 22 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 24 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 24 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 25 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 25 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 25 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 28 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 28 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 28 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 31 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 31 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 31 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 34 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 35 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 35 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 35 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 42 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 42 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 42 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 45 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 45 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 46 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 46 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 46 tests <1b>[0;32mOK<1b>[0m
     Running test_digest.R................. 46 tests <1b>[0;32mOK<1b>[0m
     *** caught segfault ***
     address 0x4000000048, cause 'memory not mapped'
    
     Traceback:
     1: digest(fname, length = 18000, algo = alg, serialize = FALSE, file = TRUE)
     2: eval(expr, envir = e)
     3: eval(expr, envir = e)
     4: run_test_file(file, at_home = at_home, verbose = verbose, color = color, remove_side_effects = remove_side_effects)
     5: run_test_dir("./", at_home = at_home, ...)
     6: tinytest::test_package("digest")
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang

Package drat

Current CRAN status: OK: 12

Package gaussfacts

Current CRAN status: OK: 12

Package gcbd

Current CRAN status: WARN: 3, NOTE: 6

Version: 0.2.6
Flags: --no-examples --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'gputools'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gputools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘gcbd.Rnw’ using Sweave
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    --- failed re-building ‘gcbd.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘gcbd.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gcbd.Rnw’ using Sweave
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    --- failed re-building ‘gcbd.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘gcbd.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gcbd.Rnw’ using Sweave
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    --- failed re-building ‘gcbd.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘gcbd.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package gettz

Current CRAN status: NOTE: 2, OK: 10

Version: 0.0.3
Check: compiled code
Result: NOTE
    File ‘gettz/libs/gettz.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package gunsales

Current CRAN status: WARN: 2, OK: 10

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘gunsales.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    sh: line 1: 13995 Trace/BPT trap: 5 /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.6/x13binary/bin/x13ashtml /tmp/RtmpZhJtlI/x1336a159a99349/iofile -n -s 2> /dev/null
    dyld: lazy symbol binding failed: Symbol not found: _mkostemp
     Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.6/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: _mkostemp
     Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.6/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
     Expected in: /usr/lib/libSystem.B.dylib
    
    
    Program received signal SIGTRAP: Trace/breakpoint trap.
    
    Backtrace for this error:
    #0 0x1251da579
    #1 0x1251d9945
    #2 0x7fff9ae44529
    Quitting from lines 33-34 (gunsales.Rmd)
    Error: processing vignette 'gunsales.Rmd' failed with diagnostics:
    X-13 has returned a non-zero exist status, which means that the current spec file cannot be processed for an unknown reason.
    --- failed re-building ‘gunsales.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘gunsales.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    sh: line 1: 29372 Trace/BPT trap: 5 /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/x13ashtml /var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T//RtmpjUDYzi/x13717e8f67458/iofile -n -s 2> /dev/null
    dyld: lazy symbol binding failed: Symbol not found: _mkostemp
     Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: _mkostemp
     Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
     Expected in: /usr/lib/libSystem.B.dylib
    
    
    Program received signal SIGTRAP: Trace/breakpoint trap.
    
    Backtrace for this error:
    #0 0x121f26579
    #1 0x121f25945
    #2 0x7fff93ac4529
    Quitting from lines 33-34 (gunsales.Rmd)
    Error: processing vignette 'gunsales.Rmd' failed with diagnostics:
    X-13 has returned a non-zero exist status, which means that the current spec file cannot be processed for an unknown reason.
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package inline

Current CRAN status: OK: 12

Package linl

Current CRAN status: OK: 12

Package littler

Current CRAN status: OK: 6

Package nanotime

Current CRAN status: OK: 12

Package pinp

Current CRAN status: WARN: 2, OK: 10

Version: 0.0.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘pinp.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'pinp.Rmd' failed with diagnostics:
    Failed to compile pinp.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See pinp.log for more info.
    --- failed re-building ‘pinp.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘pinp.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package pkgKitten

Current CRAN status: OK: 12

Package prrd

Current CRAN status: OK: 12

Package random

Current CRAN status: OK: 12

Package RApiDatetime

Current CRAN status: OK: 12

Package RApiSerialize

Current CRAN status: OK: 12

Package Rblpapi

Current CRAN status: NOTE: 11

Version: 0.3.10
Check: whether package can be installed
Result: NOTE
    Found the following notes/warnings:
     Non-staged installation was used
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64

Version: 0.3.10
Check: installed package size
Result: NOTE
     installed size is 15.5Mb
     sub-directories of 1Mb or more:
     blp 7.1Mb
     libs 7.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package Rcpp

Current CRAN status: WARN: 2, NOTE: 6, OK: 4

Additional issues

gcc-UBSAN

Version: 1.0.2
Check: installed package size
Result: NOTE
     installed size is 15.9Mb
     sub-directories of 1Mb or more:
     doc 2.7Mb
     include 6.4Mb
     libs 4.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.2
Check: foreign function calls
Result: NOTE
    Registration problem:
     symbol ‘symbol’ in the local frame:
     .Call(symbol)
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Rcpp-FAQ.Rmd’ using rmarkdown
    Building shared library for Rcpp code chunk...
    Building shared library for Rcpp code chunk...
    Building shared library for Rcpp code chunk...
    Building shared library for Rcpp code chunk...
    Building shared library for Rcpp code chunk...
    Building shared library for Rcpp code chunk...
    Building shared library for Rcpp code chunk...
    Building shared library for Rcpp code chunk...
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-FAQ.Rmd' failed with diagnostics:
    Failed to compile Rcpp-FAQ.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-FAQ.log for more info.
    --- failed re-building ‘Rcpp-FAQ.Rmd’
    
    --- re-building ‘Rcpp-attributes.Rmd’ using rmarkdown
    Warning in get_engine(options$engine) :
     Unknown language engine 'cpp' (must be registered via knit_engines$set()).
    Warning in get_engine(options$engine) :
     Unknown language engine 'cpp' (must be registered via knit_engines$set()).
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-attributes.Rmd' failed with diagnostics:
    Failed to compile Rcpp-attributes.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-attributes.log for more info.
    --- failed re-building ‘Rcpp-attributes.Rmd’
    
    --- re-building ‘Rcpp-extending.Rmd’ using rmarkdown
    Building shared library for Rcpp code chunk...
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-extending.Rmd' failed with diagnostics:
    Failed to compile Rcpp-extending.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-extending.log for more info.
    --- failed re-building ‘Rcpp-extending.Rmd’
    
    --- re-building ‘Rcpp-introduction.Rmd’ using rmarkdown
    Building shared library for Rcpp code chunk...
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-introduction.Rmd' failed with diagnostics:
    Failed to compile Rcpp-introduction.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-introduction.log for more info.
    --- failed re-building ‘Rcpp-introduction.Rmd’
    
    --- re-building ‘Rcpp-modules.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-modules.Rmd' failed with diagnostics:
    Failed to compile Rcpp-modules.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-modules.log for more info.
    --- failed re-building ‘Rcpp-modules.Rmd’
    
    --- re-building ‘Rcpp-package.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-package.Rmd' failed with diagnostics:
    Failed to compile Rcpp-package.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-package.log for more info.
    --- failed re-building ‘Rcpp-package.Rmd’
    
    --- re-building ‘Rcpp-quickref.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-quickref.Rmd' failed with diagnostics:
    Failed to compile Rcpp-quickref.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-quickref.log for more info.
    --- failed re-building ‘Rcpp-quickref.Rmd’
    
    --- re-building ‘Rcpp-sugar.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'Rcpp-sugar.Rmd' failed with diagnostics:
    Failed to compile Rcpp-sugar.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See Rcpp-sugar.log for more info.
    --- failed re-building ‘Rcpp-sugar.Rmd’
    
    --- re-building ‘Rcpp-jss-2011.Rnw’ using Sweave
    --- finished re-building ‘Rcpp-jss-2011.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘Rcpp-FAQ.Rmd’ ‘Rcpp-attributes.Rmd’ ‘Rcpp-extending.Rmd’
     ‘Rcpp-introduction.Rmd’ ‘Rcpp-modules.Rmd’ ‘Rcpp-package.Rmd’
     ‘Rcpp-quickref.Rmd’ ‘Rcpp-sugar.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package RcppAnnoy

Current CRAN status: NOTE: 6, OK: 6

Additional issues

clang-UBSAN gcc-UBSAN

Version: 0.0.12
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'annoy.tree'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.12
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     libs 4.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppAPT

Current CRAN status: OK: 9

Package RcppArmadillo

Current CRAN status: WARN: 2, NOTE: 6, OK: 4

Version: 0.9.600.4.0
Check: installed package size
Result: NOTE
     installed size is 8.4Mb
     sub-directories of 1Mb or more:
     include 5.8Mb
     libs 1.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.9.600.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RcppArmadillo-sparseMatrix.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RcppArmadillo-sparseMatrix.Rmd' failed with diagnostics:
    Failed to compile RcppArmadillo-sparseMatrix.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RcppArmadillo-sparseMatrix.log for more info.
    --- failed re-building ‘RcppArmadillo-sparseMatrix.Rmd’
    
    --- re-building ‘RcppArmadillo-intro.Rnw’ using Sweave
    --- finished re-building ‘RcppArmadillo-intro.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘RcppArmadillo-sparseMatrix.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package RcppBDT

Current CRAN status: NOTE: 4, OK: 8

Version: 0.2.3
Check: installed package size
Result: NOTE
     installed size is 8.6Mb
     sub-directories of 1Mb or more:
     libs 8.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.3
Check: compiled code
Result: NOTE
    File ‘RcppBDT/libs/RcppBDT.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package RcppCCTZ

Current CRAN status: OK: 12

Package RcppClassic

Current CRAN status: WARN: 3, NOTE: 2, OK: 7

Version: 0.9.11
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'RcppClassic-unitTests.html' 'RcppClassic-unitTests.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9.11
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RcppClassic-intro.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RcppClassic-intro.Rmd' failed with diagnostics:
    Failed to compile RcppClassic-intro.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RcppClassic-intro.log for more info.
    --- failed re-building ‘RcppClassic-intro.Rmd’
    
    --- re-building ‘RcppClassic-unitTests.Rnw’ using Sweave
    Loading required package: RcppClassic
    --- finished re-building ‘RcppClassic-unitTests.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘RcppClassic-intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9.11
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     WARNING: shared objects/dynamic libraries with hard-coded temporary installation paths
Flavor: r-release-osx-x86_64

Version: 0.9.11
Check: installed package size
Result: NOTE
     installed size is 5.0Mb
     sub-directories of 1Mb or more:
     lib 3.1Mb
     libs 1.5Mb
Flavor: r-release-osx-x86_64

Package RcppClassicExamples

Current CRAN status: OK: 12

Package RcppCNPy

Current CRAN status: WARN: 3, OK: 9

Version: 0.2.10
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RcppCNPy-intro.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RcppCNPy-intro.Rmd' failed with diagnostics:
    Failed to compile RcppCNPy-intro.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RcppCNPy-intro.log for more info.
    --- failed re-building ‘RcppCNPy-intro.Rmd’
    
    --- re-building ‘UsingReticulate.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'UsingReticulate.Rmd' failed with diagnostics:
    Failed to compile UsingReticulate.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See UsingReticulate.log for more info.
    --- failed re-building ‘UsingReticulate.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘RcppCNPy-intro.Rmd’ ‘UsingReticulate.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.10
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘RcppCNPy-intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 95-104 (RcppCNPy-intro.Rmd)
    Error: processing vignette 'RcppCNPy-intro.Rmd' failed with diagnostics:
    Python shared library not found, Python bindings not loaded.
    --- failed re-building ‘RcppCNPy-intro.Rmd’
    
    --- re-building ‘UsingReticulate.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 84-94 (UsingReticulate.Rmd)
    Error: processing vignette 'UsingReticulate.Rmd' failed with diagnostics:
    Python shared library not found, Python bindings not loaded.
    --- failed re-building ‘UsingReticulate.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘RcppCNPy-intro.Rmd’ ‘UsingReticulate.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Package RcppDE

Current CRAN status: OK: 12

Additional issues

clang-UBSAN

Package RcppEigen

Current CRAN status: NOTE: 7, OK: 5

Version: 0.3.3.5.0
Check: installed package size
Result: NOTE
     installed size is 32.2Mb
     sub-directories of 1Mb or more:
     include 7.9Mb
     libs 23.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RcppExamples

Current CRAN status: NOTE: 2, OK: 10

Version: 0.1.8
Check: compiled code
Result: NOTE
    File ‘RcppExamples/libs/RcppExamples.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package RcppGetconf

Current CRAN status: OK: 9

Package RcppGSL

Current CRAN status: WARN: 2, OK: 10

Version: 0.3.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RcppGSL-intro.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RcppGSL-intro.Rmd' failed with diagnostics:
    Failed to compile RcppGSL-intro.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RcppGSL-intro.log for more info.
    --- failed re-building ‘RcppGSL-intro.Rmd’
    
    --- re-building ‘RcppGSL-unitTests.Rnw’ using Sweave
    Loading required package: RcppGSL
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package RcppMsgPack

Current CRAN status: NOTE: 7, OK: 5

Version: 0.2.3
Check: installed package size
Result: NOTE
     installed size is 10.0Mb
     sub-directories of 1Mb or more:
     include 7.0Mb
     libs 2.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RcppNLoptExample

Current CRAN status: OK: 12

Package RcppQuantuccia

Current CRAN status: WARN: 1, NOTE: 11

Version: 0.0.2
Check: pragmas in C/C++ headers and code
Result: NOTE
    Files which contain pragma(s) suppressing diagnostics:
     'inst/include/ql/math/distributions/normaldistribution.hpp'
     'inst/include/ql/math/matrix.hpp'
     'inst/include/ql/math/optimization/levenbergmarquardt.hpp'
     'inst/include/ql/math/statistics/incrementalstatistics.hpp'
     'inst/include/ql/time/date.hpp' 'inst/include/ql/time/imm.hpp'
     'inst/include/ql/utilities/dataparsers.hpp'
     'inst/include/ql/utilities/null.hpp'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     ../inst/include/ql/math/array.hpp:314:29: warning: 'bind2nd<std::__1::plus<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:329:29: warning: 'bind2nd<std::__1::minus<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:344:29: warning: 'bind2nd<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:359:29: warning: 'bind2nd<std::__1::divides<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:511:29: warning: 'bind2nd<std::__1::plus<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:518:29: warning: 'bind1st<std::__1::plus<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:536:29: warning: 'bind2nd<std::__1::minus<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:543:29: warning: 'bind1st<std::__1::minus<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:561:29: warning: 'bind2nd<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:568:29: warning: 'bind1st<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:586:29: warning: 'bind2nd<std::__1::divides<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:593:29: warning: 'bind1st<std::__1::divides<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:602:29: warning: 'ptr_fun<double, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:609:29: warning: 'ptr_fun<double, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:616:29: warning: 'ptr_fun<double, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:623:29: warning: 'ptr_fun<double, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:630:31: warning: 'ptr_fun<double, double, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/array.hpp:630:18: warning: 'bind2nd<std::__1::pointer_to_binary_function<double, double, double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/matrix.hpp:306:29: warning: 'bind2nd<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/matrix.hpp:312:29: warning: 'bind2nd<std::__1::divides<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/matrix.hpp:544:29: warning: 'bind2nd<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/matrix.hpp:551:29: warning: 'bind2nd<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/matrix.hpp:558:29: warning: 'bind2nd<std::__1::divides<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/timegrid.hpp:63:34: warning: 'ptr_fun<double, double, bool>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/timegrid.hpp:93:34: warning: 'ptr_fun<double, double, bool>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/generallinearleastsquares.hpp:150:18: warning: 'bind1st<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
     ../inst/include/ql/math/matrix.hpp:636:33: warning: 'bind1st<std::__1::multiplies<double>, double>' is deprecated [-Wdeprecated-declarations]
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.0.2
Check: installed package size
Result: NOTE
     installed size is 16.7Mb
     sub-directories of 1Mb or more:
     include 8.9Mb
     libs 7.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RcppRedis

Current CRAN status: OK: 11

Package RcppSMC

Current CRAN status: NOTE: 10, OK: 2

Version: 0.2.1
Check: line endings in C/C++/Fortran sources/headers
Result: NOTE
    Found the following sources/headers not terminated with a newline:
     inst/include/pflineart.h
    Some compilers warn on such files.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64

Version: 0.2.1
Check: installed package size
Result: NOTE
     installed size is 6.5Mb
     sub-directories of 1Mb or more:
     libs 6.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64

Package RcppStreams

Current CRAN status: NOTE: 2, OK: 10

Version: 0.1.3
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     libs 4.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64

Package RcppTOML

Current CRAN status: OK: 12

Package RcppXts

Current CRAN status: NOTE: 12

Version: 0.0.4
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: 'methods'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.0.4
Check: compiled code
Result: NOTE
    File ‘RcppXts/libs/RcppXts.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package RcppZiggurat

Current CRAN status: WARN: 2, OK: 10

Additional issues

LTO

Version: 0.1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RcppZiggurat.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RcppZiggurat.Rmd' failed with diagnostics:
    Failed to compile RcppZiggurat.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RcppZiggurat.log for more info.
    --- failed re-building ‘RcppZiggurat.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘RcppZiggurat.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package RDieHarder

Current CRAN status: WARN: 4, OK: 7

Additional issues

valgrind

Version: 0.2.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     bits.c:1247:23: warning: array subscript 8 is outside array bounds of ‘unsigned int[1]’ [-Warray-bounds]
     bits.c:1265:18: warning: array subscript 9 is outside array bounds of ‘unsigned int[1]’ [-Warray-bounds]
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     skein_block64.c:226:39: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Package rfoaas

Current CRAN status: OK: 12

Package RInside

Current CRAN status: WARN: 1, NOTE: 11

Version: 0.2.15
Check: compiled code
Result: NOTE
    File 'RInside/libs/RInside.so':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/RInside.so':
     Found non-API calls to R: 'R_CStackLimit', 'R_CleanTempDir',
     'R_DefParams', 'R_ReplDLLdo1', 'R_ReplDLLinit',
     'R_RunExitFinalizers', 'R_SetParams', 'R_SignalHandlers',
     'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.2.15
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    File ‘RInside/libs/RInside.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.15
Check: installed package size
Result: NOTE
     installed size is 8.8Mb
     sub-directories of 1Mb or more:
     lib 3.5Mb
     libs 4.8Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.15
Check: compiled code
Result: NOTE
    File 'RInside/libs/i386/RInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/x64/RInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/i386/libRInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/x64/libRInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/i386/RInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/x64/RInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/i386/libRInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/x64/libRInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.15
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     WARNING: shared objects/dynamic libraries with hard-coded temporary installation paths
Flavor: r-release-osx-x86_64

Version: 0.2.15
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package rmsfact

Current CRAN status: OK: 12

Package RProtoBuf

Current CRAN status: WARN: 2, NOTE: 5, OK: 4

Version: 0.4.14
Check: installed package size
Result: NOTE
     installed size is 10.7Mb
     sub-directories of 1Mb or more:
     doc 1.1Mb
     libs 8.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.4.14
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RProtoBuf-intro.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RProtoBuf-intro.Rmd' failed with diagnostics:
    Failed to compile RProtoBuf-intro.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RProtoBuf-intro.log for more info.
    --- failed re-building ‘RProtoBuf-intro.Rmd’
    
    --- re-building ‘RProtoBuf-quickref.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RProtoBuf-quickref.Rmd' failed with diagnostics:
    Failed to compile RProtoBuf-quickref.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RProtoBuf-quickref.log for more info.
    --- failed re-building ‘RProtoBuf-quickref.Rmd’
    
    --- re-building ‘RProtoBuf-paper.Rnw’ using Sweave
    Warning in as.integer(2^31 - 1) + as.integer(1) :
     NAs produced by integer overflow
    --- finished re-building 'RProtoBuf-paper.Rnw'
    
    --- re-building ‘RProtoBuf-unitTests.Rnw’ using Sweave
    Loading required package: RProtoBuf
    Error in readASCII(tutorial.AddressBook, file(out.file, "rt")) :
     summary(input)[["text"]] == "binary" is not TRUE
    [libprotobuf ERROR google/protobuf/text_format.cc:324] Error parsing text-format tutorial.AddressBook: 2:1: Message type "tutorial.AddressBook" has no field named "jibberish".
    Error in readASCII(tutorial.AddressBook, file(out.file2)) :
     Could not parse ASCII protocol buffer.
    [libprotobuf ERROR google/protobuf/text_format.cc:324] Error parsing text-format tutorial.AddressBook: 1:1: Expected identifier, got: /
    Error in readASCII(tutorial.AddressBook, out.file2) :
     Could not parse ASCII protocol buffer from text string. Consider setting partial=TRUE
    [libprotobuf ERROR google/protobuf/text_format.cc:328] Error parsing text-format tutorial.Person: Message missing required fields: id
    Error in readASCII(x, input, ...) :
     Could not parse ASCII protocol buffer.
    Error in `$<-`(`*tmp*`, optional_bool, value = NA) :
     NA boolean values can not be stored in bool protocol buffer fields
    Error in `$<-`(`*tmp*`, optional_bool, value = "100") :
     Not compatible with requested type: [type=character; target=logical].
    Error in `$<-`(`*tmp*`, optional_bool, value = "invalid") :
     Not compatible with requested type: [type=character; target=logical].
    Error in `$<-`(`*tmp*`, repeated_bool, value = c("invalid", "invalid")) :
     Cannot convert to bool
    Error in `$<-`(`*tmp*`, repeated_bool, value = "33-") :
     Cannot convert to bool
    Error in `$<-`(`*tmp*`, repeated_bool, value = c(TRUE, FALSE, TRUE, NA :
     NA boolean values can not be stored in bool protocol buffer fields
    Error in as.list(x)[[i]] : subscript out of bounds
    Error in .local(x, i, j, ...) : Unknown field
    Error in getExtension(x, field, ...) :
     getExtension requires a FieldDescriptor
    Error in setExtension(x, field, values, ...) :
     setExtension requires a FieldDescriptor
    Error in getExtension(x, field, ...) :
     Field my_extension_string does not match message type ( protobuf_unittest.TestFieldOrderings != protobuf_unittest.TestAllExtensions )
    Error in `$<-`(`*tmp*`, optional_int32, value = 1:10) :
     cannot set non-repeated field to vector of length > 1
    Error in is(values, "Message") :
     argument "values" is missing, with no default
    [libprotobuf WARNING google/protobuf/compiler/parser.cc:647] No syntax specified for the proto file: /data/gannet/ripley/R/packages/tests-clang/RProtoBuf.Rcheck/RProtoBuf/DESCRIPTION. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
    Error in readProtoFiles(system.file("DESCRIPTION", package = "RProtoBuf")) :
     Could not load proto file '/data/gannet/ripley/R/packages/tests-clang/RProtoBuf.Rcheck/RProtoBuf/DESCRIPTION'
    
    Error in `$<-`(`*tmp*`, repeated_int32, value = c("invalid", "invalid" :
     Provided character value 'invalid' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, repeated_int32, value = "33-") :
     Provided character value '33-' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, optional_int32, value = "invalid") :
     Provided character value 'invalid' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, optional_uint32, value = "invalid") :
     Provided character value 'invalid' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, repeated_int64, value = c("invalid", "invalid" :
     Provided character value 'invalid' cannot be cast to 64-bit integer.
    Error in `$<-`(`*tmp*`, optional_int64, value = "invalid") :
     Provided character value 'invalid' cannot be cast to 64-bit integer.
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 0 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 1 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 1 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 1 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Warning: closing unused connection 11 (/tmp/Rtmpah33da/file33b6565d1dc)
    Warning: closing unused connection 10 (/tmp/Rtmpah33da/file33b6565d1dc)
    Warning: closing unused connection 9 (/tmp/Rtmpah33da/file33b31579c27)
    Warning: closing unused connection 8 (/tmp/Rtmpah33da/file33b31579c27)
    Warning: closing unused connection 7 (/tmp/Rtmpah33da/file33b113f97e7)
    Warning: closing unused connection 6 (/tmp/Rtmpah33da/file33b113f97e7)
    Warning: closing unused connection 5 (/tmp/Rtmpah33da/file33b113f97e7)
    Error in .local(object, connection, ascii, refhook) :
     object$isInitialized() is not TRUE
    Error in .local(object, connection, ascii, refhook) :
     object$isInitialized() is not TRUE
    --- finished re-building ‘RProtoBuf-unitTests.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘RProtoBuf-intro.Rmd’ ‘RProtoBuf-quickref.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.4.14
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RProtoBuf-intro.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RProtoBuf-intro.Rmd' failed with diagnostics:
    Failed to compile RProtoBuf-intro.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RProtoBuf-intro.log for more info.
    --- failed re-building ‘RProtoBuf-intro.Rmd’
    
    --- re-building ‘RProtoBuf-quickref.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'RProtoBuf-quickref.Rmd' failed with diagnostics:
    Failed to compile RProtoBuf-quickref.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See RProtoBuf-quickref.log for more info.
    --- failed re-building ‘RProtoBuf-quickref.Rmd’
    
    --- re-building ‘RProtoBuf-paper.Rnw’ using Sweave
    Warning in as.integer(2^31 - 1) + as.integer(1) :
     NAs produced by integer overflow
    --- finished re-building 'RProtoBuf-paper.Rnw'
    
    --- re-building ‘RProtoBuf-unitTests.Rnw’ using Sweave
    Loading required package: RProtoBuf
    Error in readASCII(tutorial.AddressBook, file(out.file, "rt")) :
     summary(input)[["text"]] == "binary" is not TRUE
    [libprotobuf ERROR google/protobuf/text_format.cc:307] Error parsing text-format tutorial.AddressBook: 2:1: Message type "tutorial.AddressBook" has no field named "jibberish".
    Error in readASCII(tutorial.AddressBook, file(out.file2)) :
     Could not parse ASCII protocol buffer.
    [libprotobuf ERROR google/protobuf/text_format.cc:307] Error parsing text-format tutorial.AddressBook: 1:1: Expected identifier, got: /
    Error in readASCII(tutorial.AddressBook, out.file2) :
     Could not parse ASCII protocol buffer from text string. Consider setting partial=TRUE
    [libprotobuf ERROR google/protobuf/text_format.cc:312] Error parsing text-format tutorial.Person: Message missing required fields: id
    Error in readASCII(x, input, ...) :
     Could not parse ASCII protocol buffer.
    Error in `$<-`(`*tmp*`, optional_bool, value = NA) :
     NA boolean values can not be stored in bool protocol buffer fields
    Error in `$<-`(`*tmp*`, optional_bool, value = "100") :
     Not compatible with requested type: [type=character; target=logical].
    Error in `$<-`(`*tmp*`, optional_bool, value = "invalid") :
     Not compatible with requested type: [type=character; target=logical].
    Error in `$<-`(`*tmp*`, repeated_bool, value = c("invalid", "invalid")) :
     Cannot convert to bool
    Error in `$<-`(`*tmp*`, repeated_bool, value = "33-") :
     Cannot convert to bool
    Error in `$<-`(`*tmp*`, repeated_bool, value = c(TRUE, FALSE, TRUE, NA :
     NA boolean values can not be stored in bool protocol buffer fields
    Error in as.list(x)[[i]] : subscript out of bounds
    Error in .local(x, i, j, ...) : Unknown field
    Error in getExtension(x, field, ...) :
     getExtension requires a FieldDescriptor
    Error in setExtension(x, field, values, ...) :
     setExtension requires a FieldDescriptor
    Error in getExtension(x, field, ...) :
     Field my_extension_string does not match message type ( protobuf_unittest.TestFieldOrderings != protobuf_unittest.TestAllExtensions )
    Error in `$<-`(`*tmp*`, optional_int32, value = 1:10) :
     cannot set non-repeated field to vector of length > 1
    Error in is(values, "Message") :
     argument "values" is missing, with no default
    [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: /data/gannet/ripley/R/packages/tests-devel/RProtoBuf.Rcheck/RProtoBuf/DESCRIPTION. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
    Error in readProtoFiles(system.file("DESCRIPTION", package = "RProtoBuf")) :
     Could not load proto file '/data/gannet/ripley/R/packages/tests-devel/RProtoBuf.Rcheck/RProtoBuf/DESCRIPTION'
    
    Error in `$<-`(`*tmp*`, repeated_int32, value = c("invalid", "invalid" :
     Provided character value 'invalid' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, repeated_int32, value = "33-") :
     Provided character value '33-' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, optional_int32, value = "invalid") :
     Provided character value 'invalid' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, optional_uint32, value = "invalid") :
     Provided character value 'invalid' cannot be cast to 32-bit integer.
    Error in `$<-`(`*tmp*`, repeated_int64, value = c("invalid", "invalid" :
     Provided character value 'invalid' cannot be cast to 64-bit integer.
    Error in `$<-`(`*tmp*`, optional_int64, value = "invalid") :
     Provided character value 'invalid' cannot be cast to 64-bit integer.
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 0 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 1 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 1 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Error in `$<-`(`*tmp*`, repeated_nested_message, value = list(new("Message", :
     List element 1 is not a message of the appropriate type ('protobuf_unittest.TestAllTypes.NestedMessage')
    Warning: closing unused connection 11 (/tmp/RtmpwYDTOK/file166e6cf2a734)
    Warning: closing unused connection 10 (/tmp/RtmpwYDTOK/file166e6cf2a734)
    Warning: closing unused connection 9 (/tmp/RtmpwYDTOK/file166e79bbc433)
    Warning: closing unused connection 8 (/tmp/RtmpwYDTOK/file166e79bbc433)
    Warning: closing unused connection 7 (/tmp/RtmpwYDTOK/file166e6f83152f)
    Warning: closing unused connection 6 (/tmp/RtmpwYDTOK/file166e6f83152f)
    Warning: closing unused connection 5 (/tmp/RtmpwYDTOK/file166e6f83152f)
    Error in .local(object, connection, ascii, refhook) :
     object$isInitialized() is not TRUE
    Error in .local(object, connection, ascii, refhook) :
     object$isInitialized() is not TRUE
    --- finished re-building ‘RProtoBuf-unitTests.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘RProtoBuf-intro.Rmd’ ‘RProtoBuf-quickref.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Package RPushbullet

Current CRAN status: OK: 12

Package RQuantLib

Current CRAN status: NOTE: 5, OK: 4

Version: 0.4.10
Check: installed package size
Result: NOTE
     installed size is 27.6Mb
     sub-directories of 1Mb or more:
     libs 27.1Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.4.10
Check: dependencies in R code
Result: NOTE
    No protocol specified
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RVowpalWabbit

Current CRAN status: ERROR: 2, NOTE: 6

Additional issues

clang-UBSAN gcc-UBSAN

Version: 0.0.13
Check: whether package can be installed
Result: NOTE
    Found the following notes/warnings:
     Non-staged installation was used
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0.13
Check: top-level files
Result: NOTE
    Found a 'configure.in' file: 'configure.ac' has long been preferred.
     Output from running autoreconf:
     aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
     configure.in:22: warning: underquoted definition of AC_PROG_R
     configure.in:22: run info Automake 'Extending aclocal'
     configure.in:22: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal
     configure.in:86: warning: the serial number must appear before any macro definition
     configure.in:362: warning: the serial number must appear before any macro definition
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0.13
Check: installed package size
Result: NOTE
     installed size is 24.3Mb
     sub-directories of 1Mb or more:
     libs 4.6Mb
     test 19.6Mb
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.0.13
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package sanitizers

Current CRAN status: NOTE: 2, OK: 10

Version: 0.1.0
Check: compiled code
Result: NOTE
    File ‘sanitizers/libs/sanitizers.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package tint

Current CRAN status: OK: 12

Package x13binary

Current CRAN status: NOTE: 11, OK: 1

Version: 1.1.39-2
Check: whether package can be installed
Result: NOTE
    Found the following notes/warnings:
     Non-staged installation was used
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64

Version: 1.1.39-2
Check: installed package size
Result: NOTE
     installed size is 5.6Mb
     sub-directories of 1Mb or more:
     bin 5.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64