CRAN Package Check Results for Maintainer ‘Dirk Eddelbuettel <edd at debian.org>’

Last updated on 2018-06-21 19:47:53 CEST.

Package anytime

Current CRAN status: ERROR: 1, OK: 11

Additional issues

gcc-UBSAN

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘allFormats.R’
     Running ‘bulkTest.R’
     Running ‘gh_issue_12.R’
     Running ‘gh_issue_33.R’
     Running ‘gh_issue_5.R’
     Running ‘gh_issue_56.R’
     Running ‘gh_issues_36_51.R’
     Running ‘r_anytime.R’
     Running ‘simpleTests.R’
     Running ‘utilities.R’
     Running ‘validate.R’
    Running the tests in ‘tests/allFormats.R’ failed.
    Complete output:
     > options(digits.secs=6, width=70)
     >
     > library(anytime)
     >
     > ref <- format(as.POSIXct(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"),
     + "%Y-%m-%d %H:%M:%0S"))
     Warning messages:
     1: In strptime(xx, f, tz = tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
     2: In as.POSIXct.POSIXlt(x) : unknown timezone '%Y-%m-%d %H:%M:%0S'
     3: In strptime(x, f, tz = tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
     4: In as.POSIXct.POSIXlt(as.POSIXlt(x, tz, ...), tz, ...) :
     unknown timezone '%Y-%m-%d %H:%M:%0S'
     5: In as.POSIXlt.POSIXct(x, tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
     >
     >
     > stopifnot(ref == format(anytime(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"))))
     Error: ref == format(anytime(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"))) are not all TRUE
     Execution halted
    Running the tests in ‘tests/bulkTest.R’ failed.
    Complete output:
     >
     > ## we still have weird issues with some timezones so some testing needed
     > ## and while Boost Date_Time instantiates the formats relative to a locale
     > ## it remains tricky to change TZ on the fly
     >
     > library(anytime)
     >
     > verbose <- FALSE
     >
     > tzvec <- c( # courtesy of CCTZ
     + "Africa/Abidjan",
     + "Africa/Accra",
     + "Africa/Addis_Ababa",
     + "Africa/Algiers",
     + "Africa/Asmara",
     + "Africa/Asmera",
     + "Africa/Bamako",
     + "Africa/Bangui",
     + "Africa/Banjul",
     + "Africa/Bissau",
     + "Africa/Blantyre",
     + "Africa/Brazzaville",
     + "Africa/Bujumbura",
     + "Africa/Cairo",
     + "Africa/Casablanca",
     + "Africa/Ceuta",
     + "Africa/Conakry",
     + "Africa/Dakar",
     + "Africa/Dar_es_Salaam",
     + "Africa/Djibouti",
     + "Africa/Douala",
     + "Africa/El_Aaiun",
     + "Africa/Freetown",
     + "Africa/Gaborone",
     + "Africa/Harare",
     + "Africa/Johannesburg",
     + "Africa/Juba",
     + "Africa/Kampala",
     + "Africa/Khartoum",
     + "Africa/Kigali",
     + "Africa/Kinshasa",
     + "Africa/Lagos",
     + "Africa/Libreville",
     + "Africa/Lome",
     + "Africa/Luanda",
     + "Africa/Lubumbashi",
     + "Africa/Lusaka",
     + "Africa/Malabo",
     + "Africa/Maputo",
     + "Africa/Maseru",
     + "Africa/Mbabane",
     + "Africa/Mogadishu",
     + "Africa/Monrovia",
     + "Africa/Nairobi",
     + "Africa/Ndjamena",
     + "Africa/Niamey",
     + "Africa/Nouakchott",
     + "Africa/Ouagadougou",
     + "Africa/Porto-Novo",
     + "Africa/Sao_Tome",
     + "Africa/Timbuktu",
     + "Africa/Tripoli",
     + "Africa/Tunis",
     + "Africa/Windhoek",
     + "America/Adak",
     + "America/Anchorage",
     + "America/Anguilla",
     + "America/Antigua",
     + "America/Araguaina",
     + "America/Argentina/Buenos_Aires",
     + "America/Argentina/Catamarca",
     + "America/Argentina/ComodRivadavia",
     + "America/Argentina/Cordoba",
     + "America/Argentina/Jujuy",
     + "America/Argentina/La_Rioja",
     + "America/Argentina/Mendoza",
     + "America/Argentina/Rio_Gallegos",
     + "America/Argentina/Salta",
     + "America/Argentina/San_Juan",
     + "America/Argentina/San_Luis",
     + "America/Argentina/Tucuman",
     + "America/Argentina/Ushuaia",
     + "America/Aruba",
     + "America/Asuncion",
     + "America/Atikokan",
     + "America/Atka",
     + "America/Bahia",
     + "America/Bahia_Banderas",
     + "America/Barbados",
     + "America/Belem",
     + "America/Belize",
     + "America/Blanc-Sablon",
     + "America/Boa_Vista",
     + "America/Bogota",
     + "America/Boise",
     + "America/Buenos_Aires",
     + "America/Cambridge_Bay",
     + "America/Campo_Grande",
     + "America/Cancun",
     + "America/Caracas",
     + "America/Catamarca",
     + "America/Cayenne",
     + "America/Cayman",
     + "America/Chicago",
     + "America/Chihuahua",
     + "America/Coral_Harbour",
     + "America/Cordoba",
     + "America/Costa_Rica",
     + "America/Creston",
     + "America/Cuiaba",
     + "America/Curacao",
     + "America/Danmarkshavn",
     + "America/Dawson",
     + "America/Dawson_Creek",
     + "America/Denver",
     + "America/Detroit",
     + "America/Dominica",
     + "America/Edmonton",
     + "America/Eirunepe",
     + "America/El_Salvador",
     + "America/Ensenada",
     + "America/Fort_Wayne",
     + "America/Fortaleza",
     + "America/Glace_Bay",
     + "America/Godthab",
     + "America/Goose_Bay",
     + "America/Grand_Turk",
     + "America/Grenada",
     + "America/Guadeloupe",
     + "America/Guatemala",
     + "America/Guayaquil",
     + "America/Guyana",
     + "America/Halifax",
     + "America/Havana",
     + "America/Hermosillo",
     + "America/Indiana/Indianapolis",
     + "America/Indiana/Knox",
     + "America/Indiana/Marengo",
     + "America/Indiana/Petersburg",
     + "America/Indiana/Tell_City",
     + "America/Indiana/Vevay",
     + "America/Indiana/Vincennes",
     + "America/Indiana/Winamac",
     + "America/Indianapolis",
     + "America/Inuvik",
     + "America/Iqaluit",
     + "America/Jamaica",
     + "America/Jujuy",
     + "America/Juneau",
     + "America/Kentucky/Louisville",
     + "America/Kentucky/Monticello",
     + "America/Knox_IN",
     + "America/Kralendijk",
     + "America/La_Paz",
     + "America/Lima",
     + "America/Los_Angeles",
     + "America/Louisville",
     + "America/Lower_Princes",
     + "America/Maceio",
     + "America/Managua",
     + "America/Manaus",
     + "America/Marigot",
     + "America/Martinique",
     + "America/Matamoros",
     + "America/Mazatlan",
     + "America/Mendoza",
     + "America/Menominee",
     + "America/Merida",
     + "America/Metlakatla",
     + "America/Mexico_City",
     + "America/Miquelon",
     + "America/Moncton",
     + "America/Monterrey",
     + "America/Montevideo",
     + "America/Montreal",
     + "America/Montserrat",
     + "America/Nassau",
     + "America/New_York",
     + "America/Nipigon",
     + "America/Nome",
     + "America/Noronha",
     + "America/North_Dakota/Beulah",
     + "America/North_Dakota/Center",
     + "America/North_Dakota/New_Salem",
     + "America/Ojinaga",
     + "America/Panama",
     + "America/Pangnirtung",
     + "America/Paramaribo",
     + "America/Phoenix",
     + "America/Port-au-Prince",
     + "America/Port_of_Spain",
     + "America/Porto_Acre",
     + "America/Porto_Velho",
     + "America/Puerto_Rico",
     + "America/Rainy_River",
     + "America/Rankin_Inlet",
     + "America/Recife",
     + "America/Regina",
     + "America/Resolute",
     + "America/Rio_Branco",
     + "America/Rosario",
     + "America/Santa_Isabel",
     + "America/Santarem",
     + "America/Santiago",
     + "America/Santo_Domingo",
     + "America/Sao_Paulo",
     + "America/Scoresbysund",
     + "America/Shiprock",
     + "America/Sitka",
     + "America/St_Barthelemy",
     + "America/St_Johns",
     + "America/St_Kitts",
     + "America/St_Lucia",
     + "America/St_Thomas",
     + "America/St_Vincent",
     + "America/Swift_Current",
     + "America/Tegucigalpa",
     + "America/Thule",
     + "America/Thunder_Bay",
     + "America/Tijuana",
     + "America/Toronto",
     + "America/Tortola",
     + "America/Vancouver",
     + "America/Virgin",
     + "America/Whitehorse",
     + "America/Winnipeg",
     + "America/Yakutat",
     + "America/Yellowknife",
     + "Antarctica/Casey",
     + "Antarctica/Davis",
     + "Antarctica/DumontDUrville",
     + "Antarctica/Macquarie",
     + "Antarctica/Mawson",
     + "Antarctica/McMurdo",
     + "Antarctica/Palmer",
     + "Antarctica/Rothera",
     + "Antarctica/South_Pole",
     + "Antarctica/Syowa",
     + "Antarctica/Troll",
     + "Antarctica/Vostok",
     + "Arctic/Longyearbyen",
     + "Asia/Aden",
     + "Asia/Almaty",
     + "Asia/Amman",
     + "Asia/Anadyr",
     + "Asia/Aqtau",
     + "Asia/Aqtobe",
     + "Asia/Ashgabat",
     + "Asia/Ashkhabad",
     + "Asia/Baghdad",
     + "Asia/Bahrain",
     + "Asia/Baku",
     + "Asia/Bangkok",
     + "Asia/Beirut",
     + "Asia/Bishkek",
     + "Asia/Brunei",
     + "Asia/Calcutta",
     + "Asia/Chita",
     + "Asia/Choibalsan",
     + "Asia/Chongqing",
     + "Asia/Chungking",
     + "Asia/Colombo",
     + "Asia/Dacca",
     + "Asia/Damascus",
     + "Asia/Dhaka",
     + "Asia/Dili",
     + "Asia/Dubai",
     + "Asia/Dushanbe",
     + "Asia/Gaza",
     + "Asia/Harbin",
     + "Asia/Hebron",
     + "Asia/Ho_Chi_Minh",
     + "Asia/Hong_Kong",
     + "Asia/Hovd",
     + "Asia/Irkutsk",
     + "Asia/Istanbul",
     + "Asia/Jakarta",
     + "Asia/Jayapura",
     + "Asia/Jerusalem",
     + "Asia/Kabul",
     + "Asia/Kamchatka",
     + "Asia/Karachi",
     + "Asia/Kashgar",
     + "Asia/Kathmandu",
     + "Asia/Katmandu",
     + "Asia/Khandyga",
     + "Asia/Kolkata",
     + "Asia/Krasnoyarsk",
     + "Asia/Kuala_Lumpur",
     + "Asia/Kuching",
     + "Asia/Kuwait",
     + "Asia/Macao",
     + "Asia/Macau",
     + "Asia/Magadan",
     + "Asia/Makassar",
     + "Asia/Manila",
     + "Asia/Muscat",
     + "Asia/Nicosia",
     + "Asia/Novokuznetsk",
     + "Asia/Novosibirsk",
     + "Asia/Omsk",
     + "Asia/Oral",
     + "Asia/Phnom_Penh",
     + "Asia/Pontianak",
     + "Asia/Pyongyang",
     + "Asia/Qatar",
     + "Asia/Qyzylorda",
     + "Asia/Rangoon",
     + "Asia/Riyadh",
     + "Asia/Saigon",
     + "Asia/Sakhalin",
     + "Asia/Samarkand",
     + "Asia/Seoul",
     + "Asia/Shanghai",
     + "Asia/Singapore",
     + "Asia/Srednekolymsk",
     + "Asia/Taipei",
     + "Asia/Tashkent",
     + "Asia/Tbilisi",
     + "Asia/Tehran",
     + "Asia/Tel_Aviv",
     + "Asia/Thimbu",
     + "Asia/Thimphu",
     + "Asia/Tokyo",
     + "Asia/Ujung_Pandang",
     + "Asia/Ulaanbaatar",
     + "Asia/Ulan_Bator",
     + "Asia/Urumqi",
     + "Asia/Ust-Nera",
     + "Asia/Vientiane",
     + "Asia/Vladivostok",
     + "Asia/Yakutsk",
     + "Asia/Yekaterinburg",
     + "Asia/Yerevan",
     + "Atlantic/Azores",
     + "Atlantic/Bermuda",
     + "Atlantic/Canary",
     + "Atlantic/Cape_Verde",
     + "Atlantic/Faeroe",
     + "Atlantic/Faroe",
     + "Atlantic/Jan_Mayen",
     + "Atlantic/Madeira",
     + "Atlantic/Reykjavik",
     + "Atlantic/South_Georgia",
     + "Atlantic/St_Helena",
     + "Atlantic/Stanley",
     + "Australia/ACT",
     + "Australia/Adelaide",
     + "Australia/Brisbane",
     + "Australia/Broken_Hill",
     + "Australia/Canberra",
     + "Australia/Currie",
     + "Australia/Darwin",
     + "Australia/Eucla",
     + "Australia/Hobart",
     + "Australia/LHI",
     + "Australia/Lindeman",
     + "Australia/Lord_Howe",
     + "Australia/Melbourne",
     + "Australia/NSW",
     + "Australia/North",
     + "Australia/Perth",
     + "Australia/Queensland",
     + "Australia/South",
     + "Australia/Sydney",
     + "Australia/Tasmania",
     + "Australia/Victoria",
     + "Australia/West",
     + "Australia/Yancowinna",
     + "Brazil/Acre",
     + "Brazil/DeNoronha",
     + "Brazil/East",
     + "Brazil/West",
     + "CET",
     + "CST6CDT",
     + "Canada/Atlantic",
     + "Canada/Central",
     + "Canada/East-Saskatchewan",
     + "Canada/Eastern",
     + "Canada/Mountain",
     + "Canada/Newfoundland",
     + "Canada/Pacific",
     + "Canada/Saskatchewan",
     + "Canada/Yukon",
     + "Chile/Continental",
     + "Chile/EasterIsland",
     + "Cuba",
     + "EET",
     + "EST",
     + "EST5EDT",
     + "Egypt",
     + "Eire",
     + "Etc/GMT",
     + "Etc/GMT+0",
     + "Etc/GMT+1",
     + "Etc/GMT+10",
     + "Etc/GMT+11",
     + "Etc/GMT+12",
     + "Etc/GMT+2",
     + "Etc/GMT+3",
     + "Etc/GMT+4",
     + "Etc/GMT+5",
     + "Etc/GMT+6",
     + "Etc/GMT+7",
     + "Etc/GMT+8",
     + "Etc/GMT+9",
     + "Etc/GMT-0",
     + "Etc/GMT-1",
     + "Etc/GMT-10",
     + "Etc/GMT-11",
     + "Etc/GMT-12",
     + "Etc/GMT-13",
     + "Etc/GMT-14",
     + "Etc/GMT-2",
     + "Etc/GMT-3",
     + "Etc/GMT-4",
     + "Etc/GMT-5",
     + "Etc/GMT-6",
     + "Etc/GMT-7",
     + "Etc/GMT-8",
     + "Etc/GMT-9",
     + "Etc/GMT0",
     + "Etc/Greenwich",
     + "Etc/UCT",
     + "Etc/UTC",
     + "Etc/Universal",
     + "Etc/Zulu",
     + "Europe/Amsterdam",
     + "Europe/Andorra",
     + "Europe/Athens",
     + "Europe/Belfast",
     + "Europe/Belgrade",
     + "Europe/Berlin",
     + "Europe/Bratislava",
     + "Europe/Brussels",
     + "Europe/Bucharest",
     + "Europe/Budapest",
     + "Europe/Busingen",
     + "Europe/Chisinau",
     + "Europe/Copenhagen",
     + "Europe/Dublin",
     + "Europe/Gibraltar",
     + "Europe/Guernsey",
     + "Europe/Helsinki",
     + "Europe/Isle_of_Man",
     + "Europe/Istanbul",
     + "Europe/Jersey",
     + "Europe/Kaliningrad",
     + "Europe/Kiev",
     + "Europe/Lisbon",
     + "Europe/Ljubljana",
     + "Europe/London",
     + "Europe/Luxembourg",
     + "Europe/Madrid",
     + "Europe/Malta",
     + "Europe/Mariehamn",
     + "Europe/Minsk",
     + "Europe/Monaco",
     + "Europe/Moscow",
     + "Europe/Nicosia",
     + "Europe/Oslo",
     + "Europe/Paris",
     + "Europe/Podgorica",
     + "Europe/Prague",
     + "Europe/Riga",
     + "Europe/Rome",
     + "Europe/Samara",
     + "Europe/San_Marino",
     + "Europe/Sarajevo",
     + "Europe/Simferopol",
     + "Europe/Skopje",
     + "Europe/Sofia",
     + "Europe/Stockholm",
     + "Europe/Tallinn",
     + "Europe/Tirane",
     + "Europe/Tiraspol",
     + "Europe/Uzhgorod",
     + "Europe/Vaduz",
     + "Europe/Vatican",
     + "Europe/Vienna",
     + "Europe/Vilnius",
     + "Europe/Volgograd",
     + "Europe/Warsaw",
     + "Europe/Zagreb",
     + "Europe/Zaporozhye",
     + "Europe/Zurich",
     + "GB",
     + "GB-Eire",
     + "GMT",
     + "GMT+0",
     + "GMT-0",
     + "GMT0",
     + "Greenwich",
     + "HST",
     + "Hongkong",
     + "Iceland",
     + "Indian/Antananarivo",
     + "Indian/Chagos",
     + "Indian/Christmas",
     + "Indian/Cocos",
     + "Indian/Comoro",
     + "Indian/Kerguelen",
     + "Indian/Mahe",
     + "Indian/Maldives",
     + "Indian/Mauritius",
     + "Indian/Mayotte",
     + "Indian/Reunion",
     + "Iran",
     + "Israel",
     + "Jamaica",
     + "Japan",
     + "Kwajalein",
     + "Libya",
     + "MET",
     + "MST",
     + "MST7MDT",
     + "Mexico/BajaNorte",
     + "Mexico/BajaSur",
     + "Mexico/General",
     + "NZ",
     + "NZ-CHAT",
     + "Navajo",
     + "PRC",
     + "PST8PDT",
     + "Pacific/Apia",
     + "Pacific/Auckland",
     + "Pacific/Bougainville",
     + "Pacific/Chatham",
     + "Pacific/Chuuk",
     + "Pacific/Easter",
     + "Pacific/Efate",
     + "Pacific/Enderbury",
     + "Pacific/Fakaofo",
     + "Pacific/Fiji",
     + "Pacific/Funafuti",
     + "Pacific/Galapagos",
     + "Pacific/Gambier",
     + "Pacific/Guadalcanal",
     + "Pacific/Guam",
     + "Pacific/Honolulu",
     + "Pacific/Johnston",
     + "Pacific/Kiritimati",
     + "Pacific/Kosrae",
     + "Pacific/Kwajalein",
     + "Pacific/Majuro",
     + "Pacific/Marquesas",
     + "Pacific/Midway",
     + "Pacific/Nauru",
     + "Pacific/Niue",
     + "Pacific/Norfolk",
     + "Pacific/Noumea",
     + "Pacific/Pago_Pago",
     + "Pacific/Palau",
     + "Pacific/Pitcairn",
     + "Pacific/Pohnpei",
     + "Pacific/Ponape",
     + "Pacific/Port_Moresby",
     + "Pacific/Rarotonga",
     + "Pacific/Saipan",
     + "Pacific/Samoa",
     + "Pacific/Tahiti",
     + "Pacific/Tarawa",
     + "Pacific/Tongatapu",
     + "Pacific/Truk",
     + "Pacific/Wake",
     + "Pacific/Wallis",
     + "Pacific/Yap",
     + "Poland",
     + "Portugal",
     + "ROC",
     + "ROK",
     + "Singapore",
     + "Turkey",
     + "UCT",
     + "US/Alaska",
     + "US/Aleutian",
     + "US/Arizona",
     + "US/Central",
     + "US/East-Indiana",
     + "US/Eastern",
     + "US/Hawaii",
     + "US/Indiana-Starke",
     + "US/Michigan",
     + "US/Mountain",
     + "US/Pacific",
     + "US/Pacific-New",
     + "US/Samoa",
     + "UTC",
     + "Universal",
     + "W-SU",
     + "WET",
     + "Zulu"
     + )
     >
     > fullPOSIXctEx <- function(tstr) {
     + for (tz in tzvec) {
     + ## for anytime, the returned POSIXct object has the 'target' timezone (default is local)
     + at <- format( anytime(tstr, tz=tz) )
     + ## for as.POSIXct, we give tz when we format
     + pt <- format(as.POSIXct(tstr ), tz=tz)
     + if (verbose) cat(at, " -- ", pt, " -- ", tz, "\n")
     + stopifnot(all.equal(at, pt))
     + }
     + }
     >
     > fullDateEx <- function(tstr) {
     + for (tz in tzvec) {
     + at <- format(anydate(tstr))
     + pt <- format(as.Date(tstr))
     + if (verbose) cat(at, " -- ", pt, " -- ", tz, "\n")
     + stopifnot(all.equal(at, pt))
     + }
     + }
     >
     > fullPOSIXctEx("2016-07-11 12:13:14") # test summer
     Error in fullPOSIXctEx("2016-07-11 12:13:14") : at and pt are not equal:
     1 string mismatch
     Calls: fullPOSIXctEx -> stopifnot
     Execution halted
    Running the tests in ‘tests/simpleTests.R’ failed.
    Complete output:
     >
     > options(digits.secs=6)
     >
     > library(anytime)
     >
     > refT <- as.POSIXct(as.POSIXlt(format(as.Date("2016-01-01")+0:2)))
     > refD <- as.Date("2016-01-01")+0:2
     >
     > ## Dates: Integer
     > stopifnot(refD == anydate(20160101L + 0:2))
     > stopifnot(refT == anytime(20160101L + 0:2, oldHeuristic=TRUE))
     Error: refT == anytime(20160101L + 0:2, oldHeuristic = TRUE) are not all TRUE
     Execution halted
Flavor: r-patched-solaris-x86

Package AsioHeaders

Current CRAN status: OK: 12

Package BH

Current CRAN status: NOTE: 7, OK: 5

Version: 1.66.0-1
Check: installed package size
Result: NOTE
     installed size is 144.8Mb
     sub-directories of 1Mb or more:
     include 144.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package digest

Current CRAN status: ERROR: 1, OK: 11

Additional issues

clang-UBSAN gcc-UBSAN

Version: 0.6.15
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AESTest.R' [0s]
     Comparing 'AESTest.Rout' to 'AESTest.Rout.save' ... OK
     Running 'digestTest.R' [1s]
     Comparing 'digestTest.Rout' to 'digestTest.Rout.save' ... OK
     Running 'hmacTest.R' [0s]
     Comparing 'hmacTest.Rout' to 'hmacTest.Rout.save' ... OK
     Running 'load-unload.R' [0s]
     Running 'num2hexTest.R' [0s]
     Running 'sha1Test.R' [1s]
    Running the tests in 'tests/sha1Test.R' failed.
    Complete output:
     >
     > ## tests for digest, taken from the examples in the manual page
     >
     > stopifnot(require(digest))
     Loading required package: digest
     >
     > # calculate sha1 fingerprints
     > x.numeric <- seq(0, 1, length = 4 ^ 3)
     > x.list <- list(letters, x.numeric)
     > x.dataframe <- data.frame(
     + X = letters,
     + Y = x.numeric[2],
     + Z = factor(letters),
     + stringsAsFactors = FALSE
     + )
     > x.matrix.num <- as.matrix(x.numeric)
     > x.matrix.letter <- as.matrix(letters)
     > x.dataframe.round <- x.dataframe
     > x.dataframe.round$Y <- signif(x.dataframe.round$Y, 14)
     > x.factor <- factor(letters)
     > x.array.num <- as.array(x.numeric)
     >
     > # tests using detailed numbers
     > stopifnot(
     + !identical(x.numeric, signif(x.numeric, 14))
     + )
     > stopifnot(
     + !identical(x.matrix.num, signif(x.matrix.num, 14))
     + )
     > # returns the correct SHA1
     > stopifnot(
     + identical(
     + sha1(x.numeric),
     + {
     + z <- digest:::num2hex(x.numeric)
     + attr(z, "digest::sha1") <- list(
     + class = class(x.numeric),
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(letters),
     + {
     + z <- letters
     + attr(z, "digest::sha1") <- list(
     + class = "character",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.list),
     + {
     + z <- sapply(x.list, sha1)
     + attr(z, "digest::sha1") <- list(
     + class = "list",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.dataframe),
     + {
     + z <- sapply(x.dataframe, sha1)
     + attr(z, "digest::sha1") <- list(
     + class = "data.frame",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.matrix.num),
     + {
     + z <- matrix(
     + apply(x.matrix.num, 2, digest:::num2hex),
     + ncol = ncol(x.matrix.num)
     + )
     + attr(z, "digest::sha1") <- list(
     + class = "matrix",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.matrix.letter),
     + {
     + z <- x.matrix.letter
     + attr(z, "digest::sha1") <- list(
     + class = "matrix",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.factor),
     + {
     + z <- x.factor
     + attr(z, "digest::sha1") <- list(
     + class = "factor",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > # a matrix and a vector should have a different hash
     > stopifnot(
     + !identical(
     + sha1(x.numeric),
     + sha1(matrix(x.numeric, nrow = 1))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(x.numeric),
     + sha1(matrix(x.numeric, ncol = 1))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(letters),
     + sha1(matrix(letters, nrow = 1))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(letters),
     + sha1(matrix(letters, ncol = 1))
     + )
     + )
     >
     > # character(0) and numeric(0) should have a different hash
     > stopifnot(!identical(sha1(character(0)), sha1(numeric(0))))
     >
     > # a POSIXct and a POSIXlt should give a different hash
     > z <- as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC")
     > stopifnot(
     + !identical(
     + sha1(z),
     + sha1(as.POSIXlt(z))
     + )
     + )
     >
     > lm.model.0 <- lm(weight ~ Time, data = ChickWeight)
     > lm.model.1 <- lm(weight ~ 1, data = ChickWeight)
     > glm.model.0 <- glm(weight ~ Time, data = ChickWeight, family = poisson)
     > glm.model.1 <- glm(weight ~ 1, data = ChickWeight, family = poisson)
     >
     > anova.list <- list(
     + lm = anova(lm.model.0, lm.model.1),
     + glm = anova(glm.model.0, glm.model.1),
     + glm.test = anova(glm.model.0, glm.model.1, test = "Chisq")
     + )
     >
     > # works with lm anova"
     > stopifnot(
     + identical(
     + sha1(anova.list[["lm"]]),
     + {
     + y <- apply(
     + anova.list[["lm"]],
     + 1,
     + digest:::num2hex,
     + digits = 4,
     + zapsmall = 7
     + )
     + attr(y, "digest::sha1") <- list(
     + class = c("anova", "data.frame"),
     + digits = 4L,
     + zapsmall = 7L
     + )
     + digest(y, algo = "sha1")
     + }
     + )
     + )
     > # works with glm anova"
     > stopifnot(
     + identical(
     + sha1(anova.list[["glm"]]),
     + {
     + y <- apply(
     + anova.list[["glm"]],
     + 1,
     + digest:::num2hex,
     + digits = 4,
     + zapsmall = 7
     + )
     + attr(y, "digest::sha1") <- list(
     + class = c("anova", "data.frame"),
     + digits = 4L,
     + zapsmall = 7L
     + )
     + digest(y, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(anova.list[["glm.test"]]),
     + {
     + y <- apply(
     + anova.list[["glm.test"]],
     + 1,
     + digest:::num2hex,
     + digits = 4,
     + zapsmall = 7
     + )
     + attr(y, "digest::sha1") <- list(
     + class = c("anova", "data.frame"),
     + digits = 4L,
     + zapsmall = 7L
     + )
     + digest(y, algo = "sha1")
     + }
     + )
     + )
     >
     > test.element <- list(
     + # NULL
     + NULL,
     + # empty classes
     + logical(0), integer(0), numeric(0), character(0), list(), data.frame(),
     + # scalar
     + TRUE, FALSE, 1L, 1, "a",
     + # date. Make sure to add the time zone. Otherwise the test might fail
     + as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC"),
     + # vector
     + c(TRUE, FALSE), 1:3, seq(0, 10, length = 4), letters[1:3],
     + factor(letters[4:6]),
     + as.POSIXct(c("2015-01-02 03:04:06.07", "1960-12-31 23:59:59"), tz = "UTC")
     + )
     > select.vector <- which(sapply(test.element, length) > 1)
     > test.element <- c(
     + test.element,
     + # add a data.frame
     + list(expand.grid(test.element[select.vector])),
     + # add a list
     + list(test.element[select.vector]),
     + # add matrices
     + list(matrix(1:10)),
     + list(matrix(seq(0, 10, length = 4))),
     + list(matrix(letters))
     + )
     > # different values for digits or zapsmall gives different hashes
     > # expect for NULL
     > stopifnot(
     + identical(
     + sha1(NULL, digits = 14),
     + sha1(NULL, digits = 13)
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(NULL, zapsmall = 14),
     + sha1(NULL, zapsmall = 13)
     + )
     + )
     > for (i in tail(seq_along(test.element), -1)) {
     + stopifnot(
     + !identical(
     + sha1(test.element[[i]], digits = 14),
     + sha1(test.element[[i]], digits = 13)
     + )
     + )
     + stopifnot(
     + !identical(
     + sha1(test.element[[i]], zapsmall = 7),
     + sha1(test.element[[i]], zapsmall = 6)
     + )
     + )
     + }
     > test.element <- c(test.element, anova.list)
     >
     > cat("\ncorrect <- c(\n")
    
     correct <- c(
     > cat(
     + sprintf(" \"%s\"", sapply(test.element, sha1)),
     + sep = ",\n"
     + )
     "8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
     "d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
     "af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
     "0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
     "095886422ad26e315c0960ef6b09842a1f9cc0ce",
     "6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
     "c1113ba008a349de64da2a7a724e501c1eb3929b",
     "6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
     "1c1b5393c68a643bc79c277c6d7374d0b30cd985",
     "b48c17a2ac82601ff38df374f87d76005fb61cbd",
     "35280c99aa6a48bfc2810b72b763ccac0f632207",
     "f757cc017308d217f35ed8f0c001a57b97308fb7",
     "cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
     "a14384d1997440bad13b97b3ccfb3b8c0392e79a",
     "555f6bea49e58a2c2541060a21c2d4f9078c3086",
     "631d18dec342e2cb87614864ba525ebb9ad6a124",
     "b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
     "25485ba7e315956267b3fdc521b421bbb046325d",
     "6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
     "cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
     "2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
     "270ed85d46524a59e3274d89a1bbf693521cb6af",
     "60e09482f12fda20f7d4a70e379c969c5a73f512",
     "10380001af2a541b5feefc7aab9f719b67330a42",
     "4580ff07f27eb8321421efac1676a80d9239572a",
     "d3022c5a223caaf77e9c564e024199e5d6f51bd5",
     "f54742ac61edd8c3980354620816c762b524dfc7"
     > cat(")\n")
     )
     >
     > correct <- c(
     + "8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
     + "d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
     + "af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
     + "0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
     + "095886422ad26e315c0960ef6b09842a1f9cc0ce",
     + "6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
     + "c1113ba008a349de64da2a7a724e501c1eb3929b",
     + "6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
     + "1c1b5393c68a643bc79c277c6d7374d0b30cd985",
     + "b48c17a2ac82601ff38df374f87d76005fb61cbd",
     + "35280c99aa6a48bfc2810b72b763ccac0f632207",
     + "f757cc017308d217f35ed8f0c001a57b97308fb7",
     + "cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
     + "a14384d1997440bad13b97b3ccfb3b8c0392e79a",
     + "555f6bea49e58a2c2541060a21c2d4f9078c3086",
     + "631d18dec342e2cb87614864ba525ebb9ad6a124",
     + "b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
     + "25485ba7e315956267b3fdc521b421bbb046325d",
     + "6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
     + "cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
     + "2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
     + "270ed85d46524a59e3274d89a1bbf693521cb6af",
     + "60e09482f12fda20f7d4a70e379c969c5a73f512",
     + "10380001af2a541b5feefc7aab9f719b67330a42",
     + "4580ff07f27eb8321421efac1676a80d9239572a",
     + "d3022c5a223caaf77e9c564e024199e5d6f51bd5",
     + "f54742ac61edd8c3980354620816c762b524dfc7"
     + )
     > # each object should yield a different hash
     > stopifnot(!any(duplicated(correct)))
     > # returns the same SHA1 on both 32-bit and 64-bit OS"
     > for (i in seq_along(test.element)) {
     + stopifnot(
     + identical(
     + sha1(test.element[[i]]),
     + correct[i]
     + )
     + )
     + }
     >
     > # does work with empty lists and data.frames
     > stopifnot(is.character(sha1(list())))
     > stopifnot(is.character(sha1(data.frame())))
     > stopifnot(is.character(sha1(list(a = 1, b = list(), c = data.frame()))))
     >
     > # does work with complex type
     > stopifnot(is.character(sha1(2 + 5i))) # single complex number
     > stopifnot(is.character(sha1(1:10 + 5i))) # vector of complex numbers
     >
     > # complex number with only the real part should be different from real number
     > stopifnot(sha1(2) != sha1(2 + 0i))
     >
     > # does work with Date type
     > stopifnot(is.character(sha1(Sys.Date())))
     > stopifnot(sha1(as.Date("1980-01-01")) != sha1(as.Date("1990-01-01")))
     >
     > # different hashes for differently shaped arrays that contain the same data
     > data <- 1:8
     > a <- array(data, dim = c(2,2,2)) # cube 2x2x2
     > b <- array(data, dim = c(2,4,1)) # matrix 2x4
     > stopifnot(sha1(a) != sha1(b))
     >
     > # test error message
     > junk <- pi
     > class(junk) <- c("A", "B")
     > error.message <- try(sha1(junk))
     Error : sha1() has no method for the 'A', 'B' class
     > stopifnot(
     + grepl("sha1\\(\\) has no method for the 'A', 'B' class", error.message)
     + )
     >
     > junk <- function(
     + x, y = list(...), test = TRUE, start = NULL, text = "abc", family = poisson,
     + ...
     + ){
     + sha1(x)
     + }
     > stopifnot(sha1(junk) == "be194e8cdae926c13fd4e2c65bf6cb7a28dd0505")
     > stopifnot(sha1(junk) == sha1(junk, environment = TRUE))
     > stopifnot(sha1(junk) != sha1(junk, environment = FALSE))
     >
     > stopifnot(
     + sha1(matrix(integer(0))) == "e13485e1b995f3e36d43674dcbfedea08ce237bc"
     + )
     > stopifnot(
     + !identical(
     + sha1(matrix(integer(0))),
     + sha1(matrix(character(0)))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(matrix(integer(0))),
     + sha1(matrix(numeric(0)))
     + )
     + )
     >
     > if (getRversion() < "3.5.0") {
     + stopifnot(
     + identical(
     + sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", NULL)),
     + "93ab6a61f1a2ad50d4bf58396dc38cd3821b2eaf"
     + )
     + )
     + }
     Error: identical(sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", .... is not TRUE
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.6.15
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AESTest.R' [0s]
     Comparing 'AESTest.Rout' to 'AESTest.Rout.save' ... OK
     Running 'digestTest.R' [1s]
     Comparing 'digestTest.Rout' to 'digestTest.Rout.save' ... OK
     Running 'hmacTest.R' [0s]
     Comparing 'hmacTest.Rout' to 'hmacTest.Rout.save' ... OK
     Running 'load-unload.R' [0s]
     Running 'num2hexTest.R' [1s]
     Running 'sha1Test.R' [1s]
    Running the tests in 'tests/sha1Test.R' failed.
    Complete output:
     >
     > ## tests for digest, taken from the examples in the manual page
     >
     > stopifnot(require(digest))
     Loading required package: digest
     >
     > # calculate sha1 fingerprints
     > x.numeric <- seq(0, 1, length = 4 ^ 3)
     > x.list <- list(letters, x.numeric)
     > x.dataframe <- data.frame(
     + X = letters,
     + Y = x.numeric[2],
     + Z = factor(letters),
     + stringsAsFactors = FALSE
     + )
     > x.matrix.num <- as.matrix(x.numeric)
     > x.matrix.letter <- as.matrix(letters)
     > x.dataframe.round <- x.dataframe
     > x.dataframe.round$Y <- signif(x.dataframe.round$Y, 14)
     > x.factor <- factor(letters)
     > x.array.num <- as.array(x.numeric)
     >
     > # tests using detailed numbers
     > stopifnot(
     + !identical(x.numeric, signif(x.numeric, 14))
     + )
     > stopifnot(
     + !identical(x.matrix.num, signif(x.matrix.num, 14))
     + )
     > # returns the correct SHA1
     > stopifnot(
     + identical(
     + sha1(x.numeric),
     + {
     + z <- digest:::num2hex(x.numeric)
     + attr(z, "digest::sha1") <- list(
     + class = class(x.numeric),
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(letters),
     + {
     + z <- letters
     + attr(z, "digest::sha1") <- list(
     + class = "character",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.list),
     + {
     + z <- sapply(x.list, sha1)
     + attr(z, "digest::sha1") <- list(
     + class = "list",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.dataframe),
     + {
     + z <- sapply(x.dataframe, sha1)
     + attr(z, "digest::sha1") <- list(
     + class = "data.frame",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.matrix.num),
     + {
     + z <- matrix(
     + apply(x.matrix.num, 2, digest:::num2hex),
     + ncol = ncol(x.matrix.num)
     + )
     + attr(z, "digest::sha1") <- list(
     + class = "matrix",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.matrix.letter),
     + {
     + z <- x.matrix.letter
     + attr(z, "digest::sha1") <- list(
     + class = "matrix",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(x.factor),
     + {
     + z <- x.factor
     + attr(z, "digest::sha1") <- list(
     + class = "factor",
     + digits = 14L,
     + zapsmall = 7L
     + )
     + digest(z, algo = "sha1")
     + }
     + )
     + )
     > # a matrix and a vector should have a different hash
     > stopifnot(
     + !identical(
     + sha1(x.numeric),
     + sha1(matrix(x.numeric, nrow = 1))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(x.numeric),
     + sha1(matrix(x.numeric, ncol = 1))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(letters),
     + sha1(matrix(letters, nrow = 1))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(letters),
     + sha1(matrix(letters, ncol = 1))
     + )
     + )
     >
     > # character(0) and numeric(0) should have a different hash
     > stopifnot(!identical(sha1(character(0)), sha1(numeric(0))))
     >
     > # a POSIXct and a POSIXlt should give a different hash
     > z <- as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC")
     > stopifnot(
     + !identical(
     + sha1(z),
     + sha1(as.POSIXlt(z))
     + )
     + )
     >
     > lm.model.0 <- lm(weight ~ Time, data = ChickWeight)
     > lm.model.1 <- lm(weight ~ 1, data = ChickWeight)
     > glm.model.0 <- glm(weight ~ Time, data = ChickWeight, family = poisson)
     > glm.model.1 <- glm(weight ~ 1, data = ChickWeight, family = poisson)
     >
     > anova.list <- list(
     + lm = anova(lm.model.0, lm.model.1),
     + glm = anova(glm.model.0, glm.model.1),
     + glm.test = anova(glm.model.0, glm.model.1, test = "Chisq")
     + )
     >
     > # works with lm anova"
     > stopifnot(
     + identical(
     + sha1(anova.list[["lm"]]),
     + {
     + y <- apply(
     + anova.list[["lm"]],
     + 1,
     + digest:::num2hex,
     + digits = 4,
     + zapsmall = 7
     + )
     + attr(y, "digest::sha1") <- list(
     + class = c("anova", "data.frame"),
     + digits = 4L,
     + zapsmall = 7L
     + )
     + digest(y, algo = "sha1")
     + }
     + )
     + )
     > # works with glm anova"
     > stopifnot(
     + identical(
     + sha1(anova.list[["glm"]]),
     + {
     + y <- apply(
     + anova.list[["glm"]],
     + 1,
     + digest:::num2hex,
     + digits = 4,
     + zapsmall = 7
     + )
     + attr(y, "digest::sha1") <- list(
     + class = c("anova", "data.frame"),
     + digits = 4L,
     + zapsmall = 7L
     + )
     + digest(y, algo = "sha1")
     + }
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(anova.list[["glm.test"]]),
     + {
     + y <- apply(
     + anova.list[["glm.test"]],
     + 1,
     + digest:::num2hex,
     + digits = 4,
     + zapsmall = 7
     + )
     + attr(y, "digest::sha1") <- list(
     + class = c("anova", "data.frame"),
     + digits = 4L,
     + zapsmall = 7L
     + )
     + digest(y, algo = "sha1")
     + }
     + )
     + )
     >
     > test.element <- list(
     + # NULL
     + NULL,
     + # empty classes
     + logical(0), integer(0), numeric(0), character(0), list(), data.frame(),
     + # scalar
     + TRUE, FALSE, 1L, 1, "a",
     + # date. Make sure to add the time zone. Otherwise the test might fail
     + as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC"),
     + # vector
     + c(TRUE, FALSE), 1:3, seq(0, 10, length = 4), letters[1:3],
     + factor(letters[4:6]),
     + as.POSIXct(c("2015-01-02 03:04:06.07", "1960-12-31 23:59:59"), tz = "UTC")
     + )
     > select.vector <- which(sapply(test.element, length) > 1)
     > test.element <- c(
     + test.element,
     + # add a data.frame
     + list(expand.grid(test.element[select.vector])),
     + # add a list
     + list(test.element[select.vector]),
     + # add matrices
     + list(matrix(1:10)),
     + list(matrix(seq(0, 10, length = 4))),
     + list(matrix(letters))
     + )
     > # different values for digits or zapsmall gives different hashes
     > # expect for NULL
     > stopifnot(
     + identical(
     + sha1(NULL, digits = 14),
     + sha1(NULL, digits = 13)
     + )
     + )
     > stopifnot(
     + identical(
     + sha1(NULL, zapsmall = 14),
     + sha1(NULL, zapsmall = 13)
     + )
     + )
     > for (i in tail(seq_along(test.element), -1)) {
     + stopifnot(
     + !identical(
     + sha1(test.element[[i]], digits = 14),
     + sha1(test.element[[i]], digits = 13)
     + )
     + )
     + stopifnot(
     + !identical(
     + sha1(test.element[[i]], zapsmall = 7),
     + sha1(test.element[[i]], zapsmall = 6)
     + )
     + )
     + }
     > test.element <- c(test.element, anova.list)
     >
     > cat("\ncorrect <- c(\n")
    
     correct <- c(
     > cat(
     + sprintf(" \"%s\"", sapply(test.element, sha1)),
     + sep = ",\n"
     + )
     "8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
     "d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
     "af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
     "0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
     "095886422ad26e315c0960ef6b09842a1f9cc0ce",
     "6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
     "c1113ba008a349de64da2a7a724e501c1eb3929b",
     "6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
     "1c1b5393c68a643bc79c277c6d7374d0b30cd985",
     "b48c17a2ac82601ff38df374f87d76005fb61cbd",
     "35280c99aa6a48bfc2810b72b763ccac0f632207",
     "f757cc017308d217f35ed8f0c001a57b97308fb7",
     "cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
     "a14384d1997440bad13b97b3ccfb3b8c0392e79a",
     "555f6bea49e58a2c2541060a21c2d4f9078c3086",
     "631d18dec342e2cb87614864ba525ebb9ad6a124",
     "b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
     "25485ba7e315956267b3fdc521b421bbb046325d",
     "6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
     "cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
     "2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
     "270ed85d46524a59e3274d89a1bbf693521cb6af",
     "60e09482f12fda20f7d4a70e379c969c5a73f512",
     "10380001af2a541b5feefc7aab9f719b67330a42",
     "4580ff07f27eb8321421efac1676a80d9239572a",
     "d3022c5a223caaf77e9c564e024199e5d6f51bd5",
     "f54742ac61edd8c3980354620816c762b524dfc7"
     > cat(")\n")
     )
     >
     > correct <- c(
     + "8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
     + "d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
     + "af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
     + "0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
     + "095886422ad26e315c0960ef6b09842a1f9cc0ce",
     + "6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
     + "c1113ba008a349de64da2a7a724e501c1eb3929b",
     + "6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
     + "1c1b5393c68a643bc79c277c6d7374d0b30cd985",
     + "b48c17a2ac82601ff38df374f87d76005fb61cbd",
     + "35280c99aa6a48bfc2810b72b763ccac0f632207",
     + "f757cc017308d217f35ed8f0c001a57b97308fb7",
     + "cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
     + "a14384d1997440bad13b97b3ccfb3b8c0392e79a",
     + "555f6bea49e58a2c2541060a21c2d4f9078c3086",
     + "631d18dec342e2cb87614864ba525ebb9ad6a124",
     + "b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
     + "25485ba7e315956267b3fdc521b421bbb046325d",
     + "6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
     + "cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
     + "2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
     + "270ed85d46524a59e3274d89a1bbf693521cb6af",
     + "60e09482f12fda20f7d4a70e379c969c5a73f512",
     + "10380001af2a541b5feefc7aab9f719b67330a42",
     + "4580ff07f27eb8321421efac1676a80d9239572a",
     + "d3022c5a223caaf77e9c564e024199e5d6f51bd5",
     + "f54742ac61edd8c3980354620816c762b524dfc7"
     + )
     > # each object should yield a different hash
     > stopifnot(!any(duplicated(correct)))
     > # returns the same SHA1 on both 32-bit and 64-bit OS"
     > for (i in seq_along(test.element)) {
     + stopifnot(
     + identical(
     + sha1(test.element[[i]]),
     + correct[i]
     + )
     + )
     + }
     >
     > # does work with empty lists and data.frames
     > stopifnot(is.character(sha1(list())))
     > stopifnot(is.character(sha1(data.frame())))
     > stopifnot(is.character(sha1(list(a = 1, b = list(), c = data.frame()))))
     >
     > # does work with complex type
     > stopifnot(is.character(sha1(2 + 5i))) # single complex number
     > stopifnot(is.character(sha1(1:10 + 5i))) # vector of complex numbers
     >
     > # complex number with only the real part should be different from real number
     > stopifnot(sha1(2) != sha1(2 + 0i))
     >
     > # does work with Date type
     > stopifnot(is.character(sha1(Sys.Date())))
     > stopifnot(sha1(as.Date("1980-01-01")) != sha1(as.Date("1990-01-01")))
     >
     > # different hashes for differently shaped arrays that contain the same data
     > data <- 1:8
     > a <- array(data, dim = c(2,2,2)) # cube 2x2x2
     > b <- array(data, dim = c(2,4,1)) # matrix 2x4
     > stopifnot(sha1(a) != sha1(b))
     >
     > # test error message
     > junk <- pi
     > class(junk) <- c("A", "B")
     > error.message <- try(sha1(junk))
     Error : sha1() has no method for the 'A', 'B' class
     > stopifnot(
     + grepl("sha1\\(\\) has no method for the 'A', 'B' class", error.message)
     + )
     >
     > junk <- function(
     + x, y = list(...), test = TRUE, start = NULL, text = "abc", family = poisson,
     + ...
     + ){
     + sha1(x)
     + }
     > stopifnot(sha1(junk) == "be194e8cdae926c13fd4e2c65bf6cb7a28dd0505")
     > stopifnot(sha1(junk) == sha1(junk, environment = TRUE))
     > stopifnot(sha1(junk) != sha1(junk, environment = FALSE))
     >
     > stopifnot(
     + sha1(matrix(integer(0))) == "e13485e1b995f3e36d43674dcbfedea08ce237bc"
     + )
     > stopifnot(
     + !identical(
     + sha1(matrix(integer(0))),
     + sha1(matrix(character(0)))
     + )
     + )
     > stopifnot(
     + !identical(
     + sha1(matrix(integer(0))),
     + sha1(matrix(numeric(0)))
     + )
     + )
     >
     > if (getRversion() < "3.5.0") {
     + stopifnot(
     + identical(
     + sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", NULL)),
     + "93ab6a61f1a2ad50d4bf58396dc38cd3821b2eaf"
     + )
     + )
     + }
     Error: identical(sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", .... is not TRUE
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Package drat

Current CRAN status: OK: 12

Package gaussfacts

Current CRAN status: OK: 12

Package gcbd

Current CRAN status: WARN: 1, NOTE: 8

Version: 0.2.6
Flags: --no-examples --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gputools’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.6
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gputools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gputools’
Flavors: r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package gettz

Current CRAN status: NOTE: 6, OK: 6

Version: 0.0.3
Check: compiled code
Result: NOTE
    File ‘gettz/libs/gettz.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package gunsales

Current CRAN status: WARN: 1, OK: 11

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    sh: line 1: 29372 Trace/BPT trap: 5 /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/x13ashtml /var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T//RtmpjUDYzi/x13717e8f67458/iofile -n -s 2> /dev/null
    dyld: lazy symbol binding failed: Symbol not found: _mkostemp
     Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: _mkostemp
     Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
     Expected in: /usr/lib/libSystem.B.dylib
    
    
    Program received signal SIGTRAP: Trace/breakpoint trap.
    
    Backtrace for this error:
    #0 0x121f26579
    #1 0x121f25945
    #2 0x7fff93ac4529
    Quitting from lines 33-34 (gunsales.Rmd)
    Error: processing vignette 'gunsales.Rmd' failed with diagnostics:
    X-13 has returned a non-zero exist status, which means that the current spec file cannot be processed for an unknown reason.
    Execution halted
Flavor: r-release-osx-x86_64

Package inline

Current CRAN status: OK: 12

Package linl

Current CRAN status: OK: 12

Package littler

Current CRAN status: OK: 6

Package nanotime

Current CRAN status: ERROR: 1, OK: 11

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘POSIXt.R’
     Running ‘data.frame.R’
     Running ‘runTests.R’
     Running ‘simpleTests.R’
     Running ‘zooTests.R’
    Running the tests in ‘tests/runTests.R’ failed.
    Complete output:
     >
     > pkg <- "nanotime"
     >
     > if (!requireNamespace("RUnit", quietly = TRUE)) {
     + cat("R package 'RUnit' cannot be loaded -- no unit tests run for package", pkg, "\n")
     + } else if (!requireNamespace("nanotime", quietly = TRUE)) {
     + cat("R package 'nanotime' cannot be loaded -- no unit tests run for package", pkg, "\n")
     + } else if (!requireNamespace("bit64", quietly = TRUE)) {
     + cat("R package 'bit64' cannot be loaded -- no unit tests run for package", pkg, "\n")
     + } else {
     +
     + library(RUnit)
     + library(nanotime)
     + library(bit64)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name=paste(pkg, "Unit Tests"),
     + dirs=system.file("unitTests", package=pkg),
     + testFileRegexp = "^test_.+\\.[rR]$",
     + testFuncRegexp = "^[Tt]est+")
     +
     + ## Run tests
     + tests <- runTestSuite(testSuite)
     +
     + ## Print results
     + printTextProtocol(tests)
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) {
     + print(getErrors(tests)$nFail)
     + stop("TEST FAILED!")
     + }
     + if (getErrors(tests)$nErr > 0) {
     + print(getErrors(tests)$nErr)
     + stop("TEST HAD ERRORS!")
     + }
     + if (getErrors(tests)$nTestFunc < 1) {
     + print(getErrors(tests)$nTestFunc)
     + stop("NO TEST FUNCTIONS RUN!")
     + }
     +
     + }
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
    
    
     Executing test function test_data_frame_cbind ... done successfully.
    
    
    
     Executing test function test_data_frame_constructor ... done successfully.
    
    
    
     Executing test function test_data_frame_rbind ... done successfully.
    
    
    
     Executing test function test_ANY_Logic_nano ... Error in 1 | nanotime(1) :
     operations are possible only for numeric, logical or complex types
     done successfully.
    
    
    
     Executing test function test_ANY_minus_nano ... Error in 1 - nanotime(2) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_ANY_plus_nano ... Error in "a" + nanotime(2) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_Math2_nano ... Error in round(new("nanotime", .S3Class = "integer64", structure(4.94065645841247e-324, class = "integer64"))) :
     non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_Math_nano ... Error in sin(nanotime(1)) : non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_as_Date ... done successfully.
    
    
    
     Executing test function test_as_POSIXct ... done successfully.
    
    
    
     Executing test function test_binary_mul ... Note: method with signature 'nanotime#ANY' chosen for function '*',
     target signature 'nanotime#nanotime'.
     "ANY#nanotime" would also be valid
     Error in nanotime(1) * nanotime(2) :
     operation not defined for "nanotime" objects
     In addition: Warning messages:
     1: In check_tzones(target, current) : 'tzone' attributes are inconsistent
     2: In check_tzones(target, current) : 'tzone' attributes are inconsistent
     3: In check_tzones(target, current) : 'tzone' attributes are inconsistent
     done successfully.
    
    
    
     Executing test function test_c ... done successfully.
    
    
    
     Executing test function test_format_default ... done successfully.
    
    
    
     Executing test function test_format_fmt_default ... done successfully.
    
    
    
     Executing test function test_format_fmt_from_options ... Timing stopped at: 0.002 0 0.002
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_fmt_from_parameter ... Timing stopped at: 0.003 0 0.003
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_na ... Timing stopped at: 0.002 0 0.003
     Error in checkEquals(f, exp) : 2 string mismatches
    
     done successfully.
    
    
    
     Executing test function test_format_tz ... Timing stopped at: 0.002 0 0.003
     Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
     1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_tz_from_options ... Timing stopped at: 0.002 0 0.003
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_tzone ... Timing stopped at: 0.003 0 0.003
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_is.na ... done successfully.
    
    
    
     Executing test function test_nano_Logic_ANY ... Error in nanotime(1) | 1 :
     operations are possible only for numeric, logical or complex types
     done successfully.
    
    
    
     Executing test function test_nano_div_ANY ... Error in nanotime(1)/1 : operation not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_nano_minus_ANY ... Error in nanotime(1) - "a" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nano_mul_ANY ... Error in nanotime(1) * 1 : operation not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_nano_mul_nano ... Error in nanotime(1) * nanotime(1) :
     operation not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_nano_plus_ANY ... Error in nanotime(1) + "a" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime_Date ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXct ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXct_keep_names ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXlt ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXlt_keep_names ... done successfully.
    
    
    
     Executing test function test_nanotime_character ... Timing stopped at: 0.006 0 0.006
     Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
     'is.NA' value mismatch: 1 in current 0 in target
    
     done successfully.
    
    
    
     Executing test function test_nanotime_character_keep_names ... Timing stopped at: 0.007 0.001 0.008
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-01T00:00:00.000000001+00:00
     done successfully.
    
    
    
     Executing test function test_nanotime_generic ... done successfully.
    
    
    
     Executing test function test_nanotime_matrix ... Timing stopped at: 0.001 0 0.002
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-11T00:00:00.987654321+00:00
     done successfully.
    
    
    
     Executing test function test_nanotime_numeric_keep_names ... done successfully.
    
    
    
     Executing test function test_subsassign ... done successfully.
    
    
    
     Executing test function test_subset ... done successfully.
    
    
    
     Executing test function test_summary ... done successfully.
    
    
    
     Executing test function test_unary_minus ... Error in -nanotime(1) : unary '-' is not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_unary_plus ... Error in -nanotime(1) : unary '-' is not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_Complex ... Error in Arg(nanotime(1)) : non-numeric argument to function
     done successfully.
    
    
    
     Executing test function test_Logic ... Note: method with signature 'nanotime#ANY' chosen for function '&',
     target signature 'nanotime#nanotime'.
     "ANY#nanotime" would also be valid
     Error in nanotime(1) & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     Error in nanotime(1) & as.integer64(1) :
     operations are possible only for numeric, logical or complex types
     Error in nanotime(1) & TRUE :
     operations are possible only for numeric, logical or complex types
     Error in as.integer64(1) & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     Error in 1L & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     Error in FALSE & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     done successfully.
    
    
    
     Executing test function test_Math ... Error in abs(nanotime(1)) : non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_Math2 ... Error in round(new("nanotime", .S3Class = "integer64", structure(4.94065645841247e-324, class = "integer64")), :
     non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_Summary ... Error in sum(new("nanotime", .S3Class = "integer64", structure(4.94065645841247e-324, class = "integer64")), :
     invalid 'type' (nanotime) of argument
     done successfully.
    
    
    
     Executing test function test_character+nanotime ... Error in "A" + nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_character-nanotime ... Error in "A" - nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_compare_ANY_nanotime ... done successfully.
    
    
    
     Executing test function test_compare_nanotime_ANY ... done successfully.
    
    
    
     Executing test function test_integer+nanotime ... done successfully.
    
    
    
     Executing test function test_nanotime+character ... Error in nanotime(0) + "A" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime+integer ... done successfully.
    
    
    
     Executing test function test_nanotime+integer64 ... done successfully.
    
    
    
     Executing test function test_nanotime+nanotime ... Error in nanotime(1) + nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime+numeric ... done successfully.
    
    
    
     Executing test function test_nanotime-character ... Error in nanotime(0) - "A" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime-integer ... done successfully.
    
    
    
     Executing test function test_nanotime-integer64 ... done successfully.
    
    
    
     Executing test function test_nanotime-nanotime ... done successfully.
    
    
    
     Executing test function test_numeric+nanotime ... done successfully.
    
    
    
     Executing test function test_numeric-nanotime ... Error in 1 - nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_zoo ...
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
     Timing stopped at: 0.022 0.002 0.026
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 2017-02-06T03:36:10.626159000+00:00
     done successfully.
    
     RUNIT TEST PROTOCOL -- Sat Jun 16 23:35:21 2018
     ***********************************************
     Number of test functions: 64
     Number of errors: 3
     Number of failures: 7
    
    
     1 Test Suite :
     nanotime Unit Tests - 64 test functions, 3 errors, 7 failures
     FAILURE in test_format_fmt_from_options: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_format_fmt_from_parameter: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_format_na: Error in checkEquals(f, exp) : 2 string mismatches
    
     FAILURE in test_format_tz: Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
     1 string mismatch
    
     FAILURE in test_format_tz_from_options: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_format_tzone: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_nanotime_character: Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
     'is.NA' value mismatch: 1 in current 0 in target
    
     ERROR in test_nanotime_character_keep_names: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-01T00:00:00.000000001+00:00
     ERROR in test_nanotime_matrix: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-11T00:00:00.987654321+00:00
     ERROR in test_zoo: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 2017-02-06T03:36:10.626159000+00:00
    
    
    
     Details
     ***************************
     Test Suite: nanotime Unit Tests
     Test function regexp: ^[Tt]est+
     Test file regexp: ^test_.+\.[rR]$
     Involved directory:
     /home/ripley/R/Lib32/nanotime/unitTests
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_data.frame.R
     test_data_frame_cbind: (1 checks) ... OK (0.2 seconds)
     test_data_frame_constructor: (2 checks) ... OK (0.01 seconds)
     test_data_frame_rbind: (1 checks) ... OK (0.04 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_nanotime.R
     test_ANY_Logic_nano: (1 checks) ... OK (0.01 seconds)
     test_ANY_minus_nano: (1 checks) ... OK (0 seconds)
     test_ANY_plus_nano: (1 checks) ... OK (0 seconds)
     test_Math2_nano: (1 checks) ... OK (0 seconds)
     test_Math_nano: (1 checks) ... OK (0 seconds)
     test_as_Date: (1 checks) ... OK (0.01 seconds)
     test_as_POSIXct: (3 checks) ... OK (0.11 seconds)
     test_binary_mul: (1 checks) ... OK (0.01 seconds)
     test_c: (2 checks) ... OK (0 seconds)
     test_format_default: (3 checks) ... OK (0.01 seconds)
     test_format_fmt_default: (1 checks) ... OK (0 seconds)
     test_format_fmt_from_options: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_format_fmt_from_parameter: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_format_na: FAILURE !! (check number 1)
     Error in checkEquals(f, exp) : 2 string mismatches
    
     test_format_tz: FAILURE !! (check number 1)
     Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
     1 string mismatch
    
     test_format_tz_from_options: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_format_tzone: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_is.na: (2 checks) ... OK (0 seconds)
     test_nano_Logic_ANY: (1 checks) ... OK (0.12 seconds)
     test_nano_div_ANY: (1 checks) ... OK (0 seconds)
     test_nano_minus_ANY: (1 checks) ... OK (0 seconds)
     test_nano_mul_ANY: (1 checks) ... OK (0 seconds)
     test_nano_mul_nano: (1 checks) ... OK (0 seconds)
     test_nano_plus_ANY: (1 checks) ... OK (0 seconds)
     test_nanotime_Date: (1 checks) ... OK (0 seconds)
     test_nanotime_POSIXct: (1 checks) ... OK (0 seconds)
     test_nanotime_POSIXct_keep_names: (1 checks) ... OK (0 seconds)
     test_nanotime_POSIXlt: (1 checks) ... OK (0 seconds)
     test_nanotime_POSIXlt_keep_names: (1 checks) ... OK (0 seconds)
     test_nanotime_character: FAILURE !! (check number 3)
     Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
     'is.NA' value mismatch: 1 in current 0 in target
    
     test_nanotime_character_keep_names: ERROR !!
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-01T00:00:00.000000001+00:00
     test_nanotime_generic: (2 checks) ... OK (0 seconds)
     test_nanotime_matrix: ERROR !!
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-11T00:00:00.987654321+00:00
     test_nanotime_numeric_keep_names: (1 checks) ... OK (0 seconds)
     test_subsassign: (2 checks) ... OK (0.01 seconds)
     test_subset: (2 checks) ... OK (0 seconds)
     test_summary: (2 checks) ... OK (0.02 seconds)
     test_unary_minus: (1 checks) ... OK (0 seconds)
     test_unary_plus: (1 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_ops.R
     test_Complex: (1 checks) ... OK (0 seconds)
     test_Logic: (6 checks) ... OK (0.02 seconds)
     test_Math: (1 checks) ... OK (0 seconds)
     test_Math2: (1 checks) ... OK (0 seconds)
     test_Summary: (4 checks) ... OK (0.02 seconds)
     test_character+nanotime: (1 checks) ... OK (0 seconds)
     test_character-nanotime: (1 checks) ... OK (0 seconds)
     test_compare_ANY_nanotime: (7 checks) ... OK (0.02 seconds)
     test_compare_nanotime_ANY: (9 checks) ... OK (0.07 seconds)
     test_integer+nanotime: (2 checks) ... OK (0.01 seconds)
     test_nanotime+character: (1 checks) ... OK (0 seconds)
     test_nanotime+integer: (2 checks) ... OK (0.01 seconds)
     test_nanotime+integer64: (2 checks) ... OK (0.01 seconds)
     test_nanotime+nanotime: (1 checks) ... OK (0.01 seconds)
     test_nanotime+numeric: (2 checks) ... OK (0.01 seconds)
     test_nanotime-character: (1 checks) ... OK (0 seconds)
     test_nanotime-integer: (2 checks) ... OK (0.01 seconds)
     test_nanotime-integer64: (2 checks) ... OK (0.01 seconds)
     test_nanotime-nanotime: (2 checks) ... OK (0 seconds)
     test_numeric+nanotime: (2 checks) ... OK (0.01 seconds)
     test_numeric-nanotime: (1 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_zoo.R
     test_zoo: ERROR !!
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 2017-02-06T03:36:10.626159000+00:00
     [1] 7
     Error: TEST FAILED!
     Execution halted
Flavor: r-patched-solaris-x86

Package pinp

Current CRAN status: OK: 12

Package pkgKitten

Current CRAN status: OK: 12

Package prrd

Current CRAN status: OK: 12

Package random

Current CRAN status: NOTE: 1, OK: 11

Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'random-essay.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.4 \setpapersize
     {USletter} % use USletter paper^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package RApiDatetime

Current CRAN status: OK: 12

Package RApiSerialize

Current CRAN status: OK: 12

Package Rblpapi

Current CRAN status: NOTE: 6, OK: 5

Version: 0.3.8
Check: installed package size
Result: NOTE
     installed size is 15.0Mb
     sub-directories of 1Mb or more:
     blp 7.1Mb
     libs 7.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package Rcpp

Current CRAN status: NOTE: 12

Additional issues

clang-UBSAN

Version: 0.12.17
Check: foreign function calls
Result: NOTE
    Registration problem:
     symbol ‘symbol’ in the local frame:
     .Call(symbol)
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.12.17
Check: installed package size
Result: NOTE
     installed size is 15.0Mb
     sub-directories of 1Mb or more:
     doc 2.7Mb
     include 6.4Mb
     libs 4.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RcppAnnoy

Current CRAN status: OK: 12

Additional issues

gcc-UBSAN

Package RcppAPT

Current CRAN status: ERROR: 2, OK: 4

Version: 0.0.4
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppArmadillo

Current CRAN status: ERROR: 4, WARN: 4, NOTE: 4

Additional issues

clang-ASAN

Version: 0.8.500.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    ! LaTeX Error: Lonely \item--perhaps a missing list environment.
    
    Error: processing vignette ‘RcppArmadillo-sparseMatrix.Rmd’ failed with diagnostics:
    Failed to compile RcppArmadillo-sparseMatrix.tex. See RcppArmadillo-sparseMatrix.log for more info.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.8.500.0
Check: installed package size
Result: NOTE
     installed size is 7.8Mb
     sub-directories of 1Mb or more:
     include 5.4Mb
     libs 1.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [198s/225s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Copyright (C) 2010 - 2013 Dirk Eddelbuettel, Romain Francois and Douglas Bates
     > # Copyright (C) 2014 - 2017 Dirk Eddelbuettel
     > # Earlier copyrights Gregor Gorjanc, Martin Maechler and Murray Stokely as detailed below
     > #
     > # This file is part of RcppArmadillo.
     > #
     > # RcppArmadillo is free software: you can redistribute it and/or
     > # modify it under the terms of the GNU General Public License as
     > # published by the Free Software Foundation, either version 2 of the
     > # License, or (at your option) any later version.
     > #
     > # RcppArmadillo is distributed in the hope that it will be useful, but
     > # WITHOUT ANY WARRANTY; without even the implied warranty of
     > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     > # General Public License for more details.
     > #
     > # You should have received a copy of the GNU General Public License
     > # along with RcppArmadillo. If not, see <http://www.gnu.org/licenses/>.
     >
     > ## doRUnit.R --- Run RUnit tests
     > ##
     > ## with credits to package fUtilities in RMetrics
     > ## which credits Gregor Gojanc's example in CRAN package 'gdata'
     > ## as per the R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
     > ## and changed further by Martin Maechler
     > ## and more changes by Murray Stokely in HistogramTools
     > ## and then used adapted in RProtoBuf
     > ## and now used in Rcpp and here
     > ##
     > ## Dirk Eddelbuettel, Feb - June 2014
     >
     > if (requireNamespace("RUnit", quietly=TRUE) &&
     + requireNamespace("RcppArmadillo", quietly=TRUE)) {
     +
     + library(RUnit)
     + library(RcppArmadillo)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name="RcppArmadillo Unit Tests",
     + dirs=system.file("unitTests", package = "RcppArmadillo"),
     + testFuncRegexp = "^[Tt]est.+")
     +
     + Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
     +
     + tests <- runTestSuite(testSuite) # run tests
     + printTextProtocol(tests) # print results
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
     + if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
     + if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
     + }
    
    
     Executing test function test.armadillo.as_vector ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.matrix.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.unsigned.as ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.ref ... done successfully.
    
    
    
     Executing test function test.as.Col ... done successfully.
    
    
    
     Executing test function test.as.Mat ... done successfully.
    
    
    
     Executing test function test.as.Row ... done successfully.
    
    
    
     Executing test function test.cxmat ... done successfully.
    
    
    
     Executing test function test.mtGlue ... done successfully.
    
    
    
     Executing test function test.mtOp ... done successfully.
    
    
    
     Executing test function test.sugar ... done successfully.
    
    
    
     Executing test function test.sugar.cplx ... done successfully.
    
    
    
     Executing test function test.wrap.Glue ... done successfully.
    
    
    
     Executing test function test.wrap.Op ... done successfully.
    
    
    
     Executing test function test.wrap.R ... done successfully.
    
    
    
     Executing test function test.Rlapack ... done successfully.
    
    
    
     Executing test function test.complex ... done successfully.
    
    
    
     Executing test function test.cube ... done successfully.
    
    
    
     Executing test function test.fastLm ... done successfully.
    
    
    
     Executing test function test.fastLm.default ... done successfully.
    
    
    
     Executing test function test.fastLm.formula ... done successfully.
    
    
    
     Executing test function test.summary.fastLm ... done successfully.
    
    
    
     Executing test function test.rmultinom ... Error in rmultinom(n, size, prob) : NA in probability vector
     Error in rmultinomC(n, size, prob) : NAs not allowed in probability
     Error in rmultinom(n, size, prob) : no positive probabilities
     Error in rmultinomC(n, size, prob) : Not enough positive probabilities
     done successfully.
    
    
    
     Executing test function test.randi ... done successfully.
    
    
    
     Executing test function test.randi.seed ... done successfully.
    
    
    
     Executing test function test.randn ... done successfully.
    
    
    
     Executing test function test.randn.seed ... done successfully.
    
    
    
     Executing test function test.randu ... done successfully.
    
    
    
     Executing test function test.randu.seed ... done successfully.
    
    
    
     Executing test function test.sample ... done successfully.
    
    
    
     Executing test function test.coo2dgt ... done successfully.
    
    
    
     Executing test function test.csc2dgc ... Timing stopped at: 0.017 0.001 0.031
     Error : $ operator not defined for this S4 class
     done successfully.
    
    
    
     Executing test function test.csr2dgr ... done successfully.
    
    
    
     Executing test function test.other ... Error : Only CSC, COO and CSR matrices from SciPy are supported.
     done successfully.
    
    
    
     Executing test function test.as.sparse ... done successfully.
    
    
    
     Executing test function test.sparse.addition ... done successfully.
    
    
    
     Executing test function test.sparse.fromTriplet ... done successfully.
    
    
    
     Executing test function test.sparse.iterators ... done successfully.
    
    
    
     Executing test function test.sparse.list ... done successfully.
    
    
    
     Executing test function test.sparse.multiplication ... done successfully.
    
    
    
     Executing test function test.sparse.sqrt ... done successfully.
    
    
    
     Executing test function test.sparse.square ... done successfully.
    
    
    
     Executing test function test.sparse.transpose ... done successfully.
    
    
    
     Executing test function test.speye ... done successfully.
    
    
    
     Executing test function test.as.ddi2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgc2dgc ... dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     done successfully.
    
    
    
     Executing test function test.as.dgr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgt2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dst2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtt2dgc ... done successfully.
    
    
    
     Executing test function test.as.ind2dgc ... done successfully.
    
    
    
     Executing test function test.as.p2dgc ... done successfully.
    
    
    
     Executing test function test.stop ...
     *** caught segfault ***
     address 0x71, cause 'memory not mapped'
    
     Traceback:
     1: .Call(<pointer: 0x7f73bc8d3a80>, S)
     2: asSpMat(lm)
     3: eval(expr, envir = parent.frame())
     4: doTryCatch(return(expr), name, parentenv, handler)
     5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     6: tryCatchList(expr, classes, parentenv, handlers)
     7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
     8: try(eval(expr, envir = parent.frame()), silent = silent)
     9: checkException(asSpMat(lm))
     10: func()
     11: system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest)
     12: doTryCatch(return(expr), name, parentenv, handler)
     13: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     14: tryCatchList(expr, classes, parentenv, handlers)
     15: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
     16: try(system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest))
     17: .executeTestCase(funcName, envir = sandbox, setUpFunc = .setUp, tearDownFunc = .tearDown)
     18: .sourceTestFile(testFile, testSuite$testFuncRegexp)
     19: runTestSuite(testSuite)
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [181s/210s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Copyright (C) 2010 - 2013 Dirk Eddelbuettel, Romain Francois and Douglas Bates
     > # Copyright (C) 2014 - 2017 Dirk Eddelbuettel
     > # Earlier copyrights Gregor Gorjanc, Martin Maechler and Murray Stokely as detailed below
     > #
     > # This file is part of RcppArmadillo.
     > #
     > # RcppArmadillo is free software: you can redistribute it and/or
     > # modify it under the terms of the GNU General Public License as
     > # published by the Free Software Foundation, either version 2 of the
     > # License, or (at your option) any later version.
     > #
     > # RcppArmadillo is distributed in the hope that it will be useful, but
     > # WITHOUT ANY WARRANTY; without even the implied warranty of
     > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     > # General Public License for more details.
     > #
     > # You should have received a copy of the GNU General Public License
     > # along with RcppArmadillo. If not, see <http://www.gnu.org/licenses/>.
     >
     > ## doRUnit.R --- Run RUnit tests
     > ##
     > ## with credits to package fUtilities in RMetrics
     > ## which credits Gregor Gojanc's example in CRAN package 'gdata'
     > ## as per the R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
     > ## and changed further by Martin Maechler
     > ## and more changes by Murray Stokely in HistogramTools
     > ## and then used adapted in RProtoBuf
     > ## and now used in Rcpp and here
     > ##
     > ## Dirk Eddelbuettel, Feb - June 2014
     >
     > if (requireNamespace("RUnit", quietly=TRUE) &&
     + requireNamespace("RcppArmadillo", quietly=TRUE)) {
     +
     + library(RUnit)
     + library(RcppArmadillo)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name="RcppArmadillo Unit Tests",
     + dirs=system.file("unitTests", package = "RcppArmadillo"),
     + testFuncRegexp = "^[Tt]est.+")
     +
     + Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
     +
     + tests <- runTestSuite(testSuite) # run tests
     + printTextProtocol(tests) # print results
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
     + if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
     + if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
     + }
    
    
     Executing test function test.armadillo.as_vector ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.matrix.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.unsigned.as ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.ref ... done successfully.
    
    
    
     Executing test function test.as.Col ... done successfully.
    
    
    
     Executing test function test.as.Mat ... done successfully.
    
    
    
     Executing test function test.as.Row ... done successfully.
    
    
    
     Executing test function test.cxmat ... done successfully.
    
    
    
     Executing test function test.mtGlue ... done successfully.
    
    
    
     Executing test function test.mtOp ... done successfully.
    
    
    
     Executing test function test.sugar ... done successfully.
    
    
    
     Executing test function test.sugar.cplx ... done successfully.
    
    
    
     Executing test function test.wrap.Glue ... done successfully.
    
    
    
     Executing test function test.wrap.Op ... done successfully.
    
    
    
     Executing test function test.wrap.R ... done successfully.
    
    
    
     Executing test function test.Rlapack ... done successfully.
    
    
    
     Executing test function test.complex ... done successfully.
    
    
    
     Executing test function test.cube ... done successfully.
    
    
    
     Executing test function test.fastLm ... done successfully.
    
    
    
     Executing test function test.fastLm.default ... done successfully.
    
    
    
     Executing test function test.fastLm.formula ... done successfully.
    
    
    
     Executing test function test.summary.fastLm ... done successfully.
    
    
    
     Executing test function test.rmultinom ... Error in rmultinom(n, size, prob) : NA in probability vector
     Error in rmultinomC(n, size, prob) : NAs not allowed in probability
     Error in rmultinom(n, size, prob) : no positive probabilities
     Error in rmultinomC(n, size, prob) : Not enough positive probabilities
     done successfully.
    
    
    
     Executing test function test.randi ... done successfully.
    
    
    
     Executing test function test.randi.seed ... done successfully.
    
    
    
     Executing test function test.randn ... done successfully.
    
    
    
     Executing test function test.randn.seed ... done successfully.
    
    
    
     Executing test function test.randu ... done successfully.
    
    
    
     Executing test function test.randu.seed ... done successfully.
    
    
    
     Executing test function test.sample ... done successfully.
    
    
    
     Executing test function test.coo2dgt ... done successfully.
    
    
    
     Executing test function test.csc2dgc ... Timing stopped at: 0.015 0.004 0.019
     Error : $ operator not defined for this S4 class
     done successfully.
    
    
    
     Executing test function test.csr2dgr ... done successfully.
    
    
    
     Executing test function test.other ... Error : Only CSC, COO and CSR matrices from SciPy are supported.
     done successfully.
    
    
    
     Executing test function test.as.sparse ... In file included from /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadillo.h:39:0,
     from sparse.cpp:23:
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h: In instantiation of ‘Rcpp::List Rcpp::simple_triplet_matrix(const arma::SpMat<eT>&) [with T = double; Rcpp::List = Rcpp::Vector<19>]’:
     sparse.cpp:31:65: required from here
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h:43:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int cp=1, ie=0; ie < sm.n_nonzero; ie++) {
     ~~~^~~~~~~~~~~~~~
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h:44:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (; p[cp] <= ie && cp < sm.n_cols; cp++)
     ~~~^~~~~~~~~~~
     done successfully.
    
    
    
     Executing test function test.sparse.addition ... done successfully.
    
    
    
     Executing test function test.sparse.fromTriplet ... done successfully.
    
    
    
     Executing test function test.sparse.iterators ... done successfully.
    
    
    
     Executing test function test.sparse.list ... done successfully.
    
    
    
     Executing test function test.sparse.multiplication ... done successfully.
    
    
    
     Executing test function test.sparse.sqrt ... done successfully.
    
    
    
     Executing test function test.sparse.square ... done successfully.
    
    
    
     Executing test function test.sparse.transpose ... done successfully.
    
    
    
     Executing test function test.speye ... done successfully.
    
    
    
     Executing test function test.as.ddi2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgc2dgc ... dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     done successfully.
    
    
    
     Executing test function test.as.dgr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgt2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dst2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtt2dgc ... done successfully.
    
    
    
     Executing test function test.as.ind2dgc ... done successfully.
    
    
    
     Executing test function test.as.p2dgc ... done successfully.
    
    
    
     Executing test function test.stop ... Error in asSpMat(lm) : lgCMatrix is not supported.
     In addition: Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'slam'
     Error in asSpMat(L) : lgTMatrix is not supported.
     dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     Error in asSpMat(nm) : ngCMatrix is not supported.
     Error in asSpMat(ngt) : ngTMatrix is not supported.
     Error in asSpMat(nM) : ntTMatrix is not supported.
     Error in asSpMat(nsc) : nsCMatrix is not supported.
     Error in asSpMat(ldi) : ldiMatrix is not supported.
     done successfully.
    
     RUNIT TEST PROTOCOL -- Wed Jun 13 10:59:26 2018
     ***********************************************
     Number of test functions: 65
     Number of errors: 1
     Number of failures: 0
    
    
     1 Test Suite :
     RcppArmadillo Unit Tests - 65 test functions, 1 error, 0 failures
     ERROR in test.csc2dgc: Error : $ operator not defined for this S4 class
    
    
    
     Details
     ***************************
     Test Suite: RcppArmadillo Unit Tests
     Test function regexp: ^[Tt]est.+
     Test file regexp: ^runit.+\.[rR]$
     Involved directory:
     /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.RcppArmadillo.R
     test.armadillo.as_vector: (6 checks) ... OK (0 seconds)
     test.armadillo.mat.const: (1 checks) ... OK (0 seconds)
     test.armadillo.mat.const.ref: (1 checks) ... OK (0 seconds)
     test.armadillo.mat.plain: (1 checks) ... OK (0 seconds)
     test.armadillo.mat.ref: (1 checks) ... OK (0 seconds)
     test.armadillo.sugar.ctor: (1 checks) ... OK (0 seconds)
     test.armadillo.sugar.matrix.ctor: (1 checks) ... OK (0 seconds)
     test.armadillo.unsigned.as: (8 checks) ... OK (0 seconds)
     test.armadillo.vec.const: (1 checks) ... OK (0 seconds)
     test.armadillo.vec.const.ref: (1 checks) ... OK (0 seconds)
     test.armadillo.vec.plain: (1 checks) ... OK (0 seconds)
     test.armadillo.vec.ref: (1 checks) ... OK (0 seconds)
     test.as.Col: (1 checks) ... OK (0 seconds)
     test.as.Mat: (1 checks) ... OK (0 seconds)
     test.as.Row: (1 checks) ... OK (0 seconds)
     test.cxmat: (1 checks) ... OK (0 seconds)
     test.mtGlue: (1 checks) ... OK (0 seconds)
     test.mtOp: (1 checks) ... OK (0 seconds)
     test.sugar: (1 checks) ... OK (0 seconds)
     test.sugar.cplx: (1 checks) ... OK (0 seconds)
     test.wrap.Glue: (1 checks) ... OK (0 seconds)
     test.wrap.Op: (1 checks) ... OK (0 seconds)
     test.wrap.R: (10 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.Rlapack.R
     test.Rlapack: (6 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.complex.R
     test.complex: (11 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.cube.R
     test.cube: (18 checks) ... OK (0.12 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.fastLm.R
     test.fastLm: (3 checks) ... OK (0.02 seconds)
     test.fastLm.default: (5 checks) ... OK (0.01 seconds)
     test.fastLm.formula: (5 checks) ... OK (0.01 seconds)
     test.summary.fastLm: (12 checks) ... OK (0.04 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.rmultinom.R
     test.rmultinom: (9 checks) ... OK (0.01 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.rng.R
     test.randi: (2 checks) ... OK (0 seconds)
     test.randi.seed: (1 checks) ... OK (0 seconds)
     test.randn: (3 checks) ... OK (0 seconds)
     test.randn.seed: (1 checks) ... OK (0.02 seconds)
     test.randu: (2 checks) ... OK (0 seconds)
     test.randu.seed: (1 checks) ... OK (0.02 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.sample.R
     test.sample: (21 checks) ... OK (0.11 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.scipy2r.R
     test.coo2dgt: (1 checks) ... OK (0.05 seconds)
     test.csc2dgc: ERROR !!
     Error : $ operator not defined for this S4 class
     test.csr2dgr: (1 checks) ... OK (0.04 seconds)
     test.other: (1 checks) ... OK (0.02 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.sparse.R
     test.as.sparse: (1 checks) ... OK (0 seconds)
     test.sparse.addition: (1 checks) ... OK (0.01 seconds)
     test.sparse.fromTriplet: (1 checks) ... OK (0.01 seconds)
     test.sparse.iterators: (1 checks) ... OK (0.02 seconds)
     test.sparse.list: (1 checks) ... OK (0 seconds)
     test.sparse.multiplication: (1 checks) ... OK (0 seconds)
     test.sparse.sqrt: (1 checks) ... OK (0 seconds)
     test.sparse.square: (1 checks) ... OK (0 seconds)
     test.sparse.transpose: (1 checks) ... OK (0 seconds)
     test.speye: (3 checks) ... OK (0.02 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/unitTests/runit.sparseConversion.R
     test.as.ddi2dgc: (8 checks) ... OK (0.1 seconds)
     test.as.dgc2dgc: (14 checks) ... OK (0.06 seconds)
     test.as.dgr2dgc: (5 checks) ... OK (0.03 seconds)
     test.as.dgt2dgc: (18 checks) ... OK (0.17 seconds)
     test.as.dsc2dgc: (8 checks) ... OK (0.06 seconds)
     test.as.dsr2dgc: (4 checks) ... OK (0.04 seconds)
     test.as.dst2dgc: (2 checks) ... OK (0.02 seconds)
     test.as.dtc2dgc: (5 checks) ... OK (0.06 seconds)
     test.as.dtr2dgc: (4 checks) ... OK (0.05 seconds)
     test.as.dtt2dgc: (4 checks) ... OK (0.06 seconds)
     test.as.ind2dgc: (9 checks) ... OK (0.11 seconds)
     test.as.p2dgc: (5 checks) ... OK (0.04 seconds)
     test.stop: (7 checks) ... OK (0.05 seconds)
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [132s/133s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Last 13 lines of output:
     test.as.dgr2dgc: (5 checks) ... OK (0.01 seconds)
     test.as.dgt2dgc: (18 checks) ... OK (0.09 seconds)
     test.as.dsc2dgc: (8 checks) ... OK (0.03 seconds)
     test.as.dsr2dgc: (4 checks) ... OK (0.03 seconds)
     test.as.dst2dgc: (2 checks) ... OK (0.01 seconds)
     test.as.dtc2dgc: (5 checks) ... OK (0.02 seconds)
     test.as.dtr2dgc: (4 checks) ... OK (0.02 seconds)
     test.as.dtt2dgc: (4 checks) ... OK (0.03 seconds)
     test.as.ind2dgc: (9 checks) ... OK (0.05 seconds)
     test.as.p2dgc: (5 checks) ... OK (0.02 seconds)
     test.as.stm2dgc: (1 checks) ... OK (0 seconds)
     test.as.stm2stm: (1 checks) ... OK (0 seconds)
     test.stop: (7 checks) ... OK (0.04 seconds)
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.8.500.0
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘RcppArmadillo-unitTests.Rnw’
     ...
    
    > if (err$nFail > 0) stop(sprintf("unit test problems: %d failures",
    + err$nFail))
    
    > if (err$nErr > 0) stop(sprintf("unit test problems: %d errors",
    + err$nErr))
    
     When sourcing ‘RcppArmadillo-unitTests.R’:
    Error: unit test problems: 1 errors
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.8.500.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in rmultinom(n, size, prob) : NA in probability vector
    Error in rmultinomC(n, size, prob) : c++ exception (unknown reason)
    Error in rmultinom(n, size, prob) : no positive probabilities
    Error in rmultinomC(n, size, prob) : c++ exception (unknown reason)
    Timing stopped at: 0.009 0 0.009
    Error : $ operator not defined for this S4 class
    Error : Only CSC, COO and CSR matrices from SciPy are supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(lm) : lgCMatrix is not supported.
    Error in asSpMat(L) : lgTMatrix is not supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(nm) : ngCMatrix is not supported.
    Error in asSpMat(ngt) : ngTMatrix is not supported.
    Error in asSpMat(nM) : ntTMatrix is not supported.
    Error in asSpMat(nsc) : nsCMatrix is not supported.
    Error in asSpMat(ldi) : ldiMatrix is not supported.
    
    Error: processing vignette 'RcppArmadillo-unitTests.Rnw' failed with diagnostics:
     chunk 2 (label = unitTesting)
    Error in eval(expr, .GlobalEnv) : unit test problems: 1 errors
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.8.500.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [100s/101s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Last 13 lines of output:
     test.as.dgr2dgc: (5 checks) ... OK (0.01 seconds)
     test.as.dgt2dgc: (18 checks) ... OK (0.11 seconds)
     test.as.dsc2dgc: (8 checks) ... OK (0.16 seconds)
     test.as.dsr2dgc: (4 checks) ... OK (0.03 seconds)
     test.as.dst2dgc: (2 checks) ... OK (0.01 seconds)
     test.as.dtc2dgc: (5 checks) ... OK (0.07 seconds)
     test.as.dtr2dgc: (4 checks) ... OK (0.02 seconds)
     test.as.dtt2dgc: (4 checks) ... OK (0.04 seconds)
     test.as.ind2dgc: (9 checks) ... OK (0.05 seconds)
     test.as.p2dgc: (5 checks) ... OK (0.02 seconds)
     test.as.stm2dgc: (1 checks) ... OK (0 seconds)
     test.as.stm2stm: (1 checks) ... OK (0.02 seconds)
     test.stop: (7 checks) ... OK (0.05 seconds)
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 0.8.500.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Timing stopped at: 0.009 0 0.009
    Error in spmat$getformat : $ operator not defined for this S4 class
    Error : Only CSC, COO and CSR matrices from SciPy are supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(lm) : lgCMatrix is not supported.
    Error in asSpMat(L) : lgTMatrix is not supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(nm) : ngCMatrix is not supported.
    Error in asSpMat(ngt) : ngTMatrix is not supported.
    Error in asSpMat(nM) : ntTMatrix is not supported.
    Error in asSpMat(nsc) : nsCMatrix is not supported.
    Error in asSpMat(ldi) : ldiMatrix is not supported.
    
    Error: processing vignette 'RcppArmadillo-unitTests.Rnw' failed with diagnostics:
     chunk 2 (label = unitTesting)
    Error in eval(expr, .GlobalEnv) : unit test problems: 1 errors
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package RcppBDT

Current CRAN status: NOTE: 8, OK: 4

Version: 0.2.3
Check: compiled code
Result: NOTE
    File ‘RcppBDT/libs/RcppBDT.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.3
Check: installed package size
Result: NOTE
     installed size is 8.8Mb
     sub-directories of 1Mb or more:
     libs 8.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppCCTZ

Current CRAN status: ERROR: 1, OK: 11

Version: 0.2.3
Check: examples
Result: ERROR
    Running examples in ‘RcppCCTZ-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: toTz
    > ### Title: Shift datetime object from one timezone to another
    > ### Aliases: toTz
    >
    > ### ** Examples
    >
    > toTz(Sys.time(), "America/New_York", "Europe/London")
    Error in toTz(Sys.time(), "America/New_York", "Europe/London") :
     Bad 'from' timezone
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘simpleTests.R’
    Running the tests in ‘tests/simpleTests.R’ failed.
    Complete output:
     >
     > library(RcppCCTZ)
     >
     > ord <- "America/Chicago"
     > lax <- "America/Los_Angeles"
     > lga <- "America/New_York"
     > htr <- "Europe/London"
     > utc <- "UTC"
     >
     > now <- ISOdatetime(2016, 11, 29, 12, 00, 00, tz="UTC")
     >
     > format(toTz(now, utc, lax), tz=lax)
     Error in toTz(now, utc, lax) : Bad 'to' timezone
     Calls: format -> toTz
     Execution halted
Flavor: r-patched-solaris-x86

Package RcppClassic

Current CRAN status: OK: 12

Package RcppClassicExamples

Current CRAN status: ERROR: 1, OK: 11

Version: 0.1.2
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-osx-x86_64

Package RcppCNPy

Current CRAN status: WARN: 6, OK: 6

Version: 0.2.9
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    running: python -c 'import numpy as np
    
    mat = np.arange(12).reshape(3,4) * 1.1
    np.save("fmat.npy", mat)
    print mat
    
    vec = np.arange(5) * 1.1
    np.save("fvec.npy", vec)
    print vec'
    running: python -c 'import numpy as np
    m = np.load("randmat.npy")
    print m
    v = np.load("simplevec.npy")
    print v'
    ! LaTeX Error: Lonely \item--perhaps a missing list environment.
    
    Error: processing vignette ‘RcppCNPy-intro.Rmd’ failed with diagnostics:
    Failed to compile RcppCNPy-intro.tex. See RcppCNPy-intro.log for more info.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package RcppDE

Current CRAN status: OK: 12

Additional issues

clang-UBSAN

Package RcppEigen

Current CRAN status: NOTE: 7, OK: 5

Version: 0.3.3.4.0
Check: installed package size
Result: NOTE
     installed size is 32.1Mb
     sub-directories of 1Mb or more:
     include 7.9Mb
     libs 23.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RcppExamples

Current CRAN status: NOTE: 6, OK: 6

Version: 0.1.8
Check: compiled code
Result: NOTE
    File ‘RcppExamples/libs/RcppExamples.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package RcppGetconf

Current CRAN status: ERROR: 1, NOTE: 6, OK: 2

Version: 0.0.2
Check: compiled code
Result: NOTE
    File ‘RcppGetconf/libs/RcppGetconf.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0.2
Check: examples
Result: ERROR
    Running examples in ‘RcppGetconf-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: getAll
    > ### Title: Return all System Configuration Settings
    > ### Aliases: getAll
    >
    > ### ** Examples
    >
    > head(getAll(), 30)
    Error in getAll() : Memory allocation error
    Calls: head -> getAll
    Execution halted
Flavor: r-patched-solaris-x86

Package RcppGSL

Current CRAN status: OK: 12

Package RcppMsgPack

Current CRAN status: ERROR: 1, NOTE: 6, OK: 5

Version: 0.2.2
Check: installed package size
Result: NOTE
     installed size is 10.1Mb
     sub-directories of 1Mb or more:
     include 7.0Mb
     libs 2.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.2
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-patched-solaris-x86

Package RcppQuantuccia

Current CRAN status: NOTE: 12

Version: 0.0.2
Check: pragmas in C/C++ headers and code
Result: NOTE
    Files which contain pragma(s) suppressing diagnostics:
     ‘inst/include/ql/math/distributions/normaldistribution.hpp’
     ‘inst/include/ql/math/matrix.hpp’
     ‘inst/include/ql/math/optimization/levenbergmarquardt.hpp’
     ‘inst/include/ql/math/statistics/incrementalstatistics.hpp’
     ‘inst/include/ql/time/date.hpp’ ‘inst/include/ql/time/imm.hpp’
     ‘inst/include/ql/utilities/dataparsers.hpp’
     ‘inst/include/ql/utilities/null.hpp’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.0.2
Check: installed package size
Result: NOTE
     installed size is 23.1Mb
     sub-directories of 1Mb or more:
     include 8.9Mb
     libs 14.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RcppRedis

Current CRAN status: ERROR: 2, OK: 9

Version: 0.1.8
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppSMC

Current CRAN status: NOTE: 1, OK: 11

Version: 0.2.1
Check: installed package size
Result: NOTE
     installed size is 6.1Mb
     sub-directories of 1Mb or more:
     libs 5.8Mb
Flavor: r-devel-linux-x86_64-fedora-clang

Package RcppStreams

Current CRAN status: NOTE: 8, OK: 4

Additional issues

clang-ASAN

Version: 0.1.1
Check: compiled code
Result: NOTE
    File ‘RcppStreams/libs/RcppStreams.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.1
Check: installed package size
Result: NOTE
     installed size is 7.6Mb
     sub-directories of 1Mb or more:
     libs 6.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppTOML

Current CRAN status: OK: 12

Package RcppXts

Current CRAN status: NOTE: 12

Version: 0.0.4
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.0.4
Check: compiled code
Result: NOTE
    File ‘RcppXts/libs/RcppXts.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package RcppZiggurat

Current CRAN status: OK: 12

Package RDieHarder

Current CRAN status: ERROR: 3, OK: 4

Version: 0.1.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-windows-ix86+x86_64

Version: 0.1.4
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package rfoaas

Current CRAN status: OK: 12

Package RInside

Current CRAN status: NOTE: 12

Version: 0.2.14
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    File ‘RInside/libs/RInside.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.14
Check: installed package size
Result: NOTE
     installed size is 8.8Mb
     sub-directories of 1Mb or more:
     lib 3.5Mb
     libs 4.8Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.14
Check: compiled code
Result: NOTE
    File 'RInside/libs/i386/RInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/x64/RInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/i386/libRInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/x64/libRInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/i386/RInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/x64/RInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/i386/libRInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/x64/libRInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.14
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-solaris-x86

Version: 0.2.14
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64

Version: 0.2.14
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Package rmsfact

Current CRAN status: OK: 12

Package RProtoBuf

Current CRAN status: NOTE: 6, OK: 5

Version: 0.4.11
Check: installed package size
Result: NOTE
     installed size is 9.4Mb
     sub-directories of 1Mb or more:
     doc 1.1Mb
     libs 7.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RPushbullet

Current CRAN status: OK: 12

Package RQuantLib

Current CRAN status: ERROR: 2, WARN: 1, OK: 4

Version: 0.4.4
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.4.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:824:13: warning: this decimal constant is unsigned only in ISO C90
     d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:842:13: warning: this decimal constant is unsigned only in ISO C90
     d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomlosslatentmodel.hpp:84:13: warning: this decimal constant is unsigned only in ISO C90
     d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:824:13: warning: this decimal constant is unsigned only in ISO C90
     d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:842:13: warning: this decimal constant is unsigned only in ISO C90
     d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomlosslatentmodel.hpp:84:13: warning: this decimal constant is unsigned only in ISO C90
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.4.2
Check: installed package size
Result: NOTE
     installed size is 23.2Mb
     sub-directories of 1Mb or more:
     libs 22.8Mb
Flavor: r-oldrel-windows-ix86+x86_64

Package RVowpalWabbit

Current CRAN status: ERROR: 2, NOTE: 1, OK: 5

Additional issues

clang-UBSAN gcc-UBSAN

Version: 0.0.12
Check: installed package size
Result: NOTE
     installed size is 24.3Mb
     sub-directories of 1Mb or more:
     libs 4.6Mb
     test 19.6Mb
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.0.12
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package sanitizers

Current CRAN status: NOTE: 6, OK: 6

Version: 0.1.0
Check: compiled code
Result: NOTE
    File ‘sanitizers/libs/sanitizers.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package tint

Current CRAN status: NOTE: 7, OK: 5

Version: 0.1.0
Check: installed package size
Result: NOTE
     installed size is 5.2Mb
     sub-directories of 1Mb or more:
     doc 3.7Mb
     rmarkdown 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package x13binary

Current CRAN status: NOTE: 3, OK: 9

Version: 1.1.39-1
Check: installed package size
Result: NOTE
     installed size is 5.6Mb
     sub-directories of 1Mb or more:
     bin 5.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64