Last updated on 2018-04-25 23:55:32 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| anytime | 1 | 11 | ||
| AsioHeaders | 12 | |||
| BH | 8 | 4 | ||
| digest | 1 | 11 | ||
| drat | 12 | |||
| gaussfacts | 12 | |||
| gcbd | 1 | 8 | ||
| gettz | 6 | 6 | ||
| gunsales | 1 | 11 | ||
| inline | 12 | |||
| linl | 12 | |||
| littler | 6 | |||
| nanotime | 1 | 11 | ||
| pinp | 12 | |||
| pkgKitten | 12 | |||
| prrd | 12 | |||
| random | 1 | 11 | ||
| RApiDatetime | 12 | |||
| RApiSerialize | 12 | |||
| Rblpapi | 7 | 4 | ||
| Rcpp | 12 | |||
| RcppAnnoy | 12 | |||
| RcppAPT | 2 | 4 | ||
| RcppArmadillo | 1 | 1 | 6 | 4 |
| RcppBDT | 8 | 4 | ||
| RcppCCTZ | 1 | 11 | ||
| RcppClassic | 12 | |||
| RcppClassicExamples | 1 | 11 | ||
| RcppCNPy | 12 | |||
| RcppDE | 6 | 6 | ||
| RcppEigen | 8 | 4 | ||
| RcppExamples | 6 | 6 | ||
| RcppGetconf | 1 | 6 | 2 | |
| RcppGSL | 4 | 3 | 5 | |
| RcppMsgPack | 1 | 7 | 4 | |
| RcppQuantuccia | 12 | |||
| RcppRedis | 2 | 9 | ||
| RcppSMC | 2 | 10 | ||
| RcppStreams | 8 | 4 | ||
| RcppTOML | 12 | |||
| RcppXts | 12 | |||
| RcppZiggurat | 12 | |||
| RDieHarder | 4 | 4 | ||
| rfoaas | 12 | |||
| RInside | 12 | |||
| rmsfact | 12 | |||
| RProtoBuf | 7 | 4 | ||
| RPushbullet | 12 | |||
| RQuantLib | 2 | 1 | 4 | |
| RVowpalWabbit | 2 | 2 | 4 | |
| sanitizers | 6 | 6 | ||
| tint | 8 | 4 | ||
| x13binary | 4 | 8 |
Current CRAN status: ERROR: 1, OK: 11
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘allFormats.R’
Running ‘bulkTest.R’
Running ‘gh_issue_12.R’
Running ‘gh_issue_33.R’
Running ‘gh_issue_5.R’
Running ‘gh_issue_56.R’
Running ‘gh_issues_36_51.R’
Running ‘r_anytime.R’
Running ‘simpleTests.R’
Running ‘utilities.R’
Running ‘validate.R’
Running the tests in ‘tests/allFormats.R’ failed.
Complete output:
> options(digits.secs=6, width=70)
>
> library(anytime)
>
> ref <- format(as.POSIXct(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"),
+ "%Y-%m-%d %H:%M:%0S"))
Warning messages:
1: In strptime(xx, f, tz = tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
2: In as.POSIXct.POSIXlt(x) : unknown timezone '%Y-%m-%d %H:%M:%0S'
3: In strptime(x, f, tz = tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
4: In as.POSIXct.POSIXlt(as.POSIXlt(x, tz, ...), tz, ...) :
unknown timezone '%Y-%m-%d %H:%M:%0S'
5: In as.POSIXlt.POSIXct(x, tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
>
>
> stopifnot(ref == format(anytime(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"))))
Error: ref == format(anytime(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"))) are not all TRUE
Execution halted
Running the tests in ‘tests/bulkTest.R’ failed.
Complete output:
>
> ## we still have weird issues with some timezones so some testing needed
> ## and while Boost Date_Time instantiates the formats relative to a locale
> ## it remains tricky to change TZ on the fly
>
> library(anytime)
>
> verbose <- FALSE
>
> tzvec <- c( # courtesy of CCTZ
+ "Africa/Abidjan",
+ "Africa/Accra",
+ "Africa/Addis_Ababa",
+ "Africa/Algiers",
+ "Africa/Asmara",
+ "Africa/Asmera",
+ "Africa/Bamako",
+ "Africa/Bangui",
+ "Africa/Banjul",
+ "Africa/Bissau",
+ "Africa/Blantyre",
+ "Africa/Brazzaville",
+ "Africa/Bujumbura",
+ "Africa/Cairo",
+ "Africa/Casablanca",
+ "Africa/Ceuta",
+ "Africa/Conakry",
+ "Africa/Dakar",
+ "Africa/Dar_es_Salaam",
+ "Africa/Djibouti",
+ "Africa/Douala",
+ "Africa/El_Aaiun",
+ "Africa/Freetown",
+ "Africa/Gaborone",
+ "Africa/Harare",
+ "Africa/Johannesburg",
+ "Africa/Juba",
+ "Africa/Kampala",
+ "Africa/Khartoum",
+ "Africa/Kigali",
+ "Africa/Kinshasa",
+ "Africa/Lagos",
+ "Africa/Libreville",
+ "Africa/Lome",
+ "Africa/Luanda",
+ "Africa/Lubumbashi",
+ "Africa/Lusaka",
+ "Africa/Malabo",
+ "Africa/Maputo",
+ "Africa/Maseru",
+ "Africa/Mbabane",
+ "Africa/Mogadishu",
+ "Africa/Monrovia",
+ "Africa/Nairobi",
+ "Africa/Ndjamena",
+ "Africa/Niamey",
+ "Africa/Nouakchott",
+ "Africa/Ouagadougou",
+ "Africa/Porto-Novo",
+ "Africa/Sao_Tome",
+ "Africa/Timbuktu",
+ "Africa/Tripoli",
+ "Africa/Tunis",
+ "Africa/Windhoek",
+ "America/Adak",
+ "America/Anchorage",
+ "America/Anguilla",
+ "America/Antigua",
+ "America/Araguaina",
+ "America/Argentina/Buenos_Aires",
+ "America/Argentina/Catamarca",
+ "America/Argentina/ComodRivadavia",
+ "America/Argentina/Cordoba",
+ "America/Argentina/Jujuy",
+ "America/Argentina/La_Rioja",
+ "America/Argentina/Mendoza",
+ "America/Argentina/Rio_Gallegos",
+ "America/Argentina/Salta",
+ "America/Argentina/San_Juan",
+ "America/Argentina/San_Luis",
+ "America/Argentina/Tucuman",
+ "America/Argentina/Ushuaia",
+ "America/Aruba",
+ "America/Asuncion",
+ "America/Atikokan",
+ "America/Atka",
+ "America/Bahia",
+ "America/Bahia_Banderas",
+ "America/Barbados",
+ "America/Belem",
+ "America/Belize",
+ "America/Blanc-Sablon",
+ "America/Boa_Vista",
+ "America/Bogota",
+ "America/Boise",
+ "America/Buenos_Aires",
+ "America/Cambridge_Bay",
+ "America/Campo_Grande",
+ "America/Cancun",
+ "America/Caracas",
+ "America/Catamarca",
+ "America/Cayenne",
+ "America/Cayman",
+ "America/Chicago",
+ "America/Chihuahua",
+ "America/Coral_Harbour",
+ "America/Cordoba",
+ "America/Costa_Rica",
+ "America/Creston",
+ "America/Cuiaba",
+ "America/Curacao",
+ "America/Danmarkshavn",
+ "America/Dawson",
+ "America/Dawson_Creek",
+ "America/Denver",
+ "America/Detroit",
+ "America/Dominica",
+ "America/Edmonton",
+ "America/Eirunepe",
+ "America/El_Salvador",
+ "America/Ensenada",
+ "America/Fort_Wayne",
+ "America/Fortaleza",
+ "America/Glace_Bay",
+ "America/Godthab",
+ "America/Goose_Bay",
+ "America/Grand_Turk",
+ "America/Grenada",
+ "America/Guadeloupe",
+ "America/Guatemala",
+ "America/Guayaquil",
+ "America/Guyana",
+ "America/Halifax",
+ "America/Havana",
+ "America/Hermosillo",
+ "America/Indiana/Indianapolis",
+ "America/Indiana/Knox",
+ "America/Indiana/Marengo",
+ "America/Indiana/Petersburg",
+ "America/Indiana/Tell_City",
+ "America/Indiana/Vevay",
+ "America/Indiana/Vincennes",
+ "America/Indiana/Winamac",
+ "America/Indianapolis",
+ "America/Inuvik",
+ "America/Iqaluit",
+ "America/Jamaica",
+ "America/Jujuy",
+ "America/Juneau",
+ "America/Kentucky/Louisville",
+ "America/Kentucky/Monticello",
+ "America/Knox_IN",
+ "America/Kralendijk",
+ "America/La_Paz",
+ "America/Lima",
+ "America/Los_Angeles",
+ "America/Louisville",
+ "America/Lower_Princes",
+ "America/Maceio",
+ "America/Managua",
+ "America/Manaus",
+ "America/Marigot",
+ "America/Martinique",
+ "America/Matamoros",
+ "America/Mazatlan",
+ "America/Mendoza",
+ "America/Menominee",
+ "America/Merida",
+ "America/Metlakatla",
+ "America/Mexico_City",
+ "America/Miquelon",
+ "America/Moncton",
+ "America/Monterrey",
+ "America/Montevideo",
+ "America/Montreal",
+ "America/Montserrat",
+ "America/Nassau",
+ "America/New_York",
+ "America/Nipigon",
+ "America/Nome",
+ "America/Noronha",
+ "America/North_Dakota/Beulah",
+ "America/North_Dakota/Center",
+ "America/North_Dakota/New_Salem",
+ "America/Ojinaga",
+ "America/Panama",
+ "America/Pangnirtung",
+ "America/Paramaribo",
+ "America/Phoenix",
+ "America/Port-au-Prince",
+ "America/Port_of_Spain",
+ "America/Porto_Acre",
+ "America/Porto_Velho",
+ "America/Puerto_Rico",
+ "America/Rainy_River",
+ "America/Rankin_Inlet",
+ "America/Recife",
+ "America/Regina",
+ "America/Resolute",
+ "America/Rio_Branco",
+ "America/Rosario",
+ "America/Santa_Isabel",
+ "America/Santarem",
+ "America/Santiago",
+ "America/Santo_Domingo",
+ "America/Sao_Paulo",
+ "America/Scoresbysund",
+ "America/Shiprock",
+ "America/Sitka",
+ "America/St_Barthelemy",
+ "America/St_Johns",
+ "America/St_Kitts",
+ "America/St_Lucia",
+ "America/St_Thomas",
+ "America/St_Vincent",
+ "America/Swift_Current",
+ "America/Tegucigalpa",
+ "America/Thule",
+ "America/Thunder_Bay",
+ "America/Tijuana",
+ "America/Toronto",
+ "America/Tortola",
+ "America/Vancouver",
+ "America/Virgin",
+ "America/Whitehorse",
+ "America/Winnipeg",
+ "America/Yakutat",
+ "America/Yellowknife",
+ "Antarctica/Casey",
+ "Antarctica/Davis",
+ "Antarctica/DumontDUrville",
+ "Antarctica/Macquarie",
+ "Antarctica/Mawson",
+ "Antarctica/McMurdo",
+ "Antarctica/Palmer",
+ "Antarctica/Rothera",
+ "Antarctica/South_Pole",
+ "Antarctica/Syowa",
+ "Antarctica/Troll",
+ "Antarctica/Vostok",
+ "Arctic/Longyearbyen",
+ "Asia/Aden",
+ "Asia/Almaty",
+ "Asia/Amman",
+ "Asia/Anadyr",
+ "Asia/Aqtau",
+ "Asia/Aqtobe",
+ "Asia/Ashgabat",
+ "Asia/Ashkhabad",
+ "Asia/Baghdad",
+ "Asia/Bahrain",
+ "Asia/Baku",
+ "Asia/Bangkok",
+ "Asia/Beirut",
+ "Asia/Bishkek",
+ "Asia/Brunei",
+ "Asia/Calcutta",
+ "Asia/Chita",
+ "Asia/Choibalsan",
+ "Asia/Chongqing",
+ "Asia/Chungking",
+ "Asia/Colombo",
+ "Asia/Dacca",
+ "Asia/Damascus",
+ "Asia/Dhaka",
+ "Asia/Dili",
+ "Asia/Dubai",
+ "Asia/Dushanbe",
+ "Asia/Gaza",
+ "Asia/Harbin",
+ "Asia/Hebron",
+ "Asia/Ho_Chi_Minh",
+ "Asia/Hong_Kong",
+ "Asia/Hovd",
+ "Asia/Irkutsk",
+ "Asia/Istanbul",
+ "Asia/Jakarta",
+ "Asia/Jayapura",
+ "Asia/Jerusalem",
+ "Asia/Kabul",
+ "Asia/Kamchatka",
+ "Asia/Karachi",
+ "Asia/Kashgar",
+ "Asia/Kathmandu",
+ "Asia/Katmandu",
+ "Asia/Khandyga",
+ "Asia/Kolkata",
+ "Asia/Krasnoyarsk",
+ "Asia/Kuala_Lumpur",
+ "Asia/Kuching",
+ "Asia/Kuwait",
+ "Asia/Macao",
+ "Asia/Macau",
+ "Asia/Magadan",
+ "Asia/Makassar",
+ "Asia/Manila",
+ "Asia/Muscat",
+ "Asia/Nicosia",
+ "Asia/Novokuznetsk",
+ "Asia/Novosibirsk",
+ "Asia/Omsk",
+ "Asia/Oral",
+ "Asia/Phnom_Penh",
+ "Asia/Pontianak",
+ "Asia/Pyongyang",
+ "Asia/Qatar",
+ "Asia/Qyzylorda",
+ "Asia/Rangoon",
+ "Asia/Riyadh",
+ "Asia/Saigon",
+ "Asia/Sakhalin",
+ "Asia/Samarkand",
+ "Asia/Seoul",
+ "Asia/Shanghai",
+ "Asia/Singapore",
+ "Asia/Srednekolymsk",
+ "Asia/Taipei",
+ "Asia/Tashkent",
+ "Asia/Tbilisi",
+ "Asia/Tehran",
+ "Asia/Tel_Aviv",
+ "Asia/Thimbu",
+ "Asia/Thimphu",
+ "Asia/Tokyo",
+ "Asia/Ujung_Pandang",
+ "Asia/Ulaanbaatar",
+ "Asia/Ulan_Bator",
+ "Asia/Urumqi",
+ "Asia/Ust-Nera",
+ "Asia/Vientiane",
+ "Asia/Vladivostok",
+ "Asia/Yakutsk",
+ "Asia/Yekaterinburg",
+ "Asia/Yerevan",
+ "Atlantic/Azores",
+ "Atlantic/Bermuda",
+ "Atlantic/Canary",
+ "Atlantic/Cape_Verde",
+ "Atlantic/Faeroe",
+ "Atlantic/Faroe",
+ "Atlantic/Jan_Mayen",
+ "Atlantic/Madeira",
+ "Atlantic/Reykjavik",
+ "Atlantic/South_Georgia",
+ "Atlantic/St_Helena",
+ "Atlantic/Stanley",
+ "Australia/ACT",
+ "Australia/Adelaide",
+ "Australia/Brisbane",
+ "Australia/Broken_Hill",
+ "Australia/Canberra",
+ "Australia/Currie",
+ "Australia/Darwin",
+ "Australia/Eucla",
+ "Australia/Hobart",
+ "Australia/LHI",
+ "Australia/Lindeman",
+ "Australia/Lord_Howe",
+ "Australia/Melbourne",
+ "Australia/NSW",
+ "Australia/North",
+ "Australia/Perth",
+ "Australia/Queensland",
+ "Australia/South",
+ "Australia/Sydney",
+ "Australia/Tasmania",
+ "Australia/Victoria",
+ "Australia/West",
+ "Australia/Yancowinna",
+ "Brazil/Acre",
+ "Brazil/DeNoronha",
+ "Brazil/East",
+ "Brazil/West",
+ "CET",
+ "CST6CDT",
+ "Canada/Atlantic",
+ "Canada/Central",
+ "Canada/East-Saskatchewan",
+ "Canada/Eastern",
+ "Canada/Mountain",
+ "Canada/Newfoundland",
+ "Canada/Pacific",
+ "Canada/Saskatchewan",
+ "Canada/Yukon",
+ "Chile/Continental",
+ "Chile/EasterIsland",
+ "Cuba",
+ "EET",
+ "EST",
+ "EST5EDT",
+ "Egypt",
+ "Eire",
+ "Etc/GMT",
+ "Etc/GMT+0",
+ "Etc/GMT+1",
+ "Etc/GMT+10",
+ "Etc/GMT+11",
+ "Etc/GMT+12",
+ "Etc/GMT+2",
+ "Etc/GMT+3",
+ "Etc/GMT+4",
+ "Etc/GMT+5",
+ "Etc/GMT+6",
+ "Etc/GMT+7",
+ "Etc/GMT+8",
+ "Etc/GMT+9",
+ "Etc/GMT-0",
+ "Etc/GMT-1",
+ "Etc/GMT-10",
+ "Etc/GMT-11",
+ "Etc/GMT-12",
+ "Etc/GMT-13",
+ "Etc/GMT-14",
+ "Etc/GMT-2",
+ "Etc/GMT-3",
+ "Etc/GMT-4",
+ "Etc/GMT-5",
+ "Etc/GMT-6",
+ "Etc/GMT-7",
+ "Etc/GMT-8",
+ "Etc/GMT-9",
+ "Etc/GMT0",
+ "Etc/Greenwich",
+ "Etc/UCT",
+ "Etc/UTC",
+ "Etc/Universal",
+ "Etc/Zulu",
+ "Europe/Amsterdam",
+ "Europe/Andorra",
+ "Europe/Athens",
+ "Europe/Belfast",
+ "Europe/Belgrade",
+ "Europe/Berlin",
+ "Europe/Bratislava",
+ "Europe/Brussels",
+ "Europe/Bucharest",
+ "Europe/Budapest",
+ "Europe/Busingen",
+ "Europe/Chisinau",
+ "Europe/Copenhagen",
+ "Europe/Dublin",
+ "Europe/Gibraltar",
+ "Europe/Guernsey",
+ "Europe/Helsinki",
+ "Europe/Isle_of_Man",
+ "Europe/Istanbul",
+ "Europe/Jersey",
+ "Europe/Kaliningrad",
+ "Europe/Kiev",
+ "Europe/Lisbon",
+ "Europe/Ljubljana",
+ "Europe/London",
+ "Europe/Luxembourg",
+ "Europe/Madrid",
+ "Europe/Malta",
+ "Europe/Mariehamn",
+ "Europe/Minsk",
+ "Europe/Monaco",
+ "Europe/Moscow",
+ "Europe/Nicosia",
+ "Europe/Oslo",
+ "Europe/Paris",
+ "Europe/Podgorica",
+ "Europe/Prague",
+ "Europe/Riga",
+ "Europe/Rome",
+ "Europe/Samara",
+ "Europe/San_Marino",
+ "Europe/Sarajevo",
+ "Europe/Simferopol",
+ "Europe/Skopje",
+ "Europe/Sofia",
+ "Europe/Stockholm",
+ "Europe/Tallinn",
+ "Europe/Tirane",
+ "Europe/Tiraspol",
+ "Europe/Uzhgorod",
+ "Europe/Vaduz",
+ "Europe/Vatican",
+ "Europe/Vienna",
+ "Europe/Vilnius",
+ "Europe/Volgograd",
+ "Europe/Warsaw",
+ "Europe/Zagreb",
+ "Europe/Zaporozhye",
+ "Europe/Zurich",
+ "GB",
+ "GB-Eire",
+ "GMT",
+ "GMT+0",
+ "GMT-0",
+ "GMT0",
+ "Greenwich",
+ "HST",
+ "Hongkong",
+ "Iceland",
+ "Indian/Antananarivo",
+ "Indian/Chagos",
+ "Indian/Christmas",
+ "Indian/Cocos",
+ "Indian/Comoro",
+ "Indian/Kerguelen",
+ "Indian/Mahe",
+ "Indian/Maldives",
+ "Indian/Mauritius",
+ "Indian/Mayotte",
+ "Indian/Reunion",
+ "Iran",
+ "Israel",
+ "Jamaica",
+ "Japan",
+ "Kwajalein",
+ "Libya",
+ "MET",
+ "MST",
+ "MST7MDT",
+ "Mexico/BajaNorte",
+ "Mexico/BajaSur",
+ "Mexico/General",
+ "NZ",
+ "NZ-CHAT",
+ "Navajo",
+ "PRC",
+ "PST8PDT",
+ "Pacific/Apia",
+ "Pacific/Auckland",
+ "Pacific/Bougainville",
+ "Pacific/Chatham",
+ "Pacific/Chuuk",
+ "Pacific/Easter",
+ "Pacific/Efate",
+ "Pacific/Enderbury",
+ "Pacific/Fakaofo",
+ "Pacific/Fiji",
+ "Pacific/Funafuti",
+ "Pacific/Galapagos",
+ "Pacific/Gambier",
+ "Pacific/Guadalcanal",
+ "Pacific/Guam",
+ "Pacific/Honolulu",
+ "Pacific/Johnston",
+ "Pacific/Kiritimati",
+ "Pacific/Kosrae",
+ "Pacific/Kwajalein",
+ "Pacific/Majuro",
+ "Pacific/Marquesas",
+ "Pacific/Midway",
+ "Pacific/Nauru",
+ "Pacific/Niue",
+ "Pacific/Norfolk",
+ "Pacific/Noumea",
+ "Pacific/Pago_Pago",
+ "Pacific/Palau",
+ "Pacific/Pitcairn",
+ "Pacific/Pohnpei",
+ "Pacific/Ponape",
+ "Pacific/Port_Moresby",
+ "Pacific/Rarotonga",
+ "Pacific/Saipan",
+ "Pacific/Samoa",
+ "Pacific/Tahiti",
+ "Pacific/Tarawa",
+ "Pacific/Tongatapu",
+ "Pacific/Truk",
+ "Pacific/Wake",
+ "Pacific/Wallis",
+ "Pacific/Yap",
+ "Poland",
+ "Portugal",
+ "ROC",
+ "ROK",
+ "Singapore",
+ "Turkey",
+ "UCT",
+ "US/Alaska",
+ "US/Aleutian",
+ "US/Arizona",
+ "US/Central",
+ "US/East-Indiana",
+ "US/Eastern",
+ "US/Hawaii",
+ "US/Indiana-Starke",
+ "US/Michigan",
+ "US/Mountain",
+ "US/Pacific",
+ "US/Pacific-New",
+ "US/Samoa",
+ "UTC",
+ "Universal",
+ "W-SU",
+ "WET",
+ "Zulu"
+ )
>
> fullPOSIXctEx <- function(tstr) {
+ for (tz in tzvec) {
+ ## for anytime, the returned POSIXct object has the 'target' timezone (default is local)
+ at <- format( anytime(tstr, tz=tz) )
+ ## for as.POSIXct, we give tz when we format
+ pt <- format(as.POSIXct(tstr ), tz=tz)
+ if (verbose) cat(at, " -- ", pt, " -- ", tz, "\n")
+ stopifnot(all.equal(at, pt))
+ }
+ }
>
> fullDateEx <- function(tstr) {
+ for (tz in tzvec) {
+ at <- format(anydate(tstr))
+ pt <- format(as.Date(tstr))
+ if (verbose) cat(at, " -- ", pt, " -- ", tz, "\n")
+ stopifnot(all.equal(at, pt))
+ }
+ }
>
> fullPOSIXctEx("2016-07-11 12:13:14") # test summer
Error in fullPOSIXctEx("2016-07-11 12:13:14") : at and pt are not equal:
1 string mismatch
Calls: fullPOSIXctEx -> stopifnot
Execution halted
Running the tests in ‘tests/simpleTests.R’ failed.
Complete output:
>
> options(digits.secs=6)
>
> library(anytime)
>
> refT <- as.POSIXct(as.POSIXlt(format(as.Date("2016-01-01")+0:2)))
> refD <- as.Date("2016-01-01")+0:2
>
> ## Dates: Integer
> stopifnot(refD == anydate(20160101L + 0:2))
> stopifnot(refT == anytime(20160101L + 0:2, oldHeuristic=TRUE))
Error: refT == anytime(20160101L + 0:2, oldHeuristic = TRUE) are not all TRUE
Execution halted
Flavor: r-patched-solaris-x86
Current CRAN status: OK: 12
Current CRAN status: NOTE: 8, OK: 4
Version: 1.66.0-1
Check: installed package size
Result: NOTE
installed size is 144.8Mb
sub-directories of 1Mb or more:
include 144.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Current CRAN status: ERROR: 1, OK: 11
Version: 0.6.15
Check: running tests for arch ‘i386’
Result: ERROR
Running 'AESTest.R' [0s]
Comparing 'AESTest.Rout' to 'AESTest.Rout.save' ... OK
Running 'digestTest.R' [1s]
Comparing 'digestTest.Rout' to 'digestTest.Rout.save' ... OK
Running 'hmacTest.R' [0s]
Comparing 'hmacTest.Rout' to 'hmacTest.Rout.save' ... OK
Running 'load-unload.R' [0s]
Running 'num2hexTest.R' [0s]
Running 'sha1Test.R' [1s]
Running the tests in 'tests/sha1Test.R' failed.
Complete output:
>
> ## tests for digest, taken from the examples in the manual page
>
> stopifnot(require(digest))
Loading required package: digest
>
> # calculate sha1 fingerprints
> x.numeric <- seq(0, 1, length = 4 ^ 3)
> x.list <- list(letters, x.numeric)
> x.dataframe <- data.frame(
+ X = letters,
+ Y = x.numeric[2],
+ Z = factor(letters),
+ stringsAsFactors = FALSE
+ )
> x.matrix.num <- as.matrix(x.numeric)
> x.matrix.letter <- as.matrix(letters)
> x.dataframe.round <- x.dataframe
> x.dataframe.round$Y <- signif(x.dataframe.round$Y, 14)
> x.factor <- factor(letters)
> x.array.num <- as.array(x.numeric)
>
> # tests using detailed numbers
> stopifnot(
+ !identical(x.numeric, signif(x.numeric, 14))
+ )
> stopifnot(
+ !identical(x.matrix.num, signif(x.matrix.num, 14))
+ )
> # returns the correct SHA1
> stopifnot(
+ identical(
+ sha1(x.numeric),
+ {
+ z <- digest:::num2hex(x.numeric)
+ attr(z, "digest::sha1") <- list(
+ class = class(x.numeric),
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(letters),
+ {
+ z <- letters
+ attr(z, "digest::sha1") <- list(
+ class = "character",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.list),
+ {
+ z <- sapply(x.list, sha1)
+ attr(z, "digest::sha1") <- list(
+ class = "list",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.dataframe),
+ {
+ z <- sapply(x.dataframe, sha1)
+ attr(z, "digest::sha1") <- list(
+ class = "data.frame",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.matrix.num),
+ {
+ z <- matrix(
+ apply(x.matrix.num, 2, digest:::num2hex),
+ ncol = ncol(x.matrix.num)
+ )
+ attr(z, "digest::sha1") <- list(
+ class = "matrix",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.matrix.letter),
+ {
+ z <- x.matrix.letter
+ attr(z, "digest::sha1") <- list(
+ class = "matrix",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.factor),
+ {
+ z <- x.factor
+ attr(z, "digest::sha1") <- list(
+ class = "factor",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> # a matrix and a vector should have a different hash
> stopifnot(
+ !identical(
+ sha1(x.numeric),
+ sha1(matrix(x.numeric, nrow = 1))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(x.numeric),
+ sha1(matrix(x.numeric, ncol = 1))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(letters),
+ sha1(matrix(letters, nrow = 1))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(letters),
+ sha1(matrix(letters, ncol = 1))
+ )
+ )
>
> # character(0) and numeric(0) should have a different hash
> stopifnot(!identical(sha1(character(0)), sha1(numeric(0))))
>
> # a POSIXct and a POSIXlt should give a different hash
> z <- as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC")
> stopifnot(
+ !identical(
+ sha1(z),
+ sha1(as.POSIXlt(z))
+ )
+ )
>
> lm.model.0 <- lm(weight ~ Time, data = ChickWeight)
> lm.model.1 <- lm(weight ~ 1, data = ChickWeight)
> glm.model.0 <- glm(weight ~ Time, data = ChickWeight, family = poisson)
> glm.model.1 <- glm(weight ~ 1, data = ChickWeight, family = poisson)
>
> anova.list <- list(
+ lm = anova(lm.model.0, lm.model.1),
+ glm = anova(glm.model.0, glm.model.1),
+ glm.test = anova(glm.model.0, glm.model.1, test = "Chisq")
+ )
>
> # works with lm anova"
> stopifnot(
+ identical(
+ sha1(anova.list[["lm"]]),
+ {
+ y <- apply(
+ anova.list[["lm"]],
+ 1,
+ digest:::num2hex,
+ digits = 4,
+ zapsmall = 7
+ )
+ attr(y, "digest::sha1") <- list(
+ class = c("anova", "data.frame"),
+ digits = 4L,
+ zapsmall = 7L
+ )
+ digest(y, algo = "sha1")
+ }
+ )
+ )
> # works with glm anova"
> stopifnot(
+ identical(
+ sha1(anova.list[["glm"]]),
+ {
+ y <- apply(
+ anova.list[["glm"]],
+ 1,
+ digest:::num2hex,
+ digits = 4,
+ zapsmall = 7
+ )
+ attr(y, "digest::sha1") <- list(
+ class = c("anova", "data.frame"),
+ digits = 4L,
+ zapsmall = 7L
+ )
+ digest(y, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(anova.list[["glm.test"]]),
+ {
+ y <- apply(
+ anova.list[["glm.test"]],
+ 1,
+ digest:::num2hex,
+ digits = 4,
+ zapsmall = 7
+ )
+ attr(y, "digest::sha1") <- list(
+ class = c("anova", "data.frame"),
+ digits = 4L,
+ zapsmall = 7L
+ )
+ digest(y, algo = "sha1")
+ }
+ )
+ )
>
> test.element <- list(
+ # NULL
+ NULL,
+ # empty classes
+ logical(0), integer(0), numeric(0), character(0), list(), data.frame(),
+ # scalar
+ TRUE, FALSE, 1L, 1, "a",
+ # date. Make sure to add the time zone. Otherwise the test might fail
+ as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC"),
+ # vector
+ c(TRUE, FALSE), 1:3, seq(0, 10, length = 4), letters[1:3],
+ factor(letters[4:6]),
+ as.POSIXct(c("2015-01-02 03:04:06.07", "1960-12-31 23:59:59"), tz = "UTC")
+ )
> select.vector <- which(sapply(test.element, length) > 1)
> test.element <- c(
+ test.element,
+ # add a data.frame
+ list(expand.grid(test.element[select.vector])),
+ # add a list
+ list(test.element[select.vector]),
+ # add matrices
+ list(matrix(1:10)),
+ list(matrix(seq(0, 10, length = 4))),
+ list(matrix(letters))
+ )
> # different values for digits or zapsmall gives different hashes
> # expect for NULL
> stopifnot(
+ identical(
+ sha1(NULL, digits = 14),
+ sha1(NULL, digits = 13)
+ )
+ )
> stopifnot(
+ identical(
+ sha1(NULL, zapsmall = 14),
+ sha1(NULL, zapsmall = 13)
+ )
+ )
> for (i in tail(seq_along(test.element), -1)) {
+ stopifnot(
+ !identical(
+ sha1(test.element[[i]], digits = 14),
+ sha1(test.element[[i]], digits = 13)
+ )
+ )
+ stopifnot(
+ !identical(
+ sha1(test.element[[i]], zapsmall = 7),
+ sha1(test.element[[i]], zapsmall = 6)
+ )
+ )
+ }
> test.element <- c(test.element, anova.list)
>
> cat("\ncorrect <- c(\n")
correct <- c(
> cat(
+ sprintf(" \"%s\"", sapply(test.element, sha1)),
+ sep = ",\n"
+ )
"8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
"d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
"af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
"0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
"095886422ad26e315c0960ef6b09842a1f9cc0ce",
"6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
"c1113ba008a349de64da2a7a724e501c1eb3929b",
"6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
"1c1b5393c68a643bc79c277c6d7374d0b30cd985",
"b48c17a2ac82601ff38df374f87d76005fb61cbd",
"35280c99aa6a48bfc2810b72b763ccac0f632207",
"f757cc017308d217f35ed8f0c001a57b97308fb7",
"cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
"a14384d1997440bad13b97b3ccfb3b8c0392e79a",
"555f6bea49e58a2c2541060a21c2d4f9078c3086",
"631d18dec342e2cb87614864ba525ebb9ad6a124",
"b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
"25485ba7e315956267b3fdc521b421bbb046325d",
"6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
"cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
"2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
"270ed85d46524a59e3274d89a1bbf693521cb6af",
"60e09482f12fda20f7d4a70e379c969c5a73f512",
"10380001af2a541b5feefc7aab9f719b67330a42",
"4580ff07f27eb8321421efac1676a80d9239572a",
"d3022c5a223caaf77e9c564e024199e5d6f51bd5",
"f54742ac61edd8c3980354620816c762b524dfc7"
> cat(")\n")
)
>
> correct <- c(
+ "8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
+ "d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
+ "af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
+ "0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
+ "095886422ad26e315c0960ef6b09842a1f9cc0ce",
+ "6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
+ "c1113ba008a349de64da2a7a724e501c1eb3929b",
+ "6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
+ "1c1b5393c68a643bc79c277c6d7374d0b30cd985",
+ "b48c17a2ac82601ff38df374f87d76005fb61cbd",
+ "35280c99aa6a48bfc2810b72b763ccac0f632207",
+ "f757cc017308d217f35ed8f0c001a57b97308fb7",
+ "cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
+ "a14384d1997440bad13b97b3ccfb3b8c0392e79a",
+ "555f6bea49e58a2c2541060a21c2d4f9078c3086",
+ "631d18dec342e2cb87614864ba525ebb9ad6a124",
+ "b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
+ "25485ba7e315956267b3fdc521b421bbb046325d",
+ "6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
+ "cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
+ "2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
+ "270ed85d46524a59e3274d89a1bbf693521cb6af",
+ "60e09482f12fda20f7d4a70e379c969c5a73f512",
+ "10380001af2a541b5feefc7aab9f719b67330a42",
+ "4580ff07f27eb8321421efac1676a80d9239572a",
+ "d3022c5a223caaf77e9c564e024199e5d6f51bd5",
+ "f54742ac61edd8c3980354620816c762b524dfc7"
+ )
> # each object should yield a different hash
> stopifnot(!any(duplicated(correct)))
> # returns the same SHA1 on both 32-bit and 64-bit OS"
> for (i in seq_along(test.element)) {
+ stopifnot(
+ identical(
+ sha1(test.element[[i]]),
+ correct[i]
+ )
+ )
+ }
>
> # does work with empty lists and data.frames
> stopifnot(is.character(sha1(list())))
> stopifnot(is.character(sha1(data.frame())))
> stopifnot(is.character(sha1(list(a = 1, b = list(), c = data.frame()))))
>
> # does work with complex type
> stopifnot(is.character(sha1(2 + 5i))) # single complex number
> stopifnot(is.character(sha1(1:10 + 5i))) # vector of complex numbers
>
> # complex number with only the real part should be different from real number
> stopifnot(sha1(2) != sha1(2 + 0i))
>
> # does work with Date type
> stopifnot(is.character(sha1(Sys.Date())))
> stopifnot(sha1(as.Date("1980-01-01")) != sha1(as.Date("1990-01-01")))
>
> # different hashes for differently shaped arrays that contain the same data
> data <- 1:8
> a <- array(data, dim = c(2,2,2)) # cube 2x2x2
> b <- array(data, dim = c(2,4,1)) # matrix 2x4
> stopifnot(sha1(a) != sha1(b))
>
> # test error message
> junk <- pi
> class(junk) <- c("A", "B")
> error.message <- try(sha1(junk))
Error : sha1() has no method for the 'A', 'B' class
> stopifnot(
+ grepl("sha1\\(\\) has no method for the 'A', 'B' class", error.message)
+ )
>
> junk <- function(
+ x, y = list(...), test = TRUE, start = NULL, text = "abc", family = poisson,
+ ...
+ ){
+ sha1(x)
+ }
> stopifnot(sha1(junk) == "be194e8cdae926c13fd4e2c65bf6cb7a28dd0505")
> stopifnot(sha1(junk) == sha1(junk, environment = TRUE))
> stopifnot(sha1(junk) != sha1(junk, environment = FALSE))
>
> stopifnot(
+ sha1(matrix(integer(0))) == "e13485e1b995f3e36d43674dcbfedea08ce237bc"
+ )
> stopifnot(
+ !identical(
+ sha1(matrix(integer(0))),
+ sha1(matrix(character(0)))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(matrix(integer(0))),
+ sha1(matrix(numeric(0)))
+ )
+ )
>
> if (getRversion() < "3.5.0") {
+ stopifnot(
+ identical(
+ sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", NULL)),
+ "93ab6a61f1a2ad50d4bf58396dc38cd3821b2eaf"
+ )
+ )
+ }
Error: identical(sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", .... is not TRUE
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.6.15
Check: running tests for arch ‘x64’
Result: ERROR
Running 'AESTest.R' [0s]
Comparing 'AESTest.Rout' to 'AESTest.Rout.save' ... OK
Running 'digestTest.R' [1s]
Comparing 'digestTest.Rout' to 'digestTest.Rout.save' ... OK
Running 'hmacTest.R' [0s]
Comparing 'hmacTest.Rout' to 'hmacTest.Rout.save' ... OK
Running 'load-unload.R' [0s]
Running 'num2hexTest.R' [1s]
Running 'sha1Test.R' [1s]
Running the tests in 'tests/sha1Test.R' failed.
Complete output:
>
> ## tests for digest, taken from the examples in the manual page
>
> stopifnot(require(digest))
Loading required package: digest
>
> # calculate sha1 fingerprints
> x.numeric <- seq(0, 1, length = 4 ^ 3)
> x.list <- list(letters, x.numeric)
> x.dataframe <- data.frame(
+ X = letters,
+ Y = x.numeric[2],
+ Z = factor(letters),
+ stringsAsFactors = FALSE
+ )
> x.matrix.num <- as.matrix(x.numeric)
> x.matrix.letter <- as.matrix(letters)
> x.dataframe.round <- x.dataframe
> x.dataframe.round$Y <- signif(x.dataframe.round$Y, 14)
> x.factor <- factor(letters)
> x.array.num <- as.array(x.numeric)
>
> # tests using detailed numbers
> stopifnot(
+ !identical(x.numeric, signif(x.numeric, 14))
+ )
> stopifnot(
+ !identical(x.matrix.num, signif(x.matrix.num, 14))
+ )
> # returns the correct SHA1
> stopifnot(
+ identical(
+ sha1(x.numeric),
+ {
+ z <- digest:::num2hex(x.numeric)
+ attr(z, "digest::sha1") <- list(
+ class = class(x.numeric),
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(letters),
+ {
+ z <- letters
+ attr(z, "digest::sha1") <- list(
+ class = "character",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.list),
+ {
+ z <- sapply(x.list, sha1)
+ attr(z, "digest::sha1") <- list(
+ class = "list",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.dataframe),
+ {
+ z <- sapply(x.dataframe, sha1)
+ attr(z, "digest::sha1") <- list(
+ class = "data.frame",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.matrix.num),
+ {
+ z <- matrix(
+ apply(x.matrix.num, 2, digest:::num2hex),
+ ncol = ncol(x.matrix.num)
+ )
+ attr(z, "digest::sha1") <- list(
+ class = "matrix",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.matrix.letter),
+ {
+ z <- x.matrix.letter
+ attr(z, "digest::sha1") <- list(
+ class = "matrix",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(x.factor),
+ {
+ z <- x.factor
+ attr(z, "digest::sha1") <- list(
+ class = "factor",
+ digits = 14L,
+ zapsmall = 7L
+ )
+ digest(z, algo = "sha1")
+ }
+ )
+ )
> # a matrix and a vector should have a different hash
> stopifnot(
+ !identical(
+ sha1(x.numeric),
+ sha1(matrix(x.numeric, nrow = 1))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(x.numeric),
+ sha1(matrix(x.numeric, ncol = 1))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(letters),
+ sha1(matrix(letters, nrow = 1))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(letters),
+ sha1(matrix(letters, ncol = 1))
+ )
+ )
>
> # character(0) and numeric(0) should have a different hash
> stopifnot(!identical(sha1(character(0)), sha1(numeric(0))))
>
> # a POSIXct and a POSIXlt should give a different hash
> z <- as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC")
> stopifnot(
+ !identical(
+ sha1(z),
+ sha1(as.POSIXlt(z))
+ )
+ )
>
> lm.model.0 <- lm(weight ~ Time, data = ChickWeight)
> lm.model.1 <- lm(weight ~ 1, data = ChickWeight)
> glm.model.0 <- glm(weight ~ Time, data = ChickWeight, family = poisson)
> glm.model.1 <- glm(weight ~ 1, data = ChickWeight, family = poisson)
>
> anova.list <- list(
+ lm = anova(lm.model.0, lm.model.1),
+ glm = anova(glm.model.0, glm.model.1),
+ glm.test = anova(glm.model.0, glm.model.1, test = "Chisq")
+ )
>
> # works with lm anova"
> stopifnot(
+ identical(
+ sha1(anova.list[["lm"]]),
+ {
+ y <- apply(
+ anova.list[["lm"]],
+ 1,
+ digest:::num2hex,
+ digits = 4,
+ zapsmall = 7
+ )
+ attr(y, "digest::sha1") <- list(
+ class = c("anova", "data.frame"),
+ digits = 4L,
+ zapsmall = 7L
+ )
+ digest(y, algo = "sha1")
+ }
+ )
+ )
> # works with glm anova"
> stopifnot(
+ identical(
+ sha1(anova.list[["glm"]]),
+ {
+ y <- apply(
+ anova.list[["glm"]],
+ 1,
+ digest:::num2hex,
+ digits = 4,
+ zapsmall = 7
+ )
+ attr(y, "digest::sha1") <- list(
+ class = c("anova", "data.frame"),
+ digits = 4L,
+ zapsmall = 7L
+ )
+ digest(y, algo = "sha1")
+ }
+ )
+ )
> stopifnot(
+ identical(
+ sha1(anova.list[["glm.test"]]),
+ {
+ y <- apply(
+ anova.list[["glm.test"]],
+ 1,
+ digest:::num2hex,
+ digits = 4,
+ zapsmall = 7
+ )
+ attr(y, "digest::sha1") <- list(
+ class = c("anova", "data.frame"),
+ digits = 4L,
+ zapsmall = 7L
+ )
+ digest(y, algo = "sha1")
+ }
+ )
+ )
>
> test.element <- list(
+ # NULL
+ NULL,
+ # empty classes
+ logical(0), integer(0), numeric(0), character(0), list(), data.frame(),
+ # scalar
+ TRUE, FALSE, 1L, 1, "a",
+ # date. Make sure to add the time zone. Otherwise the test might fail
+ as.POSIXct("2015-01-02 03:04:06.07", tz = "UTC"),
+ # vector
+ c(TRUE, FALSE), 1:3, seq(0, 10, length = 4), letters[1:3],
+ factor(letters[4:6]),
+ as.POSIXct(c("2015-01-02 03:04:06.07", "1960-12-31 23:59:59"), tz = "UTC")
+ )
> select.vector <- which(sapply(test.element, length) > 1)
> test.element <- c(
+ test.element,
+ # add a data.frame
+ list(expand.grid(test.element[select.vector])),
+ # add a list
+ list(test.element[select.vector]),
+ # add matrices
+ list(matrix(1:10)),
+ list(matrix(seq(0, 10, length = 4))),
+ list(matrix(letters))
+ )
> # different values for digits or zapsmall gives different hashes
> # expect for NULL
> stopifnot(
+ identical(
+ sha1(NULL, digits = 14),
+ sha1(NULL, digits = 13)
+ )
+ )
> stopifnot(
+ identical(
+ sha1(NULL, zapsmall = 14),
+ sha1(NULL, zapsmall = 13)
+ )
+ )
> for (i in tail(seq_along(test.element), -1)) {
+ stopifnot(
+ !identical(
+ sha1(test.element[[i]], digits = 14),
+ sha1(test.element[[i]], digits = 13)
+ )
+ )
+ stopifnot(
+ !identical(
+ sha1(test.element[[i]], zapsmall = 7),
+ sha1(test.element[[i]], zapsmall = 6)
+ )
+ )
+ }
> test.element <- c(test.element, anova.list)
>
> cat("\ncorrect <- c(\n")
correct <- c(
> cat(
+ sprintf(" \"%s\"", sapply(test.element, sha1)),
+ sep = ",\n"
+ )
"8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
"d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
"af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
"0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
"095886422ad26e315c0960ef6b09842a1f9cc0ce",
"6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
"c1113ba008a349de64da2a7a724e501c1eb3929b",
"6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
"1c1b5393c68a643bc79c277c6d7374d0b30cd985",
"b48c17a2ac82601ff38df374f87d76005fb61cbd",
"35280c99aa6a48bfc2810b72b763ccac0f632207",
"f757cc017308d217f35ed8f0c001a57b97308fb7",
"cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
"a14384d1997440bad13b97b3ccfb3b8c0392e79a",
"555f6bea49e58a2c2541060a21c2d4f9078c3086",
"631d18dec342e2cb87614864ba525ebb9ad6a124",
"b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
"25485ba7e315956267b3fdc521b421bbb046325d",
"6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
"cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
"2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
"270ed85d46524a59e3274d89a1bbf693521cb6af",
"60e09482f12fda20f7d4a70e379c969c5a73f512",
"10380001af2a541b5feefc7aab9f719b67330a42",
"4580ff07f27eb8321421efac1676a80d9239572a",
"d3022c5a223caaf77e9c564e024199e5d6f51bd5",
"f54742ac61edd8c3980354620816c762b524dfc7"
> cat(")\n")
)
>
> correct <- c(
+ "8d9c05ec7ae28b219c4c56edbce6a721bd68af82",
+ "d61eeea290dd09c5a3eba41c2b3174b6e4e2366d",
+ "af23305d27f0409c91bdb86ba7c0cdb2e09a5dc6",
+ "0c9ca70ce773deb0d9c0b0579c3b94856edf15cc",
+ "095886422ad26e315c0960ef6b09842a1f9cc0ce",
+ "6cc04c6c432bb91e210efe0b25c6ca809e6df2e3",
+ "c1113ba008a349de64da2a7a724e501c1eb3929b",
+ "6e12370bdc6fc457cc154f0525e22c6aa6439f4d",
+ "1c1b5393c68a643bc79c277c6d7374d0b30cd985",
+ "b48c17a2ac82601ff38df374f87d76005fb61cbd",
+ "35280c99aa6a48bfc2810b72b763ccac0f632207",
+ "f757cc017308d217f35ed8f0c001a57b97308fb7",
+ "cfcf101b8449af67d34cdc1bcb0432fe9e4de08e",
+ "a14384d1997440bad13b97b3ccfb3b8c0392e79a",
+ "555f6bea49e58a2c2541060a21c2d4f9078c3086",
+ "631d18dec342e2cb87614864ba525ebb9ad6a124",
+ "b6c04f16b6fdacc794ea75c8c8dd210f99fafa65",
+ "25485ba7e315956267b3fdc521b421bbb046325d",
+ "6def3ca353dfc1a904bddd00e6a410d41ac7ab01",
+ "cf220bcf84c3d0ab1b01f8f764396941d15ff20f",
+ "2af8021b838f613aee7670bed19d0ddf1d6bc0c1",
+ "270ed85d46524a59e3274d89a1bbf693521cb6af",
+ "60e09482f12fda20f7d4a70e379c969c5a73f512",
+ "10380001af2a541b5feefc7aab9f719b67330a42",
+ "4580ff07f27eb8321421efac1676a80d9239572a",
+ "d3022c5a223caaf77e9c564e024199e5d6f51bd5",
+ "f54742ac61edd8c3980354620816c762b524dfc7"
+ )
> # each object should yield a different hash
> stopifnot(!any(duplicated(correct)))
> # returns the same SHA1 on both 32-bit and 64-bit OS"
> for (i in seq_along(test.element)) {
+ stopifnot(
+ identical(
+ sha1(test.element[[i]]),
+ correct[i]
+ )
+ )
+ }
>
> # does work with empty lists and data.frames
> stopifnot(is.character(sha1(list())))
> stopifnot(is.character(sha1(data.frame())))
> stopifnot(is.character(sha1(list(a = 1, b = list(), c = data.frame()))))
>
> # does work with complex type
> stopifnot(is.character(sha1(2 + 5i))) # single complex number
> stopifnot(is.character(sha1(1:10 + 5i))) # vector of complex numbers
>
> # complex number with only the real part should be different from real number
> stopifnot(sha1(2) != sha1(2 + 0i))
>
> # does work with Date type
> stopifnot(is.character(sha1(Sys.Date())))
> stopifnot(sha1(as.Date("1980-01-01")) != sha1(as.Date("1990-01-01")))
>
> # different hashes for differently shaped arrays that contain the same data
> data <- 1:8
> a <- array(data, dim = c(2,2,2)) # cube 2x2x2
> b <- array(data, dim = c(2,4,1)) # matrix 2x4
> stopifnot(sha1(a) != sha1(b))
>
> # test error message
> junk <- pi
> class(junk) <- c("A", "B")
> error.message <- try(sha1(junk))
Error : sha1() has no method for the 'A', 'B' class
> stopifnot(
+ grepl("sha1\\(\\) has no method for the 'A', 'B' class", error.message)
+ )
>
> junk <- function(
+ x, y = list(...), test = TRUE, start = NULL, text = "abc", family = poisson,
+ ...
+ ){
+ sha1(x)
+ }
> stopifnot(sha1(junk) == "be194e8cdae926c13fd4e2c65bf6cb7a28dd0505")
> stopifnot(sha1(junk) == sha1(junk, environment = TRUE))
> stopifnot(sha1(junk) != sha1(junk, environment = FALSE))
>
> stopifnot(
+ sha1(matrix(integer(0))) == "e13485e1b995f3e36d43674dcbfedea08ce237bc"
+ )
> stopifnot(
+ !identical(
+ sha1(matrix(integer(0))),
+ sha1(matrix(character(0)))
+ )
+ )
> stopifnot(
+ !identical(
+ sha1(matrix(integer(0))),
+ sha1(matrix(numeric(0)))
+ )
+ )
>
> if (getRversion() < "3.5.0") {
+ stopifnot(
+ identical(
+ sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", NULL)),
+ "93ab6a61f1a2ad50d4bf58396dc38cd3821b2eaf"
+ )
+ )
+ }
Error: identical(sha1(serialize("e13485e1b995f3e36d43674dcbfedea08ce237bc", .... is not TRUE
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: WARN: 1, NOTE: 8
Version: 0.2.6
Flags: --no-examples --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gputools’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.6
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gputools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gputools’
Flavors: r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.2.6
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in packageDescription("gputools") :
no package 'gputools' was found
Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
at gcbd.Rnw:860, subscript out of bounds
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Warning in packageDescription("gputools") :
no package 'gputools' was found
Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
at gcbd.Rnw:860, subscript out of bounds
Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Current CRAN status: NOTE: 6, OK: 6
Version: 0.0.3
Check: compiled code
Result: NOTE
File ‘gettz/libs/gettz.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: WARN: 1, OK: 11
Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
sh: line 1: 29372 Trace/BPT trap: 5 /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/x13ashtml /var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T//RtmpjUDYzi/x13717e8f67458/iofile -n -s 2> /dev/null
dyld: lazy symbol binding failed: Symbol not found: _mkostemp
Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _mkostemp
Referenced from: /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/x13binary/bin/../lib/libgfortran.3.dylib (which was built for Mac OS X 10.12)
Expected in: /usr/lib/libSystem.B.dylib
Program received signal SIGTRAP: Trace/breakpoint trap.
Backtrace for this error:
#0 0x121f26579
#1 0x121f25945
#2 0x7fff93ac4529
Quitting from lines 33-34 (gunsales.Rmd)
Error: processing vignette 'gunsales.Rmd' failed with diagnostics:
X-13 has returned a non-zero exist status, which means that the current spec file cannot be processed for an unknown reason.
Execution halted
Flavor: r-release-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 6
Current CRAN status: ERROR: 1, OK: 11
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘POSIXt.R’
Running ‘data.frame.R’
Running ‘runTests.R’ [11s/16s]
Running ‘simpleTests.R’
Running ‘zooTests.R’
Running the tests in ‘tests/runTests.R’ failed.
Complete output:
>
> pkg <- "nanotime"
>
> if (!requireNamespace("RUnit", quietly = TRUE)) {
+ cat("R package 'RUnit' cannot be loaded -- no unit tests run for package", pkg, "\n")
+ } else if (!requireNamespace("nanotime", quietly = TRUE)) {
+ cat("R package 'nanotime' cannot be loaded -- no unit tests run for package", pkg, "\n")
+ } else if (!requireNamespace("bit64", quietly = TRUE)) {
+ cat("R package 'bit64' cannot be loaded -- no unit tests run for package", pkg, "\n")
+ } else {
+
+ library(RUnit)
+ library(nanotime)
+ library(bit64)
+
+ ## Define tests
+ testSuite <- defineTestSuite(name=paste(pkg, "Unit Tests"),
+ dirs=system.file("unitTests", package=pkg),
+ testFileRegexp = "^test_.+\\.[rR]$",
+ testFuncRegexp = "^[Tt]est+")
+
+ ## Run tests
+ tests <- runTestSuite(testSuite)
+
+ ## Print results
+ printTextProtocol(tests)
+
+ ## Return success or failure to R CMD CHECK
+ if (getErrors(tests)$nFail > 0) {
+ print(getErrors(tests)$nFail)
+ stop("TEST FAILED!")
+ }
+ if (getErrors(tests)$nErr > 0) {
+ print(getErrors(tests)$nErr)
+ stop("TEST HAD ERRORS!")
+ }
+ if (getErrors(tests)$nTestFunc < 1) {
+ print(getErrors(tests)$nTestFunc)
+ stop("NO TEST FUNCTIONS RUN!")
+ }
+
+ }
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:bit':
still.identical
The following objects are masked from 'package:base':
%in%, :, is.double, match, order, rank
Executing test function test_data_frame_cbind ... done successfully.
Executing test function test_data_frame_constructor ... done successfully.
Executing test function test_data_frame_rbind ... done successfully.
Executing test function test_ANY_Logic_nano ... Error in 1 | nanotime(1) :
operations are possible only for numeric, logical or complex types
done successfully.
Executing test function test_ANY_minus_nano ... Error in 1 - nanotime(2) : invalid operand types
done successfully.
Executing test function test_ANY_plus_nano ... Error in "a" + nanotime(2) : invalid operand types
done successfully.
Executing test function test_Math2_nano ... Error in round(new("nanotime", .S3Class = "integer64", structure(4.94065645841247e-324, class = "integer64"))) :
non-numeric argument to mathematical function
done successfully.
Executing test function test_Math_nano ... Error in sin(nanotime(1)) : non-numeric argument to mathematical function
done successfully.
Executing test function test_as_Date ... done successfully.
Executing test function test_as_POSIXct ... done successfully.
Executing test function test_binary_mul ... Note: method with signature 'nanotime#ANY' chosen for function '*',
target signature 'nanotime#nanotime'.
"ANY#nanotime" would also be valid
Error in nanotime(1) * nanotime(2) :
operation not defined for "nanotime" objects
In addition: Warning messages:
1: In check_tzones(target, current) : 'tzone' attributes are inconsistent
2: In check_tzones(target, current) : 'tzone' attributes are inconsistent
3: In check_tzones(target, current) : 'tzone' attributes are inconsistent
done successfully.
Executing test function test_c ... done successfully.
Executing test function test_format_default ... done successfully.
Executing test function test_format_fmt_default ... done successfully.
Executing test function test_format_fmt_from_options ... Timing stopped at: 0.004 0 0.003
Error in checkEquals(format(a), a_ny) : 1 string mismatch
done successfully.
Executing test function test_format_fmt_from_parameter ... Timing stopped at: 0.004 0.001 0.006
Error in checkEquals(format(a), a_ny) : 1 string mismatch
done successfully.
Executing test function test_format_na ... Timing stopped at: 0.002 0.001 0.003
Error in checkEquals(f, exp) : 2 string mismatches
done successfully.
Executing test function test_format_tz ... Timing stopped at: 0.003 0 0.003
Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
1 string mismatch
done successfully.
Executing test function test_format_tz_from_options ... Timing stopped at: 0.003 0 0.003
Error in checkEquals(format(a), a_ny) : 1 string mismatch
done successfully.
Executing test function test_format_tzone ... Timing stopped at: 0.003 0 0.003
Error in checkEquals(format(a), a_ny) : 1 string mismatch
done successfully.
Executing test function test_is.na ... done successfully.
Executing test function test_nano_Logic_ANY ... Error in nanotime(1) | 1 :
operations are possible only for numeric, logical or complex types
done successfully.
Executing test function test_nano_div_ANY ... Error in nanotime(1)/1 : operation not defined for "nanotime" objects
done successfully.
Executing test function test_nano_minus_ANY ... Error in nanotime(1) - "a" : invalid operand types
done successfully.
Executing test function test_nano_mul_ANY ... Error in nanotime(1) * 1 : operation not defined for "nanotime" objects
done successfully.
Executing test function test_nano_mul_nano ... Error in nanotime(1) * nanotime(1) :
operation not defined for "nanotime" objects
done successfully.
Executing test function test_nano_plus_ANY ... Error in nanotime(1) + "a" : invalid operand types
done successfully.
Executing test function test_nanotime_Date ... done successfully.
Executing test function test_nanotime_POSIXct ... done successfully.
Executing test function test_nanotime_POSIXct_keep_names ... done successfully.
Executing test function test_nanotime_POSIXlt ... done successfully.
Executing test function test_nanotime_POSIXlt_keep_names ... done successfully.
Executing test function test_nanotime_character ... Timing stopped at: 0.006 0 0.006
Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
'is.NA' value mismatch: 1 in current 0 in target
done successfully.
Executing test function test_nanotime_character_keep_names ... Timing stopped at: 0.007 0.001 0.008
Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 1970-01-01T00:00:00.000000001+00:00
done successfully.
Executing test function test_nanotime_generic ... done successfully.
Executing test function test_nanotime_matrix ... Timing stopped at: 0.002 0 0.003
Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 1970-01-11T00:00:00.987654321+00:00
done successfully.
Executing test function test_nanotime_numeric_keep_names ... done successfully.
Executing test function test_subsassign ... done successfully.
Executing test function test_subset ... done successfully.
Executing test function test_summary ... done successfully.
Executing test function test_unary_minus ... Error in -nanotime(1) : unary '-' is not defined for "nanotime" objects
done successfully.
Executing test function test_unary_plus ... Error in -nanotime(1) : unary '-' is not defined for "nanotime" objects
done successfully.
Executing test function test_Complex ... Error in Arg(nanotime(1)) : non-numeric argument to function
done successfully.
Executing test function test_Logic ... Note: method with signature 'nanotime#ANY' chosen for function '&',
target signature 'nanotime#nanotime'.
"ANY#nanotime" would also be valid
Error in nanotime(1) & nanotime(1) :
operations are possible only for numeric, logical or complex types
Error in nanotime(1) & as.integer64(1) :
operations are possible only for numeric, logical or complex types
Error in nanotime(1) & TRUE :
operations are possible only for numeric, logical or complex types
Error in as.integer64(1) & nanotime(1) :
operations are possible only for numeric, logical or complex types
Error in 1L & nanotime(1) :
operations are possible only for numeric, logical or complex types
Error in FALSE & nanotime(1) :
operations are possible only for numeric, logical or complex types
done successfully.
Executing test function test_Math ... Error in abs(nanotime(1)) : non-numeric argument to mathematical function
done successfully.
Executing test function test_Math2 ... Error in round(new("nanotime", .S3Class = "integer64", structure(4.94065645841247e-324, class = "integer64")), :
non-numeric argument to mathematical function
done successfully.
Executing test function test_Summary ... Error in sum(new("nanotime", .S3Class = "integer64", structure(4.94065645841247e-324, class = "integer64")), :
invalid 'type' (nanotime) of argument
done successfully.
Executing test function test_character+nanotime ... Error in "A" + nanotime(0) : invalid operand types
done successfully.
Executing test function test_character-nanotime ... Error in "A" - nanotime(0) : invalid operand types
done successfully.
Executing test function test_compare_ANY_nanotime ... done successfully.
Executing test function test_compare_nanotime_ANY ... done successfully.
Executing test function test_integer+nanotime ... done successfully.
Executing test function test_nanotime+character ... Error in nanotime(0) + "A" : invalid operand types
done successfully.
Executing test function test_nanotime+integer ... done successfully.
Executing test function test_nanotime+integer64 ... done successfully.
Executing test function test_nanotime+nanotime ... Error in nanotime(1) + nanotime(0) : invalid operand types
done successfully.
Executing test function test_nanotime+numeric ... done successfully.
Executing test function test_nanotime-character ... Error in nanotime(0) - "A" : invalid operand types
done successfully.
Executing test function test_nanotime-integer ... done successfully.
Executing test function test_nanotime-integer64 ... done successfully.
Executing test function test_nanotime-nanotime ... done successfully.
Executing test function test_numeric+nanotime ... done successfully.
Executing test function test_numeric-nanotime ... Error in 1 - nanotime(0) : invalid operand types
done successfully.
Executing test function test_zoo ...
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Timing stopped at: 0.025 0.001 0.026
Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 2017-02-06T03:36:10.626159000+00:00
done successfully.
RUNIT TEST PROTOCOL -- Mon Apr 16 18:25:45 2018
***********************************************
Number of test functions: 64
Number of errors: 3
Number of failures: 7
1 Test Suite :
nanotime Unit Tests - 64 test functions, 3 errors, 7 failures
FAILURE in test_format_fmt_from_options: Error in checkEquals(format(a), a_ny) : 1 string mismatch
FAILURE in test_format_fmt_from_parameter: Error in checkEquals(format(a), a_ny) : 1 string mismatch
FAILURE in test_format_na: Error in checkEquals(f, exp) : 2 string mismatches
FAILURE in test_format_tz: Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
1 string mismatch
FAILURE in test_format_tz_from_options: Error in checkEquals(format(a), a_ny) : 1 string mismatch
FAILURE in test_format_tzone: Error in checkEquals(format(a), a_ny) : 1 string mismatch
FAILURE in test_nanotime_character: Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
'is.NA' value mismatch: 1 in current 0 in target
ERROR in test_nanotime_character_keep_names: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 1970-01-01T00:00:00.000000001+00:00
ERROR in test_nanotime_matrix: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 1970-01-11T00:00:00.987654321+00:00
ERROR in test_zoo: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 2017-02-06T03:36:10.626159000+00:00
Details
***************************
Test Suite: nanotime Unit Tests
Test function regexp: ^[Tt]est+
Test file regexp: ^test_.+\.[rR]$
Involved directory:
/home/ripley/R/Lib32/nanotime/unitTests
---------------------------
Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_data.frame.R
test_data_frame_cbind: (1 checks) ... OK (0.21 seconds)
test_data_frame_constructor: (2 checks) ... OK (0.02 seconds)
test_data_frame_rbind: (1 checks) ... OK (0.03 seconds)
---------------------------
Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_nanotime.R
test_ANY_Logic_nano: (1 checks) ... OK (0.01 seconds)
test_ANY_minus_nano: (1 checks) ... OK (0 seconds)
test_ANY_plus_nano: (1 checks) ... OK (0 seconds)
test_Math2_nano: (1 checks) ... OK (0 seconds)
test_Math_nano: (1 checks) ... OK (0 seconds)
test_as_Date: (1 checks) ... OK (0.01 seconds)
test_as_POSIXct: (3 checks) ... OK (0.02 seconds)
test_binary_mul: (1 checks) ... OK (0.01 seconds)
test_c: (2 checks) ... OK (0 seconds)
test_format_default: (3 checks) ... OK (0.01 seconds)
test_format_fmt_default: (1 checks) ... OK (0 seconds)
test_format_fmt_from_options: FAILURE !! (check number 1)
Error in checkEquals(format(a), a_ny) : 1 string mismatch
test_format_fmt_from_parameter: FAILURE !! (check number 1)
Error in checkEquals(format(a), a_ny) : 1 string mismatch
test_format_na: FAILURE !! (check number 1)
Error in checkEquals(f, exp) : 2 string mismatches
test_format_tz: FAILURE !! (check number 1)
Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
1 string mismatch
test_format_tz_from_options: FAILURE !! (check number 1)
Error in checkEquals(format(a), a_ny) : 1 string mismatch
test_format_tzone: FAILURE !! (check number 1)
Error in checkEquals(format(a), a_ny) : 1 string mismatch
test_is.na: (2 checks) ... OK (0 seconds)
test_nano_Logic_ANY: (1 checks) ... OK (0 seconds)
test_nano_div_ANY: (1 checks) ... OK (0 seconds)
test_nano_minus_ANY: (1 checks) ... OK (0 seconds)
test_nano_mul_ANY: (1 checks) ... OK (0 seconds)
test_nano_mul_nano: (1 checks) ... OK (0 seconds)
test_nano_plus_ANY: (1 checks) ... OK (0 seconds)
test_nanotime_Date: (1 checks) ... OK (0.01 seconds)
test_nanotime_POSIXct: (1 checks) ... OK (0.01 seconds)
test_nanotime_POSIXct_keep_names: (1 checks) ... OK (0.01 seconds)
test_nanotime_POSIXlt: (1 checks) ... OK (0.01 seconds)
test_nanotime_POSIXlt_keep_names: (1 checks) ... OK (0.01 seconds)
test_nanotime_character: FAILURE !! (check number 3)
Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
'is.NA' value mismatch: 1 in current 0 in target
test_nanotime_character_keep_names: ERROR !!
Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 1970-01-01T00:00:00.000000001+00:00
test_nanotime_generic: (2 checks) ... OK (0 seconds)
test_nanotime_matrix: ERROR !!
Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 1970-01-11T00:00:00.987654321+00:00
test_nanotime_numeric_keep_names: (1 checks) ... OK (0 seconds)
test_subsassign: (2 checks) ... OK (0.01 seconds)
test_subset: (2 checks) ... OK (0 seconds)
test_summary: (2 checks) ... OK (0.02 seconds)
test_unary_minus: (1 checks) ... OK (0 seconds)
test_unary_plus: (1 checks) ... OK (0 seconds)
---------------------------
Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_ops.R
test_Complex: (1 checks) ... OK (0 seconds)
test_Logic: (6 checks) ... OK (0.02 seconds)
test_Math: (1 checks) ... OK (0 seconds)
test_Math2: (1 checks) ... OK (0 seconds)
test_Summary: (4 checks) ... OK (0.02 seconds)
test_character+nanotime: (1 checks) ... OK (0 seconds)
test_character-nanotime: (1 checks) ... OK (0 seconds)
test_compare_ANY_nanotime: (7 checks) ... OK (0.01 seconds)
test_compare_nanotime_ANY: (9 checks) ... OK (0.04 seconds)
test_integer+nanotime: (2 checks) ... OK (0.01 seconds)
test_nanotime+character: (1 checks) ... OK (0 seconds)
test_nanotime+integer: (2 checks) ... OK (0.01 seconds)
test_nanotime+integer64: (2 checks) ... OK (0.01 seconds)
test_nanotime+nanotime: (1 checks) ... OK (0 seconds)
test_nanotime+numeric: (2 checks) ... OK (0.01 seconds)
test_nanotime-character: (1 checks) ... OK (0 seconds)
test_nanotime-integer: (2 checks) ... OK (0.01 seconds)
test_nanotime-integer64: (2 checks) ... OK (0 seconds)
test_nanotime-nanotime: (2 checks) ... OK (0 seconds)
test_numeric+nanotime: (2 checks) ... OK (0.01 seconds)
test_numeric-nanotime: (1 checks) ... OK (0 seconds)
---------------------------
Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_zoo.R
test_zoo: ERROR !!
Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
Parse error on 2017-02-06T03:36:10.626159000+00:00
[1] 7
Error: TEST FAILED!
Execution halted
Flavor: r-patched-solaris-x86
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: NOTE: 1, OK: 11
Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'random-essay.tex' failed.
LaTeX errors:
! LaTeX Error: File `vmargin.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.4 \setpapersize
{USletter} % use USletter paper^^M
! ==> Fatal error occurred, no output PDF file produced!
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
Flavor: r-oldrel-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: NOTE: 7, OK: 4
Version: 0.3.8
Check: installed package size
Result: NOTE
installed size is 15.0Mb
sub-directories of 1Mb or more:
blp 7.1Mb
libs 7.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Current CRAN status: NOTE: 12
Version: 0.12.16
Check: foreign function calls
Result: NOTE
Registration problem:
symbol ‘symbol’ in the local frame:
.Call(symbol)
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.12.16
Check: installed package size
Result: NOTE
installed size is 15.0Mb
sub-directories of 1Mb or more:
doc 2.7Mb
include 6.4Mb
libs 4.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: ERROR: 2, OK: 4
Version: 0.0.4
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Current CRAN status: ERROR: 1, WARN: 1, NOTE: 6, OK: 4
Version: 0.8.400.0.0
Check: installed package size
Result: NOTE
installed size is 7.7Mb
sub-directories of 1Mb or more:
include 5.2Mb
libs 1.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.8.400.0.0
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [177s/207s]
Running the tests in ‘tests/doRUnit.R’ failed.
Complete output:
> # Copyright (C) 2010 - 2013 Dirk Eddelbuettel, Romain Francois and Douglas Bates
> # Copyright (C) 2014 - 2017 Dirk Eddelbuettel
> # Earlier copyrights Gregor Gorjanc, Martin Maechler and Murray Stokely as detailed below
> #
> # This file is part of RcppArmadillo.
> #
> # RcppArmadillo is free software: you can redistribute it and/or
> # modify it under the terms of the GNU General Public License as
> # published by the Free Software Foundation, either version 2 of the
> # License, or (at your option) any later version.
> #
> # RcppArmadillo is distributed in the hope that it will be useful, but
> # WITHOUT ANY WARRANTY; without even the implied warranty of
> # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
> # General Public License for more details.
> #
> # You should have received a copy of the GNU General Public License
> # along with RcppArmadillo. If not, see <http://www.gnu.org/licenses/>.
>
> ## doRUnit.R --- Run RUnit tests
> ##
> ## with credits to package fUtilities in RMetrics
> ## which credits Gregor Gojanc's example in CRAN package 'gdata'
> ## as per the R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
> ## and changed further by Martin Maechler
> ## and more changes by Murray Stokely in HistogramTools
> ## and then used adapted in RProtoBuf
> ## and now used in Rcpp and here
> ##
> ## Dirk Eddelbuettel, Feb - June 2014
>
> if (requireNamespace("RUnit", quietly=TRUE) &&
+ requireNamespace("RcppArmadillo", quietly=TRUE)) {
+
+ library(RUnit)
+ library(RcppArmadillo)
+
+ ## Define tests
+ testSuite <- defineTestSuite(name="RcppArmadillo Unit Tests",
+ dirs=system.file("unitTests", package = "RcppArmadillo"),
+ testFuncRegexp = "^[Tt]est.+")
+
+ Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
+
+ tests <- runTestSuite(testSuite) # run tests
+ printTextProtocol(tests) # print results
+
+ ## Return success or failure to R CMD CHECK
+ if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
+ if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
+ if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
+ }
Executing test function test.armadillo.as_vector ... done successfully.
Executing test function test.armadillo.mat.const ... done successfully.
Executing test function test.armadillo.mat.const.ref ... done successfully.
Executing test function test.armadillo.mat.plain ... done successfully.
Executing test function test.armadillo.mat.ref ... done successfully.
Executing test function test.armadillo.sugar.ctor ... done successfully.
Executing test function test.armadillo.sugar.matrix.ctor ... done successfully.
Executing test function test.armadillo.unsigned.as ... done successfully.
Executing test function test.armadillo.vec.const ... done successfully.
Executing test function test.armadillo.vec.const.ref ... done successfully.
Executing test function test.armadillo.vec.plain ... done successfully.
Executing test function test.armadillo.vec.ref ... done successfully.
Executing test function test.as.Col ... done successfully.
Executing test function test.as.Mat ... done successfully.
Executing test function test.as.Row ... done successfully.
Executing test function test.cxmat ... done successfully.
Executing test function test.mtGlue ... done successfully.
Executing test function test.mtOp ... done successfully.
Executing test function test.sugar ... done successfully.
Executing test function test.sugar.cplx ... done successfully.
Executing test function test.wrap.Glue ... done successfully.
Executing test function test.wrap.Op ... done successfully.
Executing test function test.wrap.R ... done successfully.
Executing test function test.complex ... done successfully.
Executing test function test.cube ... done successfully.
Executing test function test.fastLm ... done successfully.
Executing test function test.fastLm.default ... done successfully.
Executing test function test.fastLm.formula ... done successfully.
Executing test function test.summary.fastLm ... done successfully.
Executing test function test.rmultinom ... Error in rmultinom(n, size, prob) : NA in probability vector
Error in rmultinomC(n, size, prob) : NAs not allowed in probability
Error in rmultinom(n, size, prob) : no positive probabilities
Error in rmultinomC(n, size, prob) : Not enough positive probabilities
done successfully.
Executing test function test.randi ... done successfully.
Executing test function test.randi.seed ... done successfully.
Executing test function test.randn ... done successfully.
Executing test function test.randn.seed ... done successfully.
Executing test function test.randu ... done successfully.
Executing test function test.randu.seed ... done successfully.
Executing test function test.sample ... done successfully.
Executing test function test.coo2dgt ... done successfully.
Executing test function test.csc2dgc ... done successfully.
Executing test function test.csr2dgr ... done successfully.
Executing test function test.other ... Error : Only CSC, COO and CSR matrices from SciPy are supported.
done successfully.
Executing test function test.as.sparse ... done successfully.
Executing test function test.sparse.addition ... done successfully.
Executing test function test.sparse.fromTriplet ... done successfully.
Executing test function test.sparse.iterators ... done successfully.
Executing test function test.sparse.list ... done successfully.
Executing test function test.sparse.multiplication ... done successfully.
Executing test function test.sparse.sqrt ... done successfully.
Executing test function test.sparse.square ... done successfully.
Executing test function test.sparse.transpose ... done successfully.
Executing test function test.speye ... done successfully.
Executing test function test.as.ddi2dgc ... done successfully.
Executing test function test.as.dgc2dgc ... dimnames(.) <- NULL: translated to
dimnames(.) <- list(NULL,NULL) <==> unname(.)
dimnames(.) <- NULL: translated to
dimnames(.) <- list(NULL,NULL) <==> unname(.)
done successfully.
Executing test function test.as.dgr2dgc ... done successfully.
Executing test function test.as.dgt2dgc ... done successfully.
Executing test function test.as.dsc2dgc ... done successfully.
Executing test function test.as.dsr2dgc ... done successfully.
Executing test function test.as.dst2dgc ... done successfully.
Executing test function test.as.dtc2dgc ... done successfully.
Executing test function test.as.dtr2dgc ... done successfully.
Executing test function test.as.dtt2dgc ... done successfully.
Executing test function test.as.ind2dgc ... done successfully.
Executing test function test.as.p2dgc ... done successfully.
Executing test function test.stop ...
*** caught segfault ***
address 0x61, cause 'memory not mapped'
Traceback:
1: .Call(<pointer: 0x7f94bf2d4990>, S)
2: asSpMat(lm)
3: eval(expr, envir = parent.frame())
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
8: try(eval(expr, envir = parent.frame()), silent = silent)
9: checkException(asSpMat(lm))
10: func()
11: system.time(func())
12: doTryCatch(return(expr), name, parentenv, handler)
13: tryCatchOne(expr, names, parentenv, handlers[[1L]])
14: tryCatchList(expr, classes, parentenv, handlers)
15: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
16: try(system.time(func()))
17: .executeTestCase(funcName, envir = sandbox, setUpFunc = .setUp, tearDownFunc = .tearDown)
18: .sourceTestFile(testFile, testSuite$testFuncRegexp)
19: runTestSuite(testSuite)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.8.400.0.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
You are recommended to install the tinytex package to build PDF.FALSE
Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Error in rmultinom(n, size, prob) : NA in probability vector
Error in rmultinomC(n, size, prob) : NAs not allowed in probability
Error in rmultinom(n, size, prob) : no positive probabilities
Error in rmultinomC(n, size, prob) : Not enough positive probabilities
Error : Only CSC, COO and CSR matrices from SciPy are supported.
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘slam’
dimnames(.) <- NULL: translated to
dimnames(.) <- list(NULL,NULL) <==> unname(.)
dimnames(.) <- NULL: translated to
dimnames(.) <- list(NULL,NULL) <==> unname(.)
*** caught segfault ***
address 0x51, cause 'memory not mapped'
Traceback:
1: .Call(<pointer: 0x7f6a76d5f990>, S)
2: asSpMat(lm)
3: eval(expr, envir = parent.frame())
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
8: try(eval(expr, envir = parent.frame()), silent = silent)
9: checkException(asSpMat(lm))
10: func()
11: system.time(func())
12: doTryCatch(return(expr), name, parentenv, handler)
13: tryCatchOne(expr, names, parentenv, handlers[[1L]])
14: tryCatchList(expr, classes, parentenv, handlers)
15: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
16: try(system.time(func()))
17: .executeTestCase(funcName, envir = sandbox, setUpFunc = .setUp, tearDownFunc = .tearDown)
18: .sourceTestFile(testFile, testSuite$testFuncRegexp)
19: runTestSuite(testSuite)
20: eval(expr, .GlobalEnv)
21: eval(expr, .GlobalEnv)
22: withVisible(eval(expr, .GlobalEnv))
23: doTryCatch(return(expr), name, parentenv, handler)
24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
25: tryCatchList(expr, classes, parentenv, handlers)
26: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
27: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
28: evalFunc(ce, options)
29: tryCatchList(expr, classes, parentenv, handlers)
30: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()})
31: driver$runcode(drobj, chunk, chunkopts)
32: utils::Sweave(...)
33: engine$weave(file, quiet = quiet, encoding = enc)
34: doTryCatch(return(expr), name, parentenv, handler)
35: tryCatchOne(expr, names, parentenv, handlers[[1L]])
36: tryCatchList(expr, classes, parentenv, handlers)
37: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
38: buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/RcppArmadillo.Rcheck/vign_test/RcppArmadillo")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.8.400.0.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
You are recommended to install the tinytex package to build PDF.FALSE
Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Error in rmultinom(n, size, prob) : NA in probability vector
Error in rmultinomC(n, size, prob) : NAs not allowed in probability
Error in rmultinom(n, size, prob) : no positive probabilities
Error in rmultinomC(n, size, prob) : Not enough positive probabilities
Error : Only CSC, COO and CSR matrices from SciPy are supported.
In file included from /data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadillo.h:39:0,
from sparse.cpp:23:
/data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h: In instantiation of ‘Rcpp::List Rcpp::simple_triplet_matrix(const arma::SpMat<eT>&) [with T = double; Rcpp::List = Rcpp::Vector<19>]’:
sparse.cpp:31:65: required from here
/data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h:43:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int cp=1, ie=0; ie < sm.n_nonzero; ie++) {
~~~^~~~~~~~~~~~~~
/data/gannet/ripley/R/packages/tests-devel/RcppArmadillo.Rcheck/RcppArmadillo/include/RcppArmadilloSugar.h:44:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (; p[cp] <= ie && cp < sm.n_cols; cp++)
~~~^~~~~~~~~~~
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘slam’
dimnames(.) <- NULL: translated to
dimnames(.) <- list(NULL,NULL) <==> unname(.)
dimnames(.) <- NULL: translated to
dimnames(.) <- list(NULL,NULL) <==> unname(.)
Error in asSpMat(lm) : lgCMatrix is not supported.
Error in asSpMat(L) : lgTMatrix is not supported.
dimnames(.) <- NULL: translated to
dimnames(.) <- list(NULL,NULL) <==> unname(.)
Error in asSpMat(nm) : ngCMatrix is not supported.
Error in asSpMat(ngt) : ngTMatrix is not supported.
Error in asSpMat(nM) : ntTMatrix is not supported.
Error in asSpMat(nsc) : nsCMatrix is not supported.
Error in asSpMat(ldi) : ldiMatrix is not supported.
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'RcppArmadillo-unitTests.tex' failed.
LaTeX errors:
! LaTeX Error: File `vmargin.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.7 \setmargrb
{0.75in}{0.75in}{0.75in}{0.75in}^^M
! ==> Fatal error occurred, no output PDF file produced!
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 8, OK: 4
Version: 0.2.3
Check: compiled code
Result: NOTE
File ‘RcppBDT/libs/RcppBDT.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.3
Check: installed package size
Result: NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
libs 8.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64
Current CRAN status: ERROR: 1, OK: 11
Version: 0.2.3
Check: examples
Result: ERROR
Running examples in ‘RcppCCTZ-Ex.R’ failed
The error most likely occurred in:
> ### Name: toTz
> ### Title: Shift datetime object from one timezone to another
> ### Aliases: toTz
>
> ### ** Examples
>
> toTz(Sys.time(), "America/New_York", "Europe/London")
Error in toTz(Sys.time(), "America/New_York", "Europe/London") :
Bad 'from' timezone
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.3
Check: tests
Result: ERROR
Running ‘simpleTests.R’
Running the tests in ‘tests/simpleTests.R’ failed.
Complete output:
>
> library(RcppCCTZ)
>
> ord <- "America/Chicago"
> lax <- "America/Los_Angeles"
> lga <- "America/New_York"
> htr <- "Europe/London"
> utc <- "UTC"
>
> now <- ISOdatetime(2016, 11, 29, 12, 00, 00, tz="UTC")
>
> format(toTz(now, utc, lax), tz=lax)
Error in toTz(now, utc, lax) : Bad 'to' timezone
Calls: format -> toTz
Execution halted
Flavor: r-patched-solaris-x86
Current CRAN status: OK: 12
Current CRAN status: ERROR: 1, OK: 11
Version: 0.1.2
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-oldrel-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 6, OK: 6
Version: 0.1.5
Check: compiled code
Result: NOTE
File ‘RcppDE/libs/RcppDE.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: NOTE: 8, OK: 4
Version: 0.3.3.4.0
Check: installed package size
Result: NOTE
installed size is 32.1Mb
sub-directories of 1Mb or more:
include 7.9Mb
libs 23.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Current CRAN status: NOTE: 6, OK: 6
Version: 0.1.8
Check: compiled code
Result: NOTE
File ‘RcppExamples/libs/RcppExamples.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: ERROR: 1, NOTE: 6, OK: 2
Version: 0.0.2
Check: compiled code
Result: NOTE
File ‘RcppGetconf/libs/RcppGetconf.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.0.2
Check: examples
Result: ERROR
Running examples in ‘RcppGetconf-Ex.R’ failed
The error most likely occurred in:
> ### Name: getAll
> ### Title: Return all System Configuration Settings
> ### Aliases: getAll
>
> ### ** Examples
>
> head(getAll(), 30)
Error in getAll() : Memory allocation error
Calls: head -> getAll
Execution halted
Flavor: r-patched-solaris-x86
Current CRAN status: ERROR: 4, WARN: 3, OK: 5
Version: 0.3.3
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [132s/149s]
Running the tests in ‘tests/doRUnit.R’ failed.
Complete output:
> ## doRUnit.R --- Run RUnit tests
> ##
> ## with credits to package fUtilities in RMetrics
> ## which credits Gregor Gojanc's example in CRAN package 'gdata'
> ## as per the (now deceased) R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
> ## and changed further by Martin Maechler
> ## and usage across several Rcpp* package
> ## and more changes by Murray Stokely in HistogramTools
> ##
> ## Dirk Eddelbuettel, 2010 - 2017
>
> if (requireNamespace("RUnit", quietly=TRUE) &&
+ requireNamespace("RcppGSL", quietly=TRUE)) {
+
+ library(RUnit)
+ library(RcppGSL)
+
+ ## Set a seed to make the test deterministic
+ set.seed(42)
+
+ ## Define tests
+ testSuite <- defineTestSuite(name="RcppGSL Unit Tests",
+ dirs=system.file("unitTests", package = "RcppGSL"),
+ testFuncRegexp = "^[Tt]est.+")
+
+ Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
+
+ tests <- runTestSuite(testSuite) # run tests
+ printTextProtocol(tests) # print results
+
+ ## Return success or failure to R CMD CHECK
+ if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
+ if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
+ if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
+
+ }
Executing test function test.client.package ... * checking for file ‘RcppGSLExample/DESCRIPTION’ ... OK
* preparing ‘RcppGSLExample’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘RcppGSLExample_0.0.3.tar.gz’
* installing *source* package ‘RcppGSLExample’ ...
checking for gsl-config... /usr/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/tmp/Rtmp5RkqrF/R.INSTALL733360366e8c/RcppGSLExample/src'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/tmp/RtmpcyenK1/RLIBS_2fc613f8ca0f/Rcpp/include" -I"/tmp/RtmpcyenK1/RLIBS_2fc613f8ca0f/RcppGSL/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/tmp/RtmpcyenK1/RLIBS_2fc613f8ca0f/Rcpp/include" -I"/tmp/RtmpcyenK1/RLIBS_2fc613f8ca0f/RcppGSL/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c colNorm.cpp -o colNorm.o
clang++ -std=gnu++98 -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o RcppGSLExample.so RcppExports.o colNorm.o -lgsl -lgslcblas -lm
make[1]: Leaving directory '/tmp/Rtmp5RkqrF/R.INSTALL733360366e8c/RcppGSLExample/src'
make[1]: Entering directory '/tmp/Rtmp5RkqrF/R.INSTALL733360366e8c/RcppGSLExample/src'
make[1]: Leaving directory '/tmp/Rtmp5RkqrF/R.INSTALL733360366e8c/RcppGSLExample/src'
installing to /tmp/Rtmp0k5xU1/file720a7dcfdc12/templib/RcppGSLExample/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RcppGSLExample)
Loading required package: Rcpp
Attaching package: 'Rcpp'
The following object is masked from 'package:RcppGSL':
LdFlags
Loading required package: RcppGSLExample
done successfully.
Executing test function test.fastLm ... done successfully.
Executing test function test.fastLm.default ... done successfully.
Executing test function test.fastLm.formula ... done successfully.
Executing test function test.summary.fastLm ... done successfully.
Executing test function test.gsl.RcppGSL.matrix.indexing ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.matrix.view.indexing ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.indexing ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.iterating ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.iterator.transform ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.view.iterating ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.matrix ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.matrix.input.SEXP ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.matrix.view ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector.input.SEXP ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector.view ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector.wrappers ... gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Entering directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
clang++ -std=gnu++98 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
make[1]: Leaving directory '/tmp/Rtmp0k5xU1/sourceCpp-x86_64-pc-linux-gnu-0.12.16/sourcecpp_720a6f44851b'
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
RUNIT TEST PROTOCOL -- Sat Apr 21 11:08:43 2018
***********************************************
Number of test functions: 19
Number of errors: 14
Number of failures: 0
1 Test Suite :
RcppGSL Unit Tests - 19 test functions, 14 errors, 0 failures
ERROR in .setUp (before test.gsl.RcppGSL.matrix.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.matrix.view.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector): Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.indexing): Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.iterator.transform): Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.view.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.matrix): Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.matrix.input.SEXP): Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.matrix.view): Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector): Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector.input.SEXP): Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector.view): Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector.wrappers): Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Details
***************************
Test Suite: RcppGSL Unit Tests
Test function regexp: ^[Tt]est.+
Test file regexp: ^runit.+\.[rR]$
Involved directory:
/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests
---------------------------
Test file: /data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/runit.client.package.R
test.client.package: (1 checks) ... OK (17.33 seconds)
---------------------------
Test file: /data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/runit.fastLm.R
test.fastLm: (3 checks) ... OK (0.02 seconds)
test.fastLm.default: (5 checks) ... OK (0.01 seconds)
test.fastLm.formula: (5 checks) ... OK (0.02 seconds)
test.summary.fastLm: (12 checks) ... OK (0.05 seconds)
---------------------------
Test file: /data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/runit.gsl.R
.setUp (before test.gsl.RcppGSL.matrix.indexing): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.matrix.view.indexing): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.indexing): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.iterating): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.iterator.transform): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.view.iterating): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.matrix): ERROR !!
Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.matrix.input.SEXP): ERROR !!
Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.matrix.view): ERROR !!
Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector): ERROR !!
Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.input.SEXP): ERROR !!
Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.view): ERROR !!
Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.wrappers): ERROR !!
Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Error: TEST HAD ERRORS!
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
You are recommended to install the tinytex package to build PDF.FALSE
Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Loading required package: RcppGSL
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
You are recommended to install the tinytex package to build PDF.FALSE
File::Path version 2.08 required--this is only version 1.08 at D:\Compiler\texmf\scripts\latexmk\perl\latexmk.pl line 122.
BEGIN failed--compilation aborted at D:\Compiler\texmf\scripts\latexmk\perl\latexmk.pl line 122.
Warning: The LaTeX package latexmk was not correctly installed.
File::Path version 2.08 required--this is only version 1.08 at D:\Compiler\texmf\scripts\latexmk\perl\latexmk.pl line 122.
BEGIN failed--compilation aborted at D:\Compiler\texmf\scripts\latexmk\perl\latexmk.pl line 122.
Warning in shell("latexmk -v") :
'latexmk -v' execution failed with error code 255
File::Path version 2.08 required--this is only version 1.08 at D:\Compiler\texmf\scripts\latexmk\perl\latexmk.pl line 122.
BEGIN failed--compilation aborted at D:\Compiler\texmf\scripts\latexmk\perl\latexmk.pl line 122.
This is BibTeX, Version 0.99d (MiKTeX 2.9)
The top-level auxiliary file: RcppGSL-intro.aux
I couldn't open database file Rcpp.bib
---line 151 of file RcppGSL-intro.aux
: \bibdata{Rcpp
: }
I'm skipping whatever remains of this command
The style file: jss.bst
I found no database files---while reading file RcppGSL-intro.aux
Warning--I didn't find a database entry for "GSL"
Warning--I didn't find a database entry for "JSS:Rcpp"
Warning--I didn't find a database entry for "Eddelbuettel:2013:Rcpp"
Warning--I didn't find a database entry for "CRAN:Rcpp"
Warning--I didn't find a database entry for "R:Main"
Warning--I didn't find a database entry for "CRAN:RcppArmadillo"
Warning--I didn't find a database entry for "Eddelbuettel+Sanderson:2013:RcppArmadillo"
Warning--I didn't find a database entry for "Sanderson:2010:Armadillo"
Warning--I didn't find a database entry for "CRAN:RcppEigen"
Warning--I didn't find a database entry for "JSS:RcppEigen"
Warning--I didn't find a database entry for "CRAN:inline"
Warning--I didn't find a database entry for "CRAN:Rcpp:Attributes"
(There were 2 error messages)
Error: processing vignette 'RcppGSL-intro.Rmd' failed with diagnostics:
Failed to build the bibliography via bibtex
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64
Version: 0.3.3
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [110s/238s]
Running the tests in ‘tests/doRUnit.R’ failed.
Complete output:
> ## doRUnit.R --- Run RUnit tests
> ##
> ## with credits to package fUtilities in RMetrics
> ## which credits Gregor Gojanc's example in CRAN package 'gdata'
> ## as per the (now deceased) R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
> ## and changed further by Martin Maechler
> ## and usage across several Rcpp* package
> ## and more changes by Murray Stokely in HistogramTools
> ##
> ## Dirk Eddelbuettel, 2010 - 2017
>
> if (requireNamespace("RUnit", quietly=TRUE) &&
+ requireNamespace("RcppGSL", quietly=TRUE)) {
+
+ library(RUnit)
+ library(RcppGSL)
+
+ ## Set a seed to make the test deterministic
+ set.seed(42)
+
+ ## Define tests
+ testSuite <- defineTestSuite(name="RcppGSL Unit Tests",
+ dirs=system.file("unitTests", package = "RcppGSL"),
+ testFuncRegexp = "^[Tt]est.+")
+
+ Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
+
+ tests <- runTestSuite(testSuite) # run tests
+ printTextProtocol(tests) # print results
+
+ ## Return success or failure to R CMD CHECK
+ if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
+ if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
+ if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
+
+ }
Executing test function test.client.package ... * checking for file ‘RcppGSLExample/DESCRIPTION’ ... OK
* preparing ‘RcppGSLExample’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘RcppGSLExample_0.0.3.tar.gz’
* installing *source* package ‘RcppGSLExample’ ...
checking for gsl-config... /usr/local/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/tmp/Rtmppua4wr/RLIBS_22b726245bc2/Rcpp/include" -I"/tmp/Rtmppua4wr/RLIBS_22b726245bc2/RcppGSL/include" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c RcppExports.cpp -o RcppExports.o
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/tmp/Rtmppua4wr/RLIBS_22b726245bc2/Rcpp/include" -I"/tmp/Rtmppua4wr/RLIBS_22b726245bc2/RcppGSL/include" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c colNorm.cpp -o colNorm.o
/opt/csw//bin/g++ -shared -L/usr/local/lib -L/opt/csw/lib -L/opt/developerstudio12.5/lib -o RcppGSLExample.so RcppExports.o colNorm.o -L/usr/local/lib -lgsl -lgslcblas -lm
installing to /tmp/RtmpAMaOZJ/file479d46cd52cc/templib/RcppGSLExample/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RcppGSLExample)
Loading required package: Rcpp
Attaching package: 'Rcpp'
The following object is masked from 'package:RcppGSL':
LdFlags
Loading required package: RcppGSLExample
done successfully.
Executing test function test.fastLm ... done successfully.
Executing test function test.fastLm.default ... done successfully.
Executing test function test.fastLm.formula ... done successfully.
Executing test function test.summary.fastLm ... done successfully.
Executing test function test.gsl.RcppGSL.matrix.indexing ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.matrix.view.indexing ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.indexing ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.iterating ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.iterator.transform ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.RcppGSL.vector.view.iterating ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.matrix ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.matrix.input.SEXP ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.matrix.view ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector.input.SEXP ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector.view ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Executing test function test.gsl.vector.wrappers ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
transform(_InputIterator __first, _InputIterator __last,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:72,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
from gsl.cpp:22:
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
transform(_InputIterator1 __first1, _InputIterator1 __last1,
^
/opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^
make: Fatal error: Command failed for target `gsl.o'
Current working directory /tmp/RtmpAMaOZJ/sourceCpp-i386-pc-solaris2.10-0.12.16/sourcecpp_479d699129be
/opt/csw//bin/g++ -I"/home/ripley/R/gcc/include" -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
*** Error code 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
RUNIT TEST PROTOCOL -- Mon Apr 16 00:19:38 2018
***********************************************
Number of test functions: 19
Number of errors: 14
Number of failures: 0
1 Test Suite :
RcppGSL Unit Tests - 19 test functions, 14 errors, 0 failures
ERROR in .setUp (before test.gsl.RcppGSL.matrix.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.matrix.view.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector): Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.indexing): Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.iterator.transform): Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.RcppGSL.vector.view.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.matrix): Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.matrix.input.SEXP): Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.matrix.view): Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector): Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector.input.SEXP): Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector.view): Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
ERROR in .setUp (before test.gsl.vector.wrappers): Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Details
***************************
Test Suite: RcppGSL Unit Tests
Test function regexp: ^[Tt]est.+
Test file regexp: ^runit.+\.[rR]$
Involved directory:
/home/ripley/R/Lib32/RcppGSL/unitTests
---------------------------
Test file: /home/ripley/R/Lib32/RcppGSL/unitTests/runit.client.package.R
test.client.package: (1 checks) ... OK (64.02 seconds)
---------------------------
Test file: /home/ripley/R/Lib32/RcppGSL/unitTests/runit.fastLm.R
test.fastLm: (3 checks) ... OK (0.03 seconds)
test.fastLm.default: (5 checks) ... OK (0.01 seconds)
test.fastLm.formula: (5 checks) ... OK (0.01 seconds)
test.summary.fastLm: (12 checks) ... OK (0.15 seconds)
---------------------------
Test file: /home/ripley/R/Lib32/RcppGSL/unitTests/runit.gsl.R
.setUp (before test.gsl.RcppGSL.matrix.indexing): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.matrix.view.indexing): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.indexing): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.iterating): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.iterator.transform): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.RcppGSL.vector.view.iterating): ERROR !!
Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.matrix): ERROR !!
Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.matrix.input.SEXP): ERROR !!
Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.matrix.view): ERROR !!
Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector): ERROR !!
Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.input.SEXP): ERROR !!
Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.view): ERROR !!
Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.wrappers): ERROR !!
Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Error: TEST HAD ERRORS!
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: RcppGSL
Flavor: r-patched-solaris-x86
Version: 0.3.3
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [150s/254s]
Running the tests in ‘tests/doRUnit.R’ failed.
Last 13 lines of output:
Error 1 occurred building shared library.
.setUp (before test.gsl.vector): ERROR !!
Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.input.SEXP): ERROR !!
Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.view): ERROR !!
Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.wrappers): ERROR !!
Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Error: TEST HAD ERRORS!
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.3.3
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘RcppGSL-unitTests.Rnw’
...
> if (err$nFail > 0) stop(sprintf("unit test problems: %d failures",
+ err$nFail))
> if (err$nErr > 0) stop(sprintf("unit test problems: %d errors",
+ err$nErr))
When sourcing ‘RcppGSL-unitTests.R’:
Error: unit test problems: 14 errors
Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.3.3
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
/usr/local/clang6/include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make: *** [gsl.o] Error 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/clang6/include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/clang6/include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make: *** [gsl.o] Error 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Error: processing vignette 'RcppGSL-unitTests.Rnw' failed with diagnostics:
chunk 2 (label = unitTesting)
Error in eval(expr, .GlobalEnv) : unit test problems: 14 errors
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning: running command '"bibtex" "RcppGSL-intro.aux"' had status 1
This is BibTeX, Version 0.99d (MiKTeX 2.9)
The top-level auxiliary file: RcppGSL-intro.aux
I couldn't open database file Rcpp.bib
---line 151 of file RcppGSL-intro.aux
: \bibdata{Rcpp
: }
I'm skipping whatever remains of this command
The style file: jss.bst
I found no database files---while reading file RcppGSL-intro.aux
Warning--I didn't find a database entry for "GSL"
Warning--I didn't find a database entry for "JSS:Rcpp"
Warning--I didn't find a database entry for "Eddelbuettel:2013:Rcpp"
Warning--I didn't find a database entry for "CRAN:Rcpp"
Warning--I didn't find a database entry for "R:Main"
Warning--I didn't find a database entry for "CRAN:RcppArmadillo"
Warning--I didn't find a database entry for "Eddelbuettel+Sanderson:2013:RcppArmadillo"
Warning--I didn't find a database entry for "Sanderson:2010:Armadillo"
Warning--I didn't find a database entry for "CRAN:RcppEigen"
Warning--I didn't find a database entry for "JSS:RcppEigen"
Warning--I didn't find a database entry for "CRAN:inline"
Warning--I didn't find a database entry for "CRAN:Rcpp:Attributes"
(There were 2 error messages)
Warning: running command '"bibtex" "RcppGSL-intro.aux"' had status 1
Error: processing vignette 'RcppGSL-intro.Rmd' failed with diagnostics:
Failed to build the bibliography via bibtex
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.3.3
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [86s/88s]
Running the tests in ‘tests/doRUnit.R’ failed.
Last 13 lines of output:
Error 1 occurred building shared library.
.setUp (before test.gsl.vector): ERROR !!
Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.input.SEXP): ERROR !!
Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.view): ERROR !!
Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
.setUp (before test.gsl.vector.wrappers): ERROR !!
Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Error: TEST HAD ERRORS!
Execution halted
Flavor: r-oldrel-osx-x86_64
Version: 0.3.3
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
/usr/local/clang4/bin/../include/c++/v1/algorithm:1932:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make: *** [gsl.o] Error 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
gsl.cpp:293:5: error: no matching function for call to 'transform'
std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
^~~~~~~~~~~~~~
/usr/local/clang4/bin/../include/c++/v1/algorithm:1922:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
^
/usr/local/clang4/bin/../include/c++/v1/algorithm:1932:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
^
1 error generated.
make: *** [gsl.o] Error 1
Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
Error 1 occurred building shared library.
Error: processing vignette 'RcppGSL-unitTests.Rnw' failed with diagnostics:
chunk 2 (label = unitTesting)
Error in eval(expr, .GlobalEnv) : unit test problems: 14 errors
Execution halted
Flavor: r-oldrel-osx-x86_64
Current CRAN status: ERROR: 1, NOTE: 7, OK: 4
Version: 0.2.1
Check: installed package size
Result: NOTE
installed size is 10.1Mb
sub-directories of 1Mb or more:
include 7.0Mb
libs 2.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.2.1
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-patched-solaris-x86
Current CRAN status: NOTE: 12
Version: 0.0.2
Check: pragmas in C/C++ headers and code
Result: NOTE
Files which contain pragma(s) suppressing diagnostics:
‘inst/include/ql/math/distributions/normaldistribution.hpp’
‘inst/include/ql/math/matrix.hpp’
‘inst/include/ql/math/optimization/levenbergmarquardt.hpp’
‘inst/include/ql/math/statistics/incrementalstatistics.hpp’
‘inst/include/ql/time/date.hpp’ ‘inst/include/ql/time/imm.hpp’
‘inst/include/ql/utilities/dataparsers.hpp’
‘inst/include/ql/utilities/null.hpp’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64
Version: 0.0.2
Check: installed package size
Result: NOTE
installed size is 23.1Mb
sub-directories of 1Mb or more:
include 8.9Mb
libs 14.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Current CRAN status: ERROR: 2, OK: 9
Version: 0.1.8
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Current CRAN status: NOTE: 2, OK: 10
Version: 0.2.1
Check: installed package size
Result: NOTE
installed size is 6.1Mb
sub-directories of 1Mb or more:
libs 5.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 8, OK: 4
Version: 0.1.1
Check: compiled code
Result: NOTE
File ‘RcppStreams/libs/RcppStreams.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.1
Check: installed package size
Result: NOTE
installed size is 7.6Mb
sub-directories of 1Mb or more:
libs 6.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 12
Version: 0.0.4
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: ‘methods’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.0.4
Check: compiled code
Result: NOTE
File ‘RcppXts/libs/RcppXts.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 12
Current CRAN status: ERROR: 4, OK: 4
Version: 0.1.3
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64
Version: 0.1.4
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 12
Version: 0.2.14
Check: compiled code
Result: NOTE
File ‘RInside/libs/RInside.so’:
Found ‘srand’, possibly from ‘srand’ (C)
Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
File ‘RInside/libs/RInside.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.14
Check: installed package size
Result: NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
lib 3.5Mb
libs 4.8Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.14
Check: compiled code
Result: NOTE
File 'RInside/libs/i386/RInside.dll':
Found 'srand', possibly from 'srand' (C)
Object: 'RInside.o'
File 'RInside/libs/x64/RInside.dll':
Found 'srand', possibly from 'srand' (C)
Object: 'RInside.o'
File 'RInside/libs/i386/libRInside.dll':
Found 'srand', possibly from 'srand' (C)
Object: 'RInside.o'
File 'RInside/libs/x64/libRInside.dll':
Found 'srand', possibly from 'srand' (C)
Object: 'RInside.o'
File 'RInside/libs/i386/RInside.dll':
Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
'getRUser', 'get_R_HOME'
File 'RInside/libs/x64/RInside.dll':
Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
'getRUser', 'get_R_HOME'
File 'RInside/libs/i386/libRInside.dll':
Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
'getRUser', 'get_R_HOME'
File 'RInside/libs/x64/libRInside.dll':
Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
'getRUser', 'get_R_HOME'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.14
Check: compiled code
Result: NOTE
File ‘RInside/libs/RInside.so’:
Found ‘srand’, possibly from ‘srand’ (C)
Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-solaris-x86
Version: 0.2.14
Check: compiled code
Result: NOTE
File ‘RInside/libs/RInside.so’:
Found ‘_srand’, possibly from ‘srand’ (C)
Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64
Version: 0.2.14
Check: compiled code
Result: NOTE
File ‘RInside/libs/RInside.so’:
Found ‘_srand’, possibly from ‘srand’ (C)
Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-oldrel-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 7, OK: 4
Version: 0.4.11
Check: installed package size
Result: NOTE
installed size is 9.4Mb
sub-directories of 1Mb or more:
doc 1.1Mb
libs 7.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Current CRAN status: OK: 12
Current CRAN status: ERROR: 2, WARN: 1, OK: 4
Version: 0.4.4
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.4.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:824:13: warning: this decimal constant is unsigned only in ISO C90
d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:842:13: warning: this decimal constant is unsigned only in ISO C90
d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomlosslatentmodel.hpp:84:13: warning: this decimal constant is unsigned only in ISO C90
d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:824:13: warning: this decimal constant is unsigned only in ISO C90
d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:842:13: warning: this decimal constant is unsigned only in ISO C90
d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomlosslatentmodel.hpp:84:13: warning: this decimal constant is unsigned only in ISO C90
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.4.2
Check: installed package size
Result: NOTE
installed size is 23.2Mb
sub-directories of 1Mb or more:
libs 22.8Mb
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: ERROR: 2, NOTE: 2, OK: 4
Version: 0.0.12
Check: installed package size
Result: NOTE
installed size is 24.3Mb
sub-directories of 1Mb or more:
libs 4.6Mb
test 19.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.0.12
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Current CRAN status: NOTE: 6, OK: 6
Version: 0.1.0
Check: compiled code
Result: NOTE
File ‘sanitizers/libs/sanitizers.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: NOTE: 8, OK: 4
Version: 0.1.0
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
doc 3.7Mb
rmarkdown 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Current CRAN status: NOTE: 4, OK: 8
Version: 1.1.39-1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
bin 5.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64