CRAN Package Check Results for Maintainer ‘Dirk Eddelbuettel <edd at debian.org>’

Last updated on 2017-10-21 09:50:09.

Package anytime

Current CRAN status: ERROR: 1, OK: 11

Additional issues

gcc-UBSAN

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘allFormats.R’
     Running ‘bulkTest.R’
     Running ‘gh_issue_12.R’
     Running ‘gh_issue_33.R’
     Running ‘gh_issue_5.R’
     Running ‘gh_issue_56.R’
     Running ‘gh_issues_36_51.R’
     Running ‘r_anytime.R’
     Running ‘simpleTests.R’
     Running ‘utilities.R’
     Running ‘validate.R’
    Running the tests in ‘tests/allFormats.R’ failed.
    Complete output:
     > options(digits.secs=6, width=70)
     >
     > library(anytime)
     >
     > ref <- format(as.POSIXct(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"),
     + "%Y-%m-%d %H:%M:%0S"))
     Warning messages:
     1: In strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
     unknown timezone '%Y-%m-%d %H:%M:%0S'
     2: In as.POSIXct.POSIXlt(x) : unknown timezone '%Y-%m-%d %H:%M:%0S'
     3: In strptime(x, f, tz = tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
     4: In as.POSIXct.POSIXlt(as.POSIXlt(x, tz, ...), tz, ...) :
     unknown timezone '%Y-%m-%d %H:%M:%0S'
     5: In as.POSIXlt.POSIXct(x, tz) : unknown timezone '%Y-%m-%d %H:%M:%0S'
     >
     >
     > stopifnot(ref == format(anytime(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"))))
     Error: ref == format(anytime(c("2016-09-01 10:11:12", "2016-09-01 10:11:12.345678"))) are not all TRUE
     Execution halted
    Running the tests in ‘tests/bulkTest.R’ failed.
    Complete output:
     >
     > ## we still have weird issues with some timezones so some testing needed
     > ## and while Boost Date_Time instantiates the formats relative to a locale
     > ## it remains tricky to change TZ on the fly
     >
     > library(anytime)
     >
     > verbose <- FALSE
     >
     > tzvec <- c( # courtesy of CCTZ
     + "Africa/Abidjan",
     + "Africa/Accra",
     + "Africa/Addis_Ababa",
     + "Africa/Algiers",
     + "Africa/Asmara",
     + "Africa/Asmera",
     + "Africa/Bamako",
     + "Africa/Bangui",
     + "Africa/Banjul",
     + "Africa/Bissau",
     + "Africa/Blantyre",
     + "Africa/Brazzaville",
     + "Africa/Bujumbura",
     + "Africa/Cairo",
     + "Africa/Casablanca",
     + "Africa/Ceuta",
     + "Africa/Conakry",
     + "Africa/Dakar",
     + "Africa/Dar_es_Salaam",
     + "Africa/Djibouti",
     + "Africa/Douala",
     + "Africa/El_Aaiun",
     + "Africa/Freetown",
     + "Africa/Gaborone",
     + "Africa/Harare",
     + "Africa/Johannesburg",
     + "Africa/Juba",
     + "Africa/Kampala",
     + "Africa/Khartoum",
     + "Africa/Kigali",
     + "Africa/Kinshasa",
     + "Africa/Lagos",
     + "Africa/Libreville",
     + "Africa/Lome",
     + "Africa/Luanda",
     + "Africa/Lubumbashi",
     + "Africa/Lusaka",
     + "Africa/Malabo",
     + "Africa/Maputo",
     + "Africa/Maseru",
     + "Africa/Mbabane",
     + "Africa/Mogadishu",
     + "Africa/Monrovia",
     + "Africa/Nairobi",
     + "Africa/Ndjamena",
     + "Africa/Niamey",
     + "Africa/Nouakchott",
     + "Africa/Ouagadougou",
     + "Africa/Porto-Novo",
     + "Africa/Sao_Tome",
     + "Africa/Timbuktu",
     + "Africa/Tripoli",
     + "Africa/Tunis",
     + "Africa/Windhoek",
     + "America/Adak",
     + "America/Anchorage",
     + "America/Anguilla",
     + "America/Antigua",
     + "America/Araguaina",
     + "America/Argentina/Buenos_Aires",
     + "America/Argentina/Catamarca",
     + "America/Argentina/ComodRivadavia",
     + "America/Argentina/Cordoba",
     + "America/Argentina/Jujuy",
     + "America/Argentina/La_Rioja",
     + "America/Argentina/Mendoza",
     + "America/Argentina/Rio_Gallegos",
     + "America/Argentina/Salta",
     + "America/Argentina/San_Juan",
     + "America/Argentina/San_Luis",
     + "America/Argentina/Tucuman",
     + "America/Argentina/Ushuaia",
     + "America/Aruba",
     + "America/Asuncion",
     + "America/Atikokan",
     + "America/Atka",
     + "America/Bahia",
     + "America/Bahia_Banderas",
     + "America/Barbados",
     + "America/Belem",
     + "America/Belize",
     + "America/Blanc-Sablon",
     + "America/Boa_Vista",
     + "America/Bogota",
     + "America/Boise",
     + "America/Buenos_Aires",
     + "America/Cambridge_Bay",
     + "America/Campo_Grande",
     + "America/Cancun",
     + "America/Caracas",
     + "America/Catamarca",
     + "America/Cayenne",
     + "America/Cayman",
     + "America/Chicago",
     + "America/Chihuahua",
     + "America/Coral_Harbour",
     + "America/Cordoba",
     + "America/Costa_Rica",
     + "America/Creston",
     + "America/Cuiaba",
     + "America/Curacao",
     + "America/Danmarkshavn",
     + "America/Dawson",
     + "America/Dawson_Creek",
     + "America/Denver",
     + "America/Detroit",
     + "America/Dominica",
     + "America/Edmonton",
     + "America/Eirunepe",
     + "America/El_Salvador",
     + "America/Ensenada",
     + "America/Fort_Wayne",
     + "America/Fortaleza",
     + "America/Glace_Bay",
     + "America/Godthab",
     + "America/Goose_Bay",
     + "America/Grand_Turk",
     + "America/Grenada",
     + "America/Guadeloupe",
     + "America/Guatemala",
     + "America/Guayaquil",
     + "America/Guyana",
     + "America/Halifax",
     + "America/Havana",
     + "America/Hermosillo",
     + "America/Indiana/Indianapolis",
     + "America/Indiana/Knox",
     + "America/Indiana/Marengo",
     + "America/Indiana/Petersburg",
     + "America/Indiana/Tell_City",
     + "America/Indiana/Vevay",
     + "America/Indiana/Vincennes",
     + "America/Indiana/Winamac",
     + "America/Indianapolis",
     + "America/Inuvik",
     + "America/Iqaluit",
     + "America/Jamaica",
     + "America/Jujuy",
     + "America/Juneau",
     + "America/Kentucky/Louisville",
     + "America/Kentucky/Monticello",
     + "America/Knox_IN",
     + "America/Kralendijk",
     + "America/La_Paz",
     + "America/Lima",
     + "America/Los_Angeles",
     + "America/Louisville",
     + "America/Lower_Princes",
     + "America/Maceio",
     + "America/Managua",
     + "America/Manaus",
     + "America/Marigot",
     + "America/Martinique",
     + "America/Matamoros",
     + "America/Mazatlan",
     + "America/Mendoza",
     + "America/Menominee",
     + "America/Merida",
     + "America/Metlakatla",
     + "America/Mexico_City",
     + "America/Miquelon",
     + "America/Moncton",
     + "America/Monterrey",
     + "America/Montevideo",
     + "America/Montreal",
     + "America/Montserrat",
     + "America/Nassau",
     + "America/New_York",
     + "America/Nipigon",
     + "America/Nome",
     + "America/Noronha",
     + "America/North_Dakota/Beulah",
     + "America/North_Dakota/Center",
     + "America/North_Dakota/New_Salem",
     + "America/Ojinaga",
     + "America/Panama",
     + "America/Pangnirtung",
     + "America/Paramaribo",
     + "America/Phoenix",
     + "America/Port-au-Prince",
     + "America/Port_of_Spain",
     + "America/Porto_Acre",
     + "America/Porto_Velho",
     + "America/Puerto_Rico",
     + "America/Rainy_River",
     + "America/Rankin_Inlet",
     + "America/Recife",
     + "America/Regina",
     + "America/Resolute",
     + "America/Rio_Branco",
     + "America/Rosario",
     + "America/Santa_Isabel",
     + "America/Santarem",
     + "America/Santiago",
     + "America/Santo_Domingo",
     + "America/Sao_Paulo",
     + "America/Scoresbysund",
     + "America/Shiprock",
     + "America/Sitka",
     + "America/St_Barthelemy",
     + "America/St_Johns",
     + "America/St_Kitts",
     + "America/St_Lucia",
     + "America/St_Thomas",
     + "America/St_Vincent",
     + "America/Swift_Current",
     + "America/Tegucigalpa",
     + "America/Thule",
     + "America/Thunder_Bay",
     + "America/Tijuana",
     + "America/Toronto",
     + "America/Tortola",
     + "America/Vancouver",
     + "America/Virgin",
     + "America/Whitehorse",
     + "America/Winnipeg",
     + "America/Yakutat",
     + "America/Yellowknife",
     + "Antarctica/Casey",
     + "Antarctica/Davis",
     + "Antarctica/DumontDUrville",
     + "Antarctica/Macquarie",
     + "Antarctica/Mawson",
     + "Antarctica/McMurdo",
     + "Antarctica/Palmer",
     + "Antarctica/Rothera",
     + "Antarctica/South_Pole",
     + "Antarctica/Syowa",
     + "Antarctica/Troll",
     + "Antarctica/Vostok",
     + "Arctic/Longyearbyen",
     + "Asia/Aden",
     + "Asia/Almaty",
     + "Asia/Amman",
     + "Asia/Anadyr",
     + "Asia/Aqtau",
     + "Asia/Aqtobe",
     + "Asia/Ashgabat",
     + "Asia/Ashkhabad",
     + "Asia/Baghdad",
     + "Asia/Bahrain",
     + "Asia/Baku",
     + "Asia/Bangkok",
     + "Asia/Beirut",
     + "Asia/Bishkek",
     + "Asia/Brunei",
     + "Asia/Calcutta",
     + "Asia/Chita",
     + "Asia/Choibalsan",
     + "Asia/Chongqing",
     + "Asia/Chungking",
     + "Asia/Colombo",
     + "Asia/Dacca",
     + "Asia/Damascus",
     + "Asia/Dhaka",
     + "Asia/Dili",
     + "Asia/Dubai",
     + "Asia/Dushanbe",
     + "Asia/Gaza",
     + "Asia/Harbin",
     + "Asia/Hebron",
     + "Asia/Ho_Chi_Minh",
     + "Asia/Hong_Kong",
     + "Asia/Hovd",
     + "Asia/Irkutsk",
     + "Asia/Istanbul",
     + "Asia/Jakarta",
     + "Asia/Jayapura",
     + "Asia/Jerusalem",
     + "Asia/Kabul",
     + "Asia/Kamchatka",
     + "Asia/Karachi",
     + "Asia/Kashgar",
     + "Asia/Kathmandu",
     + "Asia/Katmandu",
     + "Asia/Khandyga",
     + "Asia/Kolkata",
     + "Asia/Krasnoyarsk",
     + "Asia/Kuala_Lumpur",
     + "Asia/Kuching",
     + "Asia/Kuwait",
     + "Asia/Macao",
     + "Asia/Macau",
     + "Asia/Magadan",
     + "Asia/Makassar",
     + "Asia/Manila",
     + "Asia/Muscat",
     + "Asia/Nicosia",
     + "Asia/Novokuznetsk",
     + "Asia/Novosibirsk",
     + "Asia/Omsk",
     + "Asia/Oral",
     + "Asia/Phnom_Penh",
     + "Asia/Pontianak",
     + "Asia/Pyongyang",
     + "Asia/Qatar",
     + "Asia/Qyzylorda",
     + "Asia/Rangoon",
     + "Asia/Riyadh",
     + "Asia/Saigon",
     + "Asia/Sakhalin",
     + "Asia/Samarkand",
     + "Asia/Seoul",
     + "Asia/Shanghai",
     + "Asia/Singapore",
     + "Asia/Srednekolymsk",
     + "Asia/Taipei",
     + "Asia/Tashkent",
     + "Asia/Tbilisi",
     + "Asia/Tehran",
     + "Asia/Tel_Aviv",
     + "Asia/Thimbu",
     + "Asia/Thimphu",
     + "Asia/Tokyo",
     + "Asia/Ujung_Pandang",
     + "Asia/Ulaanbaatar",
     + "Asia/Ulan_Bator",
     + "Asia/Urumqi",
     + "Asia/Ust-Nera",
     + "Asia/Vientiane",
     + "Asia/Vladivostok",
     + "Asia/Yakutsk",
     + "Asia/Yekaterinburg",
     + "Asia/Yerevan",
     + "Atlantic/Azores",
     + "Atlantic/Bermuda",
     + "Atlantic/Canary",
     + "Atlantic/Cape_Verde",
     + "Atlantic/Faeroe",
     + "Atlantic/Faroe",
     + "Atlantic/Jan_Mayen",
     + "Atlantic/Madeira",
     + "Atlantic/Reykjavik",
     + "Atlantic/South_Georgia",
     + "Atlantic/St_Helena",
     + "Atlantic/Stanley",
     + "Australia/ACT",
     + "Australia/Adelaide",
     + "Australia/Brisbane",
     + "Australia/Broken_Hill",
     + "Australia/Canberra",
     + "Australia/Currie",
     + "Australia/Darwin",
     + "Australia/Eucla",
     + "Australia/Hobart",
     + "Australia/LHI",
     + "Australia/Lindeman",
     + "Australia/Lord_Howe",
     + "Australia/Melbourne",
     + "Australia/NSW",
     + "Australia/North",
     + "Australia/Perth",
     + "Australia/Queensland",
     + "Australia/South",
     + "Australia/Sydney",
     + "Australia/Tasmania",
     + "Australia/Victoria",
     + "Australia/West",
     + "Australia/Yancowinna",
     + "Brazil/Acre",
     + "Brazil/DeNoronha",
     + "Brazil/East",
     + "Brazil/West",
     + "CET",
     + "CST6CDT",
     + "Canada/Atlantic",
     + "Canada/Central",
     + "Canada/East-Saskatchewan",
     + "Canada/Eastern",
     + "Canada/Mountain",
     + "Canada/Newfoundland",
     + "Canada/Pacific",
     + "Canada/Saskatchewan",
     + "Canada/Yukon",
     + "Chile/Continental",
     + "Chile/EasterIsland",
     + "Cuba",
     + "EET",
     + "EST",
     + "EST5EDT",
     + "Egypt",
     + "Eire",
     + "Etc/GMT",
     + "Etc/GMT+0",
     + "Etc/GMT+1",
     + "Etc/GMT+10",
     + "Etc/GMT+11",
     + "Etc/GMT+12",
     + "Etc/GMT+2",
     + "Etc/GMT+3",
     + "Etc/GMT+4",
     + "Etc/GMT+5",
     + "Etc/GMT+6",
     + "Etc/GMT+7",
     + "Etc/GMT+8",
     + "Etc/GMT+9",
     + "Etc/GMT-0",
     + "Etc/GMT-1",
     + "Etc/GMT-10",
     + "Etc/GMT-11",
     + "Etc/GMT-12",
     + "Etc/GMT-13",
     + "Etc/GMT-14",
     + "Etc/GMT-2",
     + "Etc/GMT-3",
     + "Etc/GMT-4",
     + "Etc/GMT-5",
     + "Etc/GMT-6",
     + "Etc/GMT-7",
     + "Etc/GMT-8",
     + "Etc/GMT-9",
     + "Etc/GMT0",
     + "Etc/Greenwich",
     + "Etc/UCT",
     + "Etc/UTC",
     + "Etc/Universal",
     + "Etc/Zulu",
     + "Europe/Amsterdam",
     + "Europe/Andorra",
     + "Europe/Athens",
     + "Europe/Belfast",
     + "Europe/Belgrade",
     + "Europe/Berlin",
     + "Europe/Bratislava",
     + "Europe/Brussels",
     + "Europe/Bucharest",
     + "Europe/Budapest",
     + "Europe/Busingen",
     + "Europe/Chisinau",
     + "Europe/Copenhagen",
     + "Europe/Dublin",
     + "Europe/Gibraltar",
     + "Europe/Guernsey",
     + "Europe/Helsinki",
     + "Europe/Isle_of_Man",
     + "Europe/Istanbul",
     + "Europe/Jersey",
     + "Europe/Kaliningrad",
     + "Europe/Kiev",
     + "Europe/Lisbon",
     + "Europe/Ljubljana",
     + "Europe/London",
     + "Europe/Luxembourg",
     + "Europe/Madrid",
     + "Europe/Malta",
     + "Europe/Mariehamn",
     + "Europe/Minsk",
     + "Europe/Monaco",
     + "Europe/Moscow",
     + "Europe/Nicosia",
     + "Europe/Oslo",
     + "Europe/Paris",
     + "Europe/Podgorica",
     + "Europe/Prague",
     + "Europe/Riga",
     + "Europe/Rome",
     + "Europe/Samara",
     + "Europe/San_Marino",
     + "Europe/Sarajevo",
     + "Europe/Simferopol",
     + "Europe/Skopje",
     + "Europe/Sofia",
     + "Europe/Stockholm",
     + "Europe/Tallinn",
     + "Europe/Tirane",
     + "Europe/Tiraspol",
     + "Europe/Uzhgorod",
     + "Europe/Vaduz",
     + "Europe/Vatican",
     + "Europe/Vienna",
     + "Europe/Vilnius",
     + "Europe/Volgograd",
     + "Europe/Warsaw",
     + "Europe/Zagreb",
     + "Europe/Zaporozhye",
     + "Europe/Zurich",
     + "GB",
     + "GB-Eire",
     + "GMT",
     + "GMT+0",
     + "GMT-0",
     + "GMT0",
     + "Greenwich",
     + "HST",
     + "Hongkong",
     + "Iceland",
     + "Indian/Antananarivo",
     + "Indian/Chagos",
     + "Indian/Christmas",
     + "Indian/Cocos",
     + "Indian/Comoro",
     + "Indian/Kerguelen",
     + "Indian/Mahe",
     + "Indian/Maldives",
     + "Indian/Mauritius",
     + "Indian/Mayotte",
     + "Indian/Reunion",
     + "Iran",
     + "Israel",
     + "Jamaica",
     + "Japan",
     + "Kwajalein",
     + "Libya",
     + "MET",
     + "MST",
     + "MST7MDT",
     + "Mexico/BajaNorte",
     + "Mexico/BajaSur",
     + "Mexico/General",
     + "NZ",
     + "NZ-CHAT",
     + "Navajo",
     + "PRC",
     + "PST8PDT",
     + "Pacific/Apia",
     + "Pacific/Auckland",
     + "Pacific/Bougainville",
     + "Pacific/Chatham",
     + "Pacific/Chuuk",
     + "Pacific/Easter",
     + "Pacific/Efate",
     + "Pacific/Enderbury",
     + "Pacific/Fakaofo",
     + "Pacific/Fiji",
     + "Pacific/Funafuti",
     + "Pacific/Galapagos",
     + "Pacific/Gambier",
     + "Pacific/Guadalcanal",
     + "Pacific/Guam",
     + "Pacific/Honolulu",
     + "Pacific/Johnston",
     + "Pacific/Kiritimati",
     + "Pacific/Kosrae",
     + "Pacific/Kwajalein",
     + "Pacific/Majuro",
     + "Pacific/Marquesas",
     + "Pacific/Midway",
     + "Pacific/Nauru",
     + "Pacific/Niue",
     + "Pacific/Norfolk",
     + "Pacific/Noumea",
     + "Pacific/Pago_Pago",
     + "Pacific/Palau",
     + "Pacific/Pitcairn",
     + "Pacific/Pohnpei",
     + "Pacific/Ponape",
     + "Pacific/Port_Moresby",
     + "Pacific/Rarotonga",
     + "Pacific/Saipan",
     + "Pacific/Samoa",
     + "Pacific/Tahiti",
     + "Pacific/Tarawa",
     + "Pacific/Tongatapu",
     + "Pacific/Truk",
     + "Pacific/Wake",
     + "Pacific/Wallis",
     + "Pacific/Yap",
     + "Poland",
     + "Portugal",
     + "ROC",
     + "ROK",
     + "Singapore",
     + "Turkey",
     + "UCT",
     + "US/Alaska",
     + "US/Aleutian",
     + "US/Arizona",
     + "US/Central",
     + "US/East-Indiana",
     + "US/Eastern",
     + "US/Hawaii",
     + "US/Indiana-Starke",
     + "US/Michigan",
     + "US/Mountain",
     + "US/Pacific",
     + "US/Pacific-New",
     + "US/Samoa",
     + "UTC",
     + "Universal",
     + "W-SU",
     + "WET",
     + "Zulu"
     + )
     >
     > fullPOSIXctEx <- function(tstr) {
     + for (tz in tzvec) {
     + ## for anytime, the returned POSIXct object has the 'target' timezone (default is local)
     + at <- format( anytime(tstr, tz=tz) )
     + ## for as.POSIXct, we give tz when we format
     + pt <- format(as.POSIXct(tstr ), tz=tz)
     + if (verbose) cat(at, " -- ", pt, " -- ", tz, "\n")
     + stopifnot(all.equal(at, pt))
     + }
     + }
     >
     > fullDateEx <- function(tstr) {
     + for (tz in tzvec) {
     + at <- format(anydate(tstr))
     + pt <- format(as.Date(tstr))
     + if (verbose) cat(at, " -- ", pt, " -- ", tz, "\n")
     + stopifnot(all.equal(at, pt))
     + }
     + }
     >
     > fullPOSIXctEx("2016-07-11 12:13:14") # test summer
     Error: at and pt are not equal:
     1 string mismatch
     Execution halted
    Running the tests in ‘tests/simpleTests.R’ failed.
    Complete output:
     >
     > options(digits.secs=6)
     >
     > library(anytime)
     >
     > refT <- as.POSIXct(as.POSIXlt(format(as.Date("2016-01-01")+0:2)))
     > refD <- as.Date("2016-01-01")+0:2
     >
     > ## Dates: Integer
     > stopifnot(refD == anydate(20160101L + 0:2))
     > stopifnot(refT == anytime(20160101L + 0:2, oldHeuristic=TRUE))
     Error: refT == anytime(20160101L + 0:2, oldHeuristic = TRUE) are not all TRUE
     Execution halted
Flavor: r-patched-solaris-x86

Package AsioHeaders

Current CRAN status: OK: 12

Package BH

Current CRAN status: NOTE: 8, OK: 4

Version: 1.65.0-1
Check: installed package size
Result: NOTE
     installed size is 141.6Mb
     sub-directories of 1Mb or more:
     include 141.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package digest

Current CRAN status: OK: 12

Package drat

Current CRAN status: OK: 12

Package gaussfacts

Current CRAN status: OK: 12

Package gcbd

Current CRAN status: WARN: 1, NOTE: 4, OK: 4

Version: 0.2.6
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gputools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gputools’
Flavors: r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in packageDescription("gputools") :
     no package 'gputools' was found
    Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
    at gcbd.Rnw:860, subscript out of bounds
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package gettz

Current CRAN status: NOTE: 6, OK: 6

Version: 0.0.3
Check: compiled code
Result: NOTE
    File ‘gettz/libs/gettz.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package gunsales

Current CRAN status: OK: 12

Package inline

Current CRAN status: OK: 12

Package littler

Current CRAN status: OK: 8

Package nanotime

Current CRAN status: ERROR: 1, OK: 11

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘POSIXt.R’
     Running ‘data.frame.R’
     Running ‘runTests.R’
     Running ‘simpleTests.R’
     Running ‘zooTests.R’
    Running the tests in ‘tests/runTests.R’ failed.
    Complete output:
     >
     > pkg <- "nanotime"
     >
     > if (!requireNamespace("RUnit", quietly = TRUE)) {
     + cat("R package 'RUnit' cannot be loaded -- no unit tests run for package", pkg, "\n")
     + } else if (!requireNamespace("nanotime", quietly = TRUE)) {
     + cat("R package 'nanotime' cannot be loaded -- no unit tests run for package", pkg, "\n")
     + } else if (!requireNamespace("bit64", quietly = TRUE)) {
     + cat("R package 'bit64' cannot be loaded -- no unit tests run for package", pkg, "\n")
     + } else {
     +
     + library(RUnit)
     + library(nanotime)
     + library(bit64)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name=paste(pkg, "Unit Tests"),
     + dirs=system.file("unitTests", package=pkg),
     + testFileRegexp = "^test_.+\\.[rR]$",
     + testFuncRegexp = "^[Tt]est+")
     +
     + ## Run tests
     + tests <- runTestSuite(testSuite)
     +
     + ## Print results
     + printTextProtocol(tests)
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) {
     + print(getErrors(tests)$nFail)
     + stop("TEST FAILED!")
     + }
     + if (getErrors(tests)$nErr > 0) {
     + print(getErrors(tests)$nErr)
     + stop("TEST HAD ERRORS!")
     + }
     + if (getErrors(tests)$nTestFunc < 1) {
     + print(getErrors(tests)$nTestFunc)
     + stop("NO TEST FUNCTIONS RUN!")
     + }
     +
     + }
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
    
    
     Executing test function test_data_frame_cbind ... done successfully.
    
    
    
     Executing test function test_data_frame_constructor ... done successfully.
    
    
    
     Executing test function test_data_frame_rbind ... done successfully.
    
    
    
     Executing test function test_ANY_Logic_nano ... Error in 1 | nanotime(1) :
     operations are possible only for numeric, logical or complex types
     done successfully.
    
    
    
     Executing test function test_ANY_minus_nano ... Error in 1 - nanotime(2) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_ANY_plus_nano ... Error in "a" + nanotime(2) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_Math2_nano ... Error in round(structure(4.94065645841247e-324, .S3Class = "integer64", class = structure("nanotime", package = "nanotime"))) :
     non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_Math_nano ... Error in sin(nanotime(1)) : non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_as_Date ... done successfully.
    
    
    
     Executing test function test_as_POSIXct ... done successfully.
    
    
    
     Executing test function test_binary_mul ... Note: method with signature 'nanotime#ANY' chosen for function '*',
     target signature 'nanotime#nanotime'.
     "ANY#nanotime" would also be valid
     Error in nanotime(1) * nanotime(2) :
     operation not defined for "nanotime" objects
     In addition: Warning messages:
     1: In check_tzones(target, current) : 'tzone' attributes are inconsistent
     2: In check_tzones(target, current) : 'tzone' attributes are inconsistent
     3: In check_tzones(target, current) : 'tzone' attributes are inconsistent
     done successfully.
    
    
    
     Executing test function test_c ... done successfully.
    
    
    
     Executing test function test_format_default ... done successfully.
    
    
    
     Executing test function test_format_fmt_default ... done successfully.
    
    
    
     Executing test function test_format_fmt_from_options ... Timing stopped at: 0.003 0 0.003
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_fmt_from_parameter ... Timing stopped at: 0.002 0 0.003
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_na ... Timing stopped at: 0.003 0 0.002
     Error in checkEquals(f, exp) : 2 string mismatches
    
     done successfully.
    
    
    
     Executing test function test_format_tz ... Timing stopped at: 0.002 0 0.002
     Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
     1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_tz_from_options ... Timing stopped at: 0.002 0 0.003
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_format_tzone ... Timing stopped at: 0.003 0 0.002
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     done successfully.
    
    
    
     Executing test function test_is.na ... done successfully.
    
    
    
     Executing test function test_nano_Logic_ANY ... Error in nanotime(1) | 1 :
     operations are possible only for numeric, logical or complex types
     done successfully.
    
    
    
     Executing test function test_nano_div_ANY ... Error in nanotime(1)/1 : operation not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_nano_minus_ANY ... Error in nanotime(1) - "a" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nano_mul_ANY ... Error in nanotime(1) * 1 : operation not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_nano_mul_nano ... Error in nanotime(1) * nanotime(1) :
     operation not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_nano_plus_ANY ... Error in nanotime(1) + "a" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime_Date ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXct ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXct_keep_names ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXlt ... done successfully.
    
    
    
     Executing test function test_nanotime_POSIXlt_keep_names ... done successfully.
    
    
    
     Executing test function test_nanotime_character ... Timing stopped at: 0.005 0.001 0.006
     Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
     'is.NA' value mismatch: 1 in current 0 in target
    
     done successfully.
    
    
    
     Executing test function test_nanotime_character_keep_names ... Timing stopped at: 0.006 0.001 0.007
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-01T00:00:00.000000001+00:00
     done successfully.
    
    
    
     Executing test function test_nanotime_generic ... done successfully.
    
    
    
     Executing test function test_nanotime_matrix ... Timing stopped at: 0.002 0 0.002
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-11T00:00:00.987654321+00:00
     done successfully.
    
    
    
     Executing test function test_nanotime_numeric_keep_names ... done successfully.
    
    
    
     Executing test function test_subsassign ... done successfully.
    
    
    
     Executing test function test_subset ... done successfully.
    
    
    
     Executing test function test_summary ... done successfully.
    
    
    
     Executing test function test_unary_minus ... Error in -nanotime(1) : unary '-' is not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_unary_plus ... Error in -nanotime(1) : unary '-' is not defined for "nanotime" objects
     done successfully.
    
    
    
     Executing test function test_Complex ... Error in Arg(nanotime(1)) : non-numeric argument to function
     done successfully.
    
    
    
     Executing test function test_Logic ... Note: method with signature 'nanotime#ANY' chosen for function '&',
     target signature 'nanotime#nanotime'.
     "ANY#nanotime" would also be valid
     Error in nanotime(1) & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     Error in nanotime(1) & as.integer64(1) :
     operations are possible only for numeric, logical or complex types
     Error in nanotime(1) & TRUE :
     operations are possible only for numeric, logical or complex types
     Error in as.integer64(1) & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     Error in 1L & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     Error in FALSE & nanotime(1) :
     operations are possible only for numeric, logical or complex types
     done successfully.
    
    
    
     Executing test function test_Math ... Error in abs(nanotime(1)) : non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_Math2 ... Error in round(structure(4.94065645841247e-324, .S3Class = "integer64", class = structure("nanotime", package = "nanotime")), :
     non-numeric argument to mathematical function
     done successfully.
    
    
    
     Executing test function test_Summary ... Error in sum(structure(4.94065645841247e-324, .S3Class = "integer64", class = structure("nanotime", package = "nanotime")), :
     invalid 'type' (nanotime) of argument
     done successfully.
    
    
    
     Executing test function test_character+nanotime ... Error in "A" + nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_character-nanotime ... Error in "A" - nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_compare_ANY_nanotime ... done successfully.
    
    
    
     Executing test function test_compare_nanotime_ANY ... done successfully.
    
    
    
     Executing test function test_integer+nanotime ... done successfully.
    
    
    
     Executing test function test_nanotime+character ... Error in nanotime(0) + "A" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime+integer ... done successfully.
    
    
    
     Executing test function test_nanotime+integer64 ... done successfully.
    
    
    
     Executing test function test_nanotime+nanotime ... Error in nanotime(1) + nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime+numeric ... done successfully.
    
    
    
     Executing test function test_nanotime-character ... Error in nanotime(0) - "A" : invalid operand types
     done successfully.
    
    
    
     Executing test function test_nanotime-integer ... done successfully.
    
    
    
     Executing test function test_nanotime-integer64 ... done successfully.
    
    
    
     Executing test function test_nanotime-nanotime ... done successfully.
    
    
    
     Executing test function test_numeric+nanotime ... done successfully.
    
    
    
     Executing test function test_numeric-nanotime ... Error in 1 - nanotime(0) : invalid operand types
     done successfully.
    
    
    
     Executing test function test_zoo ...
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
     Timing stopped at: 0.016 0.001 0.017
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 2017-02-06T03:36:10.626159000+00:00
     done successfully.
    
     RUNIT TEST PROTOCOL -- Mon Oct 9 09:28:56 2017
     ***********************************************
     Number of test functions: 64
     Number of errors: 3
     Number of failures: 7
    
    
     1 Test Suite :
     nanotime Unit Tests - 64 test functions, 3 errors, 7 failures
     FAILURE in test_format_fmt_from_options: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_format_fmt_from_parameter: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_format_na: Error in checkEquals(f, exp) : 2 string mismatches
    
     FAILURE in test_format_tz: Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
     1 string mismatch
    
     FAILURE in test_format_tz_from_options: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_format_tzone: Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     FAILURE in test_nanotime_character: Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
     'is.NA' value mismatch: 1 in current 0 in target
    
     ERROR in test_nanotime_character_keep_names: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-01T00:00:00.000000001+00:00
     ERROR in test_nanotime_matrix: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-11T00:00:00.987654321+00:00
     ERROR in test_zoo: Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 2017-02-06T03:36:10.626159000+00:00
    
    
    
     Details
     ***************************
     Test Suite: nanotime Unit Tests
     Test function regexp: ^[Tt]est+
     Test file regexp: ^test_.+\.[rR]$
     Involved directory:
     /home/ripley/R/Lib32/nanotime/unitTests
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_data.frame.R
     test_data_frame_cbind: (1 checks) ... OK (0.07 seconds)
     test_data_frame_constructor: (2 checks) ... OK (0.01 seconds)
     test_data_frame_rbind: (1 checks) ... OK (0.02 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_nanotime.R
     test_ANY_Logic_nano: (1 checks) ... OK (0 seconds)
     test_ANY_minus_nano: (1 checks) ... OK (0 seconds)
     test_ANY_plus_nano: (1 checks) ... OK (0 seconds)
     test_Math2_nano: (1 checks) ... OK (0 seconds)
     test_Math_nano: (1 checks) ... OK (0 seconds)
     test_as_Date: (1 checks) ... OK (0.01 seconds)
     test_as_POSIXct: (3 checks) ... OK (0.01 seconds)
     test_binary_mul: (1 checks) ... OK (0.01 seconds)
     test_c: (2 checks) ... OK (0 seconds)
     test_format_default: (3 checks) ... OK (0.02 seconds)
     test_format_fmt_default: (1 checks) ... OK (0 seconds)
     test_format_fmt_from_options: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_format_fmt_from_parameter: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_format_na: FAILURE !! (check number 1)
     Error in checkEquals(f, exp) : 2 string mismatches
    
     test_format_tz: FAILURE !! (check number 1)
     Error in checkEquals(format(nt, tz = "America/New_York"), a_ny) :
     1 string mismatch
    
     test_format_tz_from_options: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_format_tzone: FAILURE !! (check number 1)
     Error in checkEquals(format(a), a_ny) : 1 string mismatch
    
     test_is.na: (2 checks) ... OK (0 seconds)
     test_nano_Logic_ANY: (1 checks) ... OK (0 seconds)
     test_nano_div_ANY: (1 checks) ... OK (0 seconds)
     test_nano_minus_ANY: (1 checks) ... OK (0 seconds)
     test_nano_mul_ANY: (1 checks) ... OK (0 seconds)
     test_nano_mul_nano: (1 checks) ... OK (0 seconds)
     test_nano_plus_ANY: (1 checks) ... OK (0 seconds)
     test_nanotime_Date: (1 checks) ... OK (0.11 seconds)
     test_nanotime_POSIXct: (1 checks) ... OK (0 seconds)
     test_nanotime_POSIXct_keep_names: (1 checks) ... OK (0 seconds)
     test_nanotime_POSIXlt: (1 checks) ... OK (0.08 seconds)
     test_nanotime_POSIXlt_keep_names: (1 checks) ... OK (0 seconds)
     test_nanotime_character: FAILURE !! (check number 3)
     Error in checkEquals(nanotime("1970-01-01 00:00:01", format = "%Y-%m-%d %H:%M:%S", :
     'is.NA' value mismatch: 1 in current 0 in target
    
     test_nanotime_character_keep_names: ERROR !!
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-01T00:00:00.000000001+00:00
     test_nanotime_generic: (2 checks) ... OK (0 seconds)
     test_nanotime_matrix: ERROR !!
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 1970-01-11T00:00:00.987654321+00:00
     test_nanotime_numeric_keep_names: (1 checks) ... OK (0 seconds)
     test_subsassign: (2 checks) ... OK (0.01 seconds)
     test_subset: (2 checks) ... OK (0 seconds)
     test_summary: (2 checks) ... OK (0.02 seconds)
     test_unary_minus: (1 checks) ... OK (0 seconds)
     test_unary_plus: (1 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_ops.R
     test_Complex: (1 checks) ... OK (0 seconds)
     test_Logic: (6 checks) ... OK (0.02 seconds)
     test_Math: (1 checks) ... OK (0 seconds)
     test_Math2: (1 checks) ... OK (0 seconds)
     test_Summary: (4 checks) ... OK (0.01 seconds)
     test_character+nanotime: (1 checks) ... OK (0 seconds)
     test_character-nanotime: (1 checks) ... OK (0 seconds)
     test_compare_ANY_nanotime: (7 checks) ... OK (0.01 seconds)
     test_compare_nanotime_ANY: (9 checks) ... OK (0.04 seconds)
     test_integer+nanotime: (2 checks) ... OK (0.01 seconds)
     test_nanotime+character: (1 checks) ... OK (0 seconds)
     test_nanotime+integer: (2 checks) ... OK (0.01 seconds)
     test_nanotime+integer64: (2 checks) ... OK (0 seconds)
     test_nanotime+nanotime: (1 checks) ... OK (0 seconds)
     test_nanotime+numeric: (2 checks) ... OK (0 seconds)
     test_nanotime-character: (1 checks) ... OK (0 seconds)
     test_nanotime-integer: (2 checks) ... OK (0.01 seconds)
     test_nanotime-integer64: (2 checks) ... OK (0 seconds)
     test_nanotime-nanotime: (2 checks) ... OK (0 seconds)
     test_numeric+nanotime: (2 checks) ... OK (0 seconds)
     test_numeric-nanotime: (1 checks) ... OK (0 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/nanotime/unitTests/test_zoo.R
     test_zoo: ERROR !!
     Error in RcppCCTZ::parseDouble(x, fmt = format, tz = tz) :
     Parse error on 2017-02-06T03:36:10.626159000+00:00
     [1] 7
     Error: TEST FAILED!
     Execution halted
Flavor: r-patched-solaris-x86

Package pinp

Current CRAN status: OK: 12

Package pkgKitten

Current CRAN status: OK: 12

Package random

Current CRAN status: NOTE: 1, OK: 11

Version: 0.2.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'random-essay.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.4 \setpapersize
     {USletter} % use USletter paper^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Package RApiDatetime

Current CRAN status: OK: 12

Additional issues

rchk

Package RApiSerialize

Current CRAN status: OK: 12

Package Rblpapi

Current CRAN status: NOTE: 7, OK: 4

Version: 0.3.6
Check: installed package size
Result: NOTE
     installed size is 14.8Mb
     sub-directories of 1Mb or more:
     blp 7.1Mb
     libs 6.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package Rcpp

Current CRAN status: NOTE: 12

Additional issues

clang-UBSAN

Version: 0.12.13
Check: foreign function calls
Result: NOTE
    Registration problem:
     symbol ‘symbol’ in the local frame:
     .Call(symbol)
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.12.13
Check: installed package size
Result: NOTE
     installed size is 14.7Mb
     sub-directories of 1Mb or more:
     doc 2.7Mb
     include 6.4Mb
     libs 3.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.12.13
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Building shared library for Rcpp code chunk...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'Rcpp-unitTests.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.8 \setmargrb
     {0.75in}{0.75in}{0.75in}{0.75in}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.12.13
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: 'tools::package_native_routine_registration_skeleton'
Flavors: r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.12.13
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 356 is invalid in this locale
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 364 is invalid in this locale
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 365 is invalid in this locale
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 373 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'Rcpp-jss-2011.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.20 ^^D^^B<f5>z^^]<dd><c0>j<88>C<^^^<cf>f<b3><fb>T*@^^O¹<ba><ba><ea><fd><f7>ڵk<b9>\<8e>
     <88>j<b5>Z<b1>X<84><b3><9f>J<a5><ea><f5><ba><97><<dc>3<c6>D4^^@<a0><9b><ae><eb>...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! Undefined control sequence.
    l.30 <c3> "x<8c><de>c^^]o<ad><84><cf><e7>^^S<89>Pj<0b>9<f2><9f><eb><eb><eb>^^W.\<c0>
     <b0><8e><e3>`X^^\<c7>{<8f>k0<88><f8>^^UƘa^^X8v<a3>FO|<eb><83><c9><dd>...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! Undefined control sequence.
    l.30 ...<d1>."<86><a1><a1>!UU<e7><e7><e7><ab>ժ<b0><c2><e9>tztt<b4>T*<89><e8>[D^^^<b0><f8><86>a<f8><fd>~8\<8e>
     <e3>^^H<bb><8f><c3><fa>j<b5><8a><88>N<84>^^Q<88><cd>m
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package RcppAnnoy

Current CRAN status: OK: 12

Additional issues

gcc-UBSAN

Package RcppAPT

Current CRAN status: ERROR: 2, OK: 4

Version: 0.0.4
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppArmadillo

Current CRAN status: ERROR: 1, WARN: 1, NOTE: 6, OK: 4

Additional issues

clang-ASAN

Version: 0.8.100.1.0
Check: installed package size
Result: NOTE
     installed size is 7.4Mb
     sub-directories of 1Mb or more:
     include 5.1Mb
     libs 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.8.100.1.0
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [180s/229s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Copyright (C) 2010 - 2013 Dirk Eddelbuettel, Romain Francois and Douglas Bates
     > # Copyright (C) 2014 - 2017 Dirk Eddelbuettel
     > # Earlier copyrights Gregor Gorjanc, Martin Maechler and Murray Stokely as detailed below
     > #
     > # This file is part of RcppArmadillo.
     > #
     > # RcppArmadillo is free software: you can redistribute it and/or
     > # modify it under the terms of the GNU General Public License as
     > # published by the Free Software Foundation, either version 2 of the
     > # License, or (at your option) any later version.
     > #
     > # RcppArmadillo is distributed in the hope that it will be useful, but
     > # WITHOUT ANY WARRANTY; without even the implied warranty of
     > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     > # General Public License for more details.
     > #
     > # You should have received a copy of the GNU General Public License
     > # along with RcppArmadillo. If not, see <http://www.gnu.org/licenses/>.
     >
     > ## doRUnit.R --- Run RUnit tests
     > ##
     > ## with credits to package fUtilities in RMetrics
     > ## which credits Gregor Gojanc's example in CRAN package 'gdata'
     > ## as per the R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
     > ## and changed further by Martin Maechler
     > ## and more changes by Murray Stokely in HistogramTools
     > ## and then used adapted in RProtoBuf
     > ## and now used in Rcpp and here
     > ##
     > ## Dirk Eddelbuettel, Feb - June 2014
     >
     > if (requireNamespace("RUnit", quietly=TRUE) &&
     + requireNamespace("RcppArmadillo", quietly=TRUE)) {
     +
     + library(RUnit)
     + library(RcppArmadillo)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name="RcppArmadillo Unit Tests",
     + dirs=system.file("unitTests", package = "RcppArmadillo"),
     + testFuncRegexp = "^[Tt]est.+")
     +
     + Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
     +
     + tests <- runTestSuite(testSuite) # run tests
     + printTextProtocol(tests) # print results
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
     + if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
     + if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
     + }
    
    
     Executing test function test.armadillo.as_vector ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.mat.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.sugar.matrix.ctor ... done successfully.
    
    
    
     Executing test function test.armadillo.unsigned.as ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.const.ref ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.plain ... done successfully.
    
    
    
     Executing test function test.armadillo.vec.ref ... done successfully.
    
    
    
     Executing test function test.as.Col ... done successfully.
    
    
    
     Executing test function test.as.Mat ... done successfully.
    
    
    
     Executing test function test.as.Row ... done successfully.
    
    
    
     Executing test function test.cxmat ... done successfully.
    
    
    
     Executing test function test.mtGlue ... done successfully.
    
    
    
     Executing test function test.mtOp ... done successfully.
    
    
    
     Executing test function test.sugar ... done successfully.
    
    
    
     Executing test function test.sugar.cplx ... done successfully.
    
    
    
     Executing test function test.wrap.Glue ... done successfully.
    
    
    
     Executing test function test.wrap.Op ... done successfully.
    
    
    
     Executing test function test.wrap.R ... done successfully.
    
    
    
     Executing test function test.complex ... done successfully.
    
    
    
     Executing test function test.cube ... done successfully.
    
    
    
     Executing test function test.fastLm ... done successfully.
    
    
    
     Executing test function test.fastLm.default ... done successfully.
    
    
    
     Executing test function test.fastLm.formula ... done successfully.
    
    
    
     Executing test function test.summary.fastLm ... done successfully.
    
    
    
     Executing test function test.rmultinom ... Error in rmultinom(n, size, prob) : NA in probability vector
     Error in rmultinomC(n, size, prob) : NAs not allowed in probability
     Error in rmultinom(n, size, prob) : no positive probabilities
     Error in rmultinomC(n, size, prob) : Not enough positive probabilities
     done successfully.
    
    
    
     Executing test function test.randi ... done successfully.
    
    
    
     Executing test function test.randi.seed ... done successfully.
    
    
    
     Executing test function test.randn ... done successfully.
    
    
    
     Executing test function test.randn.seed ... done successfully.
    
    
    
     Executing test function test.randu ... done successfully.
    
    
    
     Executing test function test.randu.seed ... done successfully.
    
    
    
     Executing test function test.sample ... done successfully.
    
    
    
     Executing test function test.coo2dgt ... done successfully.
    
    
    
     Executing test function test.csc2dgc ... done successfully.
    
    
    
     Executing test function test.csr2dgr ... done successfully.
    
    
    
     Executing test function test.other ... Error : Only CSC, COO and CSR matrices from SciPy are supported.
     done successfully.
    
    
    
     Executing test function test.as.sparse ... done successfully.
    
    
    
     Executing test function test.sparse.addition ... done successfully.
    
    
    
     Executing test function test.sparse.fromTriplet ... done successfully.
    
    
    
     Executing test function test.sparse.iterators ... done successfully.
    
    
    
     Executing test function test.sparse.list ... done successfully.
    
    
    
     Executing test function test.sparse.multiplication ... done successfully.
    
    
    
     Executing test function test.sparse.sqrt ... done successfully.
    
    
    
     Executing test function test.sparse.square ... done successfully.
    
    
    
     Executing test function test.sparse.transpose ... done successfully.
    
    
    
     Executing test function test.speye ... done successfully.
    
    
    
     Executing test function test.as.ddi2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgc2dgc ... dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     dimnames(.) <- NULL: translated to
     dimnames(.) <- list(NULL,NULL) <==> unname(.)
     done successfully.
    
    
    
     Executing test function test.as.dgr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dgt2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dsr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dst2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtc2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtr2dgc ... done successfully.
    
    
    
     Executing test function test.as.dtt2dgc ... done successfully.
    
    
    
     Executing test function test.as.ind2dgc ... done successfully.
    
    
    
     Executing test function test.as.p2dgc ... done successfully.
    
    
    
     Executing test function test.stop ... *** Error in `/data/gannet/ripley/R/R-clang/bin/exec/R': double free or corruption (fasttop): 0x000000000915f820 ***
     ======= Backtrace: =========
     /lib64/libc.so.6(+0x7c8dc)[0x7f910353f8dc]
     /lib64/libc.so.6(+0x87789)[0x7f910354a789]
     /lib64/libc.so.6(cfree+0x16e)[0x7f91035500ee]
     /tmp/RtmpzWED7s/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_5f6574177c5c/sourceCpp_18.so(_Z29rcpp_exception_to_r_conditionRKN4Rcpp9exceptionE+0x31d)[0x7f90e983931d]
     /tmp/RtmpzWED7s/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_5f6574177c5c/sourceCpp_18.so(sourceCpp_17_asSpMat+0x1de)[0x7f90e983424e]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x49516d]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4977e5]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x574)[0x4c82a4]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3ff)[0x4c812f]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6f48]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x47b)[0x4c81ab]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4d9548]
     /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x327)[0x4c8057]
     /data/gannet/ripley/R/R-clang/bin/exec/R[0x4daa0f]
     ======= Memory map: ========
     00400000-006a8000 r-xp 00000000 fd:02 3673038 /data/gannet/ripley/R/R-clang/bin/exec/R
     008a7000-008a8000 r--p 002a7000 fd:02 3673038 /data/gannet/ripley/R/R-clang/bin/exec/R
     008a8000-008b3000 rw-p 002a8000 fd:02 3673038 /data/gannet/ripley/R/R-clang/bin/exec/R
     008b3000-00a04000 rw-p 00000000 00:00 0
     01f1d000-0a645000 rw-p 00000000 00:00 0 [heap]
     7f90e9829000-7f90e9856000 r-xp 00000000 00:2b 210944771 /tmp/RtmpzWED7s/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_5f6574177c5c/sourceCpp_18.so
     7f90e9856000-7f90e9a56000 ---p 0002d000 00:2b 210944771 /tmp/RtmpzWED7s/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_5f6574177c5c/sourceCpp_18.so
     7f90e9a56000-7f90e9a57000 r--p 0002d000 00:2b 210944771 /tmp/RtmpzWED7s/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_5f6574177c5c/sourceCpp_18.so
     7f90e9a57000-7f90e9a58000 rw-p 0002e000 00:2b 210944771 /tmp/RtmpzWED7s/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_5f6574177c5c/sourceCpp_18.so
     7f90e9a58000-7f90e9a98000 rw-p 00000000 00:00 0
     7f90e9a98000-7f90e9add000 r-xp 00000000 fd:01 1081351 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
     7f90e9add000-7f90e9cdd000 ---p 00045000 fd:01 1081351 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
     7f90e9cdd000-7f90e9cde000 r--p 00045000 fd:01 1081351 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
     7f90e9cde000-7f90e9ce2000 rw-p 00046000 fd:01 1081351 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
     7f90e9ce2000-7f90e9ce3000 rw-p 00000000 00:00 0
     7f90e9ce3000-7f90e9d0a000 r-xp 00000000 fd:01 1081350 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
     7f90e9d0a000-7f90e9f0a000 ---p 00027000 fd:01 1081350 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
     7f90e9f0a000-7f90e9f0b000 r--p 00027000 fd:01 1081350 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
     7f90e9f0b000-7f90e9f0e000 rw-p 00028000 fd:01 1081350 /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
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     7f90fa370000-7f90fa37b000 r-xp 00000000 fd:02 3684969 /data/gannet/ripley/R/R-clang/library/utils/libs/utils.so
     7f90fa37b000-7f90fa57a000 ---p 0000b000 fd:02 3684969 /data/gannet/ripley/R/R-clang/library/utils/libs/utils.so
     7f90fa57a000-7f90fa57b000 r--p 0000a000 fd:02 3684969 /data/gannet/ripley/R/R-clang/library/utils/libs/utils.so
     7f90fa57b000-7f90fa57c000 rw-p 0000b000 fd:02 3684969 /data/gannet/ripley/R/R-clang/library/utils/libs/utils.so
     7f90fa57c000-7f90faa4e000 rw-p 00000000 00:00 0
     7f90faa4e000-7f910127a000 r--p 00000000 fd:01 1206692 /usr/lib/locale/locale-archive
     7f910127a000-7f91013f4000 r-xp 00000000 fd:01 806727 /usr/lib64/libstdc++.so.6.0.24
     7f91013f4000-7f91015f4000 ---p 0017a000 fd:01 806727 /usr/lib64/libstdc++.so.6.0.24
     7f91015f4000-7f91015fe000 r--p 0017a000 fd:01 806727 /usr/lib64/libstdc++.so.6.0.24
     7f91015fe000-7f9101600000 rw-p 00184000 fd:01 806727 /usr/lib64/libstdc++.so.6.0.24
     7f9101600000-7f9101603000 rw-p 00000000 00:00 0
     7f9101603000-7f9102e7f000 r-xp 00000000 fd:01 825186 /usr/lib64/libicudata.so.57.1
     7f9102e7f000-7f910307e000 ---p 0187c000 fd:01 825186 /usr/lib64/libicudata.so.57.1
     7f910307e000-7f910307f000 r--p 0187b000 fd:01 825186 /usr/lib64/libicudata.so.57.1
     7f910307f000-7f9103080000 rw-p 00000000 00:00 0
     7f9103080000-7f91030a7000 r-xp 00000000 fd:01 819512 /usr/lib64/libtinfo.so.6.0
     7f91030a7000-7f91032a7000 ---p 00027000 fd:01 819512 /usr/lib64/libtinfo.so.6.0
     7f91032a7000-7f91032ab000 r--p 00027000 fd:01 819512 /usr/lib64/libtinfo.so.6.0
     7f91032ab000-7f91032ac000 rw-p 0002b000 fd:01 819512 /usr/lib64/libtinfo.so.6.0
     7f91032ac000-7f91032c2000 r-xp 00000000 fd:01 788709 /usr/lib64/libgcc_s-7-20170915.so.1
     7f91032c2000-7f91034c1000 ---p 00016000 fd:01 788709 /usr/lib64/libgcc_s-7-20170915.so.1
     7f91034c1000-7f91034c2000 r--p 00015000 fd:01 788709 /usr/lib64/libgcc_s-7-20170915.so.1
     7f91034c2000-7f91034c3000 rw-p 00016000 fd:01 788709 /usr/lib64/libgcc_s-7-20170915.so.1
     7f91034c3000-7f910368a000 r-xp 00000000 fd:01 801004 /usr/lib64/libc-2.25.so
     7f910368a000-7f910388a000 ---p 001c7000 fd:01 801004 /usr/lib64/libc-2.25.so
     7f910388a000-7f910388e000 r--p 001c7000 fd:01 801004 /usr/lib64/libc-2.25.so
     7f910388e000-7f9103890000 rw-p 001cb000 fd:01 801004 /usr/lib64/libc-2.25.so
     7f9103890000-7f9103894000 rw-p 00000000 00:00 0
     7f9103894000-7f91038ad000 r-xp 00000000 fd:01 805826 /usr/lib64/libpthread-2.25.so
     7f91038ad000-7f9103aad000 ---p 00019000 fd:01 805826 /usr/lib64/libpthread-2.25.so
     7f9103aad000-7f9103aae000 r--p 00019000 fd:01 805826 /usr/lib64/libpthread-2.25.so
     7f9103aae000-7f9103aaf000 rw-p 0001a000 fd:01 805826 /usr/lib64/libpthread-2.25.so
     7f9103aaf000-7f9103ab3000 rw-p 00000000 00:00 0
     7f9103ab3000-7f9103b59000 r-xp 00000000 fd:01 1445476 /usr/local/lib/libomp.so
     7f9103b59000-7f9103d58000 ---p 000a6000 fd:01 1445476 /usr/local/lib/libomp.so
     7f9103d58000-7f9103d59000 r--p 000a5000 fd:01 1445476 /usr/local/lib/libomp.so
     7f9103d59000-7f9103d5e000 rw-p 000a6000 fd:01 1445476 /usr/local/lib/libomp.so
     7f9103d5e000-7f9103d67000 rw-p 00000000 00:00 0
     7f9103d67000-7f9103fce000 r-xp 00000000 fd:01 825195 /usr/lib64/libicui18n.so.57.1
     7f9103fce000-7f91041ce000 ---p 00267000 fd:01 825195 /usr/lib64/libicui18n.so.57.1
     7f91041ce000-7f91041dc000 r--p 00267000 fd:01 825195 /usr/lib64/libicui18n.so.57.1
     7f91041dc000-7f91041dd000 rw-p 00275000 fd:01 825195 /usr/lib64/libicui18n.so.57.1
     7f91041dd000-7f9104370000 r-xp 00000000 fd:01 825570 /usr/lib64/libicuuc.so.57.1
     7f9104370000-7f910456f000 ---p 00193000 fd:01 825570 /usr/lib64/libicuuc.so.57.1
     7f910456f000-7f9104581000 r--p 00192000 fd:01 825570 /usr/lib64/libicuuc.so.57.1
     7f9104581000-7f9104582000 rw-p 001a4000 fd:01 825570 /usr/lib64/libicuuc.so.57.1
     7f9104582000-7f9104584000 rw-p 00000000 00:00 0
     7f9104584000-7f9104587000 r-xp 00000000 fd:01 801363 /usr/lib64/libdl-2.25.so
     7f9104587000-7f9104786000 ---p 00003000 fd:01 801363 /usr/lib64/libdl-2.25.so
     7f9104786000-7f9104787000 r--p 00002000 fd:01 801363 /usr/lib64/libdl-2.25.so
     7f9104787000-7f9104788000 rw-p 00003000 fd:01 801363 /usr/lib64/libdl-2.25.so
     7f9104788000-7f910478f000 r-xp 00000000 fd:01 806284 /usr/lib64/librt-2.25.so
     7f910478f000-7f910498e000 ---p 00007000 fd:01 806284 /usr/lib64/librt-2.25.so
     7f910498e000-7f910498f000 r--p 00006000 fd:01 806284 /usr/lib64/librt-2.25.so
     7f910498f000-7f9104990000 rw-p 00007000 fd:01 806284 /usr/lib64/librt-2.25.so
     7f9104990000-7f91049a6000 r-xp 00000000 fd:01 806132 /usr/lib64/libz.so.1.2.11
     7f91049a6000-7f9104ba5000 ---p 00016000 fd:01 806132 /usr/lib64/libz.so.1.2.11
     7f9104ba5000-7f9104ba6000 r--p 00015000 fd:01 806132 /usr/lib64/libz.so.1.2.11
     7f9104ba6000-7f9104ba7000 rw-p 00000000 00:00 0
     7f9104ba7000-7f9104bb6000 r-xp 00000000 fd:01 795450 /usr/lib64/libbz2.so.1.0.6
     7f9104bb6000-7f9104db5000 ---p 0000f000 fd:01 795450 /usr/lib64/libbz2.so.1.0.6
     7f9104db5000-7f9104db6000 r--p 0000e000 fd:01 795450 /usr/lib64/libbz2.so.1.0.6
     7f9104db6000-7f9104db7000 rw-p 0000f000 fd:01 795450 /usr/lib64/libbz2.so.1.0.6
     7f9104db7000-7f9104ddc000 r-xp 00000000 fd:01 821586 /usr/lib64/liblzma.so.5.2.3
     7f9104ddc000-7f9104fdb000 ---p 00025000 fd:01 821586 /usr/lib64/liblzma.so.5.2.3
     7f9104fdb000-7f9104fdc000 r--p 00024000 fd:01 821586 /usr/lib64/liblzma.so.5.2.3
     7f9104fdc000-7f9104fdd000 rw-p 00000000 00:00 0
     7f9104fdd000-7f910504e000 r-xp 00000000 fd:01 801872 /usr/lib64/libpcre.so.1.2.9
     7f910504e000-7f910524e000 ---p 00071000 fd:01 801872 /usr/lib64/libpcre.so.1.2.9
     7f910524e000-7f910524f000 r--p 00071000 fd:01 801872 /usr/lib64/libpcre.so.1.2.9
     7f910524f000-7f9105250000 rw-p 00072000 fd:01 801872 /usr/lib64/libpcre.so.1.2.9
     7f9105250000-7f9105293000 r-xp 00000000 fd:01 822130 /usr/lib64/libreadline.so.7.0
     7f9105293000-7f9105492000 ---p 00043000 fd:01 822130 /usr/lib64/libreadline.so.7.0
     7f9105492000-7f9105495000 r--p 00042000 fd:01 822130 /usr/lib64/libreadline.so.7.0
     7f9105495000-7f910549b000 rw-p 00045000 fd:01 822130 /usr/lib64/libreadline.so.7.0
     7f910549b000-7f910549c000 rw-p 00000000 00:00 0
     7f910549c000-7f91054da000 r-xp 00000000 fd:01 790032 /usr/lib64/libquadmath.so.0.0.0
     7f91054da000-7f91056da000 ---p 0003e000 fd:01 790032 /usr/lib64/libquadmath.so.0.0.0
     7f91056da000-7f91056db000 r--p 0003e000 fd:01 790032 /usr/lib64/libquadmath.so.0.0.0
     7f91056db000-7f91056dc000 rw-p 0003f000 fd:01 790032 /usr/lib64/libquadmath.so.0.0.0
     7f91056dc000-7f91057f1000 r-xp 00000000 fd:01 802171 /usr/lib64/libm-2.25.so
     7f91057f1000-7f91059f0000 ---p 00115000 fd:01 802171 /usr/lib64/libm-2.25.so
     7f91059f0000-7f91059f1000 r--p 00114000 fd:01 802171 /usr/lib64/libm-2.25.so
     7f91059f1000-7f91059f2000 rw-p 00115000 fd:01 802171 /usr/lib64/libm-2.25.so
     7f91059f2000-7f9105bcc000 r-xp 00000000 fd:01 789654 /usr/lib64/libgfortran.so.4.0.0
     7f9105bcc000-7f9105dcb000 ---p 001da000 fd:01 789654 /usr/lib64/libgfortran.so.4.0.0
     7f9105dcb000-7f9105dcc000 r--p 001d9000 fd:01 789654 /usr/lib64/libgfortran.so.4.0.0
     7f9105dcc000-7f9105dcd000 rw-p 001da000 fd:01 789654 /usr/lib64/libgfortran.so.4.0.0
     7f9105dcd000-7f9105dce000 rw-p 00000000 00:00 0
     7f9105dce000-7f9105df8000 r-xp 00000000 fd:02 3670843 /data/gannet/ripley/R/R-clang/lib/libRblas.so
     7f9105df8000-7f9105ff7000 ---p 0002a000 fd:02 3670843 /data/gannet/ripley/R/R-clang/lib/libRblas.so
     7f9105ff7000-7f9105ff8000 r--p 00029000 fd:02 3670843 /data/gannet/ripley/R/R-clang/lib/libRblas.so
     7f9105ff8000-7f9105ff9000 rw-p 0002a000 fd:02 3670843 /data/gannet/ripley/R/R-clang/lib/libRblas.so
     7f9105ff9000-7f9106020000 r-xp 00000000 fd:01 787472 /usr/lib64/ld-2.25.so
     7f9106047000-7f91061c9000 rw-p 00000000 00:00 0
     7f9106205000-7f9106206000 rw-p 00000000 00:00 0
     7f9106206000-7f9106216000 rwxp 00000000 00:00 0
     7f9106216000-7f910621d000 r--s 00000000 fd:01 812834 /usr/lib64/gconv/gconv-modules.cache
     7f910621d000-7f910621f000 rw-p 00000000 00:00 0
     7f910621f000-7f9106220000 r--p 00026000 fd:01 787472 /usr/lib64/ld-2.25.so
     7f9106220000-7f9106222000 rw-p 00027000 fd:01 787472 /usr/lib64/ld-2.25.so
     7ffc6f7a5000-7ffc6f7e6000 rw-p 00000000 00:00 0 [stack]
     7ffc6f7f0000-7ffc6f7f3000 r--p 00000000 00:00 0 [vvar]
     7ffc6f7f3000-7ffc6f7f5000 r-xp 00000000 00:00 0 [vdso]
     ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8.100.1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Latexmk: This is Latexmk, John Collins, 19 Jan. 2017, version: 4.52c.
    Error in rmultinom(n, size, prob) : NA in probability vector
    Error in rmultinomC(n, size, prob) : NAs not allowed in probability
    Error in rmultinom(n, size, prob) : no positive probabilities
    Error in rmultinomC(n, size, prob) : Not enough positive probabilities
    Error : Only CSC, COO and CSR matrices from SciPy are supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    
     *** caught segfault ***
    address 0x61, cause 'memory not mapped'
    
    Traceback:
     1: .Primitive(".Call")(<pointer: 0x7f37170bc070>, S)
     2: asSpMat(lm)
     3: eval(expr, envir = parent.frame())
     4: doTryCatch(return(expr), name, parentenv, handler)
     5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     6: tryCatchList(expr, classes, parentenv, handlers)
     7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
     8: try(eval(expr, envir = parent.frame()), silent = silent)
     9: inherits(try(eval(expr, envir = parent.frame()), silent = silent), "try-error")
    10: checkException(asSpMat(lm))
    11: func()
    12: system.time(func())
    13: doTryCatch(return(expr), name, parentenv, handler)
    14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    15: tryCatchList(expr, classes, parentenv, handlers)
    16: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
    17: try(system.time(func()))
    18: .executeTestCase(funcName, envir = sandbox, setUpFunc = .setUp, tearDownFunc = .tearDown)
    19: .sourceTestFile(testFile, testSuite$testFuncRegexp)
    20: runTestSuite(testSuite)
    21: eval(expr, .GlobalEnv)
    22: eval(expr, .GlobalEnv)
    23: withVisible(eval(expr, .GlobalEnv))
    24: doTryCatch(return(expr), name, parentenv, handler)
    25: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    26: tryCatchList(expr, classes, parentenv, handlers)
    27: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
    28: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
    29: evalFunc(ce, options)
    30: tryCatchList(expr, classes, parentenv, handlers)
    31: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()})
    32: driver$runcode(drobj, chunk, chunkopts)
    33: utils::Sweave(...)
    34: engine$weave(file, quiet = quiet, encoding = enc)
    35: doTryCatch(return(expr), name, parentenv, handler)
    36: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    37: tryCatchList(expr, classes, parentenv, handlers)
    38: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    39: buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/RcppArmadillo.Rcheck/vign_test/RcppArmadillo")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8.100.1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Latexmk: This is Latexmk, John Collins, 19 Jan. 2017, version: 4.52c.
    Error in rmultinom(n, size, prob) : NA in probability vector
    Error in rmultinomC(n, size, prob) : NAs not allowed in probability
    Error in rmultinom(n, size, prob) : no positive probabilities
    Error in rmultinomC(n, size, prob) : Not enough positive probabilities
    Error : Only CSC, COO and CSR matrices from SciPy are supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(lm) : lgCMatrix is not supported.
    Error in asSpMat(L) : lgTMatrix is not supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(nm) : ngCMatrix is not supported.
    Error in asSpMat(ngt) : ngTMatrix is not supported.
    Error in asSpMat(nM) : ntTMatrix is not supported.
    Error in asSpMat(nsc) : nsCMatrix is not supported.
    Error in asSpMat(ldi) : ldiMatrix is not supported.
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'RcppArmadillo-unitTests.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.7 \setmargrb
     {0.75in}{0.75in}{0.75in}{0.75in}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.8.100.1.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in asSpMat(lm) : lgCMatrix is not supported.
    Error in asSpMat(L) : lgTMatrix is not supported.
    dimnames(.) <- NULL: translated to
    dimnames(.) <- list(NULL,NULL) <==> unname(.)
    Error in asSpMat(nm) : ngCMatrix is not supported.
    Error in asSpMat(ngt) : ngTMatrix is not supported.
    Error in asSpMat(nM) : ntTMatrix is not supported.
    Error in asSpMat(nsc) : nsCMatrix is not supported.
    Error in asSpMat(ldi) : ldiMatrix is not supported.
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'RcppArmadillo-unitTests.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.7 \setmargrb
     {0.75in}{0.75in}{0.75in}{0.75in}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Package RcppBDT

Current CRAN status: NOTE: 8, OK: 4

Version: 0.2.3
Check: compiled code
Result: NOTE
    File ‘RcppBDT/libs/RcppBDT.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.3
Check: installed package size
Result: NOTE
     installed size is 8.4Mb
     sub-directories of 1Mb or more:
     libs 8.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppCCTZ

Current CRAN status: ERROR: 1, OK: 11

Version: 0.2.3
Check: examples
Result: ERROR
    Running examples in ‘RcppCCTZ-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: toTz
    > ### Title: Shift datetime object from one timezone to another
    > ### Aliases: toTz
    >
    > ### ** Examples
    >
    > toTz(Sys.time(), "America/New_York", "Europe/London")
    Error in toTz(Sys.time(), "America/New_York", "Europe/London") :
     Bad 'from' timezone
    Calls: toTz -> .Call
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘simpleTests.R’
    Running the tests in ‘tests/simpleTests.R’ failed.
    Complete output:
     >
     > library(RcppCCTZ)
     >
     > ord <- "America/Chicago"
     > lax <- "America/Los_Angeles"
     > lga <- "America/New_York"
     > htr <- "Europe/London"
     > utc <- "UTC"
     >
     > now <- ISOdatetime(2016, 11, 29, 12, 00, 00, tz="UTC")
     >
     > format(toTz(now, utc, lax), tz=lax)
     Error in toTz(now, utc, lax) : Bad 'to' timezone
     Calls: format -> toTz -> .Call
     Execution halted
Flavor: r-patched-solaris-x86

Package RcppClassic

Current CRAN status: NOTE: 1, OK: 11

Additional issues

rchk

Version: 0.9.8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: RcppClassic
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'RcppClassic-unitTests.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.4 \setmargrb
     {0.75in}{0.75in}{0.75in}{0.75in}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Package RcppClassicExamples

Current CRAN status: NOTE: 12

Version: 0.1.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘Rcpp’ ‘RcppClassic’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.RcppExample
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.1.1
Check: compiled code
Result: NOTE
    File ‘RcppClassicExamples/libs/RcppClassicExamples.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package RcppCNPy

Current CRAN status: OK: 12

Package RcppDE

Current CRAN status: NOTE: 6, OK: 6

Version: 0.1.5
Check: compiled code
Result: NOTE
    File ‘RcppDE/libs/RcppDE.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package RcppEigen

Current CRAN status: NOTE: 8, OK: 4

Version: 0.3.3.3.0
Check: installed package size
Result: NOTE
     installed size is 31.9Mb
     sub-directories of 1Mb or more:
     include 7.8Mb
     libs 23.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.3.3.3.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 420 is invalid in this locale
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 428 is invalid in this locale
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 429 is invalid in this locale
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 437 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'RcppEigen-Introduction.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.15 ....<ba><e9>&<8b><aa><9b><92>m+<a1>zg<a9>ـ*<bb><95><fa>^^DbT۲^^H~<84><89><87>)^^Y<e2>6\<8f>
     q<cc>$Ğ<b7><f8><89>+<8b>$<d8>^^F<93>Ɣ<b3><b0>f<ae><ef><9c>{<cf>...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! Undefined control sequence.
    l.15 ...^^B^^[^^_<e1>h_<9e><83><f1>W.ʯ_~<ea><95><f0>N<d3>^^Y<9a><a6>1<c6>dY<c6>vEQ\XX
     <f8>ꫯ<88>HQ^^T<fc>~<fa>駁@<e0><b3><cf>>[YY<d1>4...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! Extra }, or forgotten \endgroup.
    l.15 ...˲<aa><aa><df>~<fb><ed><ca>ʊ<a2>(+++8Ʒn<dd><da><dc><dc><ec><eb><eb><fb><e2><8b>/:<b6><a1><8b>xg'`}}}
     }}^^]<d7><cb><cb>˧<cc>츄w<98>{o^^[<fc><ed><ed>^W
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package RcppExamples

Current CRAN status: NOTE: 6, OK: 6

Version: 0.1.8
Check: compiled code
Result: NOTE
    File ‘RcppExamples/libs/RcppExamples.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package RcppGetconf

Current CRAN status: ERROR: 1, NOTE: 6, OK: 2

Version: 0.0.2
Check: compiled code
Result: NOTE
    File ‘RcppGetconf/libs/RcppGetconf.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0.2
Check: examples
Result: ERROR
    Running examples in ‘RcppGetconf-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: getAll
    > ### Title: Return all System Configuration Settings
    > ### Aliases: getAll
    >
    > ### ** Examples
    >
    > head(getAll(), 30)
    Error in getAll() : Memory allocation error
    Calls: head -> getAll -> .Call
    Execution halted
Flavor: r-patched-solaris-x86

Package RcppGSL

Current CRAN status: ERROR: 3, OK: 9

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [128s/148s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > ## doRUnit.R --- Run RUnit tests
     > ##
     > ## with credits to package fUtilities in RMetrics
     > ## which credits Gregor Gojanc's example in CRAN package 'gdata'
     > ## as per the (now deceased) R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
     > ## and changed further by Martin Maechler
     > ## and usage across several Rcpp* package
     > ## and more changes by Murray Stokely in HistogramTools
     > ##
     > ## Dirk Eddelbuettel, 2010 - 2017
     >
     > if (requireNamespace("RUnit", quietly=TRUE) &&
     + requireNamespace("RcppGSL", quietly=TRUE)) {
     +
     + library(RUnit)
     + library(RcppGSL)
     +
     + ## Set a seed to make the test deterministic
     + set.seed(42)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name="RcppGSL Unit Tests",
     + dirs=system.file("unitTests", package = "RcppGSL"),
     + testFuncRegexp = "^[Tt]est.+")
     +
     + Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
     +
     + tests <- runTestSuite(testSuite) # run tests
     + printTextProtocol(tests) # print results
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
     + if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
     + if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
     +
     + }
    
    
     Executing test function test.client.package ... * checking for file ‘RcppGSLExample/DESCRIPTION’ ... OK
     * preparing ‘RcppGSLExample’:
     * checking DESCRIPTION meta-information ... OK
     * cleaning src
     * checking for LF line-endings in source and make files and shell scripts
     * checking for empty or unneeded directories
     * building ‘RcppGSLExample_0.0.3.tar.gz’
    
     * installing *source* package ‘RcppGSLExample’ ...
     checking for gsl-config... /usr/bin/gsl-config
     configure: creating ./config.status
     config.status: creating src/Makevars
     ** libs
     make[1]: Entering directory '/tmp/RtmpHdsdaR/R.INSTALL8fa757fddd6/RcppGSLExample/src'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/tmp/RtmpD55X0b/RLIBS_90ead220c6/Rcpp/include" -I"/tmp/RtmpD55X0b/RLIBS_90ead220c6/RcppGSL/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c RcppExports.cpp -o RcppExports.o
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/tmp/RtmpD55X0b/RLIBS_90ead220c6/Rcpp/include" -I"/tmp/RtmpD55X0b/RLIBS_90ead220c6/RcppGSL/include" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c colNorm.cpp -o colNorm.o
     clang++ -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o RcppGSLExample.so RcppExports.o colNorm.o -lgsl -lgslcblas -lm
     make[1]: Leaving directory '/tmp/RtmpHdsdaR/R.INSTALL8fa757fddd6/RcppGSLExample/src'
     make[1]: Entering directory '/tmp/RtmpHdsdaR/R.INSTALL8fa757fddd6/RcppGSLExample/src'
     make[1]: Leaving directory '/tmp/RtmpHdsdaR/R.INSTALL8fa757fddd6/RcppGSLExample/src'
     installing to /tmp/Rtmp8jWXMJ/file7f333e65428/templib/RcppGSLExample/libs
     ** R
     ** preparing package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded
     * DONE (RcppGSLExample)
     Loading required package: Rcpp
    
     Attaching package: 'Rcpp'
    
     The following object is masked from 'package:RcppGSL':
    
     LdFlags
    
     Loading required package: RcppGSLExample
     done successfully.
    
    
    
     Executing test function test.fastLm ... done successfully.
    
    
    
     Executing test function test.fastLm.default ... done successfully.
    
    
    
     Executing test function test.fastLm.formula ... done successfully.
    
    
    
     Executing test function test.summary.fastLm ... done successfully.
    
    
    
     Executing test function test.gsl.RcppGSL.matrix.indexing ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.matrix.view.indexing ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.indexing ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.iterating ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.iterator.transform ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.view.iterating ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.matrix ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.matrix.input.SEXP ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.matrix.view ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector.input.SEXP ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector.view ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector.wrappers ... gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
     /usr/local/bin/../include/c++/v1/algorithm:2028:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
     transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
     ^
     /usr/local/bin/../include/c++/v1/algorithm:2038:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
     transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
     ^
     1 error generated.
     make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:166: gsl.o] Error 1
     make[1]: Target 'all' not remade because of errors.
     make[1]: Entering directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     clang++ -I/data/gannet/ripley/R/R-clang/include -DNDEBUG -I/usr/include -I"/data/gannet/ripley/R/test-clang/Rcpp/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/include" -I"/data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/cpp" -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gsl.cpp -o gsl.o
     make[1]: Leaving directory '/tmp/Rtmp8jWXMJ/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_7f32cb12793'
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     RUNIT TEST PROTOCOL -- Tue Oct 10 15:19:41 2017
     ***********************************************
     Number of test functions: 19
     Number of errors: 14
     Number of failures: 0
    
    
     1 Test Suite :
     RcppGSL Unit Tests - 19 test functions, 14 errors, 0 failures
     ERROR in .setUp (before test.gsl.RcppGSL.matrix.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.matrix.view.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector): Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.indexing): Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.iterator.transform): Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.view.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.matrix): Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.matrix.input.SEXP): Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.matrix.view): Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector): Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector.input.SEXP): Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector.view): Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector.wrappers): Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
    
     Details
     ***************************
     Test Suite: RcppGSL Unit Tests
     Test function regexp: ^[Tt]est.+
     Test file regexp: ^runit.+\.[rR]$
     Involved directory:
     /data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/runit.client.package.R
     test.client.package: (1 checks) ... OK (26.07 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/runit.fastLm.R
     test.fastLm: (3 checks) ... OK (0.03 seconds)
     test.fastLm.default: (5 checks) ... OK (0 seconds)
     test.fastLm.formula: (5 checks) ... OK (0.03 seconds)
     test.summary.fastLm: (12 checks) ... OK (0.06 seconds)
     ---------------------------
     Test file: /data/gannet/ripley/R/packages/tests-clang/RcppGSL.Rcheck/RcppGSL/unitTests/runit.gsl.R
     .setUp (before test.gsl.RcppGSL.matrix.indexing): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.matrix.view.indexing): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.indexing): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.iterating): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.iterator.transform): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.view.iterating): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.matrix): ERROR !!
     Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.matrix.input.SEXP): ERROR !!
     Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.matrix.view): ERROR !!
     Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector): ERROR !!
     Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.input.SEXP): ERROR !!
     Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.view): ERROR !!
     Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.wrappers): ERROR !!
     Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Latexmk: This is Latexmk, John Collins, 19 Jan. 2017, version: 4.52c.
    Loading required package: RcppGSL
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [110s/233s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > ## doRUnit.R --- Run RUnit tests
     > ##
     > ## with credits to package fUtilities in RMetrics
     > ## which credits Gregor Gojanc's example in CRAN package 'gdata'
     > ## as per the (now deceased) R Wiki http://wiki.r-project.org/rwiki/doku.php?id=developers:runit
     > ## and changed further by Martin Maechler
     > ## and usage across several Rcpp* package
     > ## and more changes by Murray Stokely in HistogramTools
     > ##
     > ## Dirk Eddelbuettel, 2010 - 2017
     >
     > if (requireNamespace("RUnit", quietly=TRUE) &&
     + requireNamespace("RcppGSL", quietly=TRUE)) {
     +
     + library(RUnit)
     + library(RcppGSL)
     +
     + ## Set a seed to make the test deterministic
     + set.seed(42)
     +
     + ## Define tests
     + testSuite <- defineTestSuite(name="RcppGSL Unit Tests",
     + dirs=system.file("unitTests", package = "RcppGSL"),
     + testFuncRegexp = "^[Tt]est.+")
     +
     + Sys.setenv("R_TESTS"="") # without this, we get (or used to get) unit test failures
     +
     + tests <- runTestSuite(testSuite) # run tests
     + printTextProtocol(tests) # print results
     +
     + ## Return success or failure to R CMD CHECK
     + if (getErrors(tests)$nFail > 0) stop("TEST FAILED!")
     + if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!")
     + if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!")
     +
     + }
    
    
     Executing test function test.client.package ... * checking for file ‘RcppGSLExample/DESCRIPTION’ ... OK
     * preparing ‘RcppGSLExample’:
     * checking DESCRIPTION meta-information ... OK
     * cleaning src
     * checking for LF line-endings in source and make files and shell scripts
     * checking for empty or unneeded directories
     * building ‘RcppGSLExample_0.0.3.tar.gz’
    
     * installing *source* package ‘RcppGSLExample’ ...
     checking for gsl-config... /usr/local/bin/gsl-config
     configure: creating ./config.status
     config.status: creating src/Makevars
     ** libs
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/tmp/RtmpU8aOPE/RLIBS_3d4d47281c08/Rcpp/include" -I"/tmp/RtmpU8aOPE/RLIBS_3d4d47281c08/RcppGSL/include" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c RcppExports.cpp -o RcppExports.o
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/tmp/RtmpU8aOPE/RLIBS_3d4d47281c08/Rcpp/include" -I"/tmp/RtmpU8aOPE/RLIBS_3d4d47281c08/RcppGSL/include" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c colNorm.cpp -o colNorm.o
     /opt/csw//bin/g++ -shared -L/usr/local/lib -L/opt/csw/lib -o RcppGSLExample.so RcppExports.o colNorm.o -L/usr/local/lib -lgsl -lgslcblas -lm
     installing to /tmp/RtmpJ.aO5O/file51cd7b06482/templib/RcppGSLExample/libs
     ** R
     ** preparing package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded
     * DONE (RcppGSLExample)
     Loading required package: Rcpp
    
     Attaching package: 'Rcpp'
    
     The following object is masked from 'package:RcppGSL':
    
     LdFlags
    
     Loading required package: RcppGSLExample
     done successfully.
    
    
    
     Executing test function test.fastLm ... done successfully.
    
    
    
     Executing test function test.fastLm.default ... done successfully.
    
    
    
     Executing test function test.fastLm.formula ... done successfully.
    
    
    
     Executing test function test.summary.fastLm ... done successfully.
    
    
    
     Executing test function test.gsl.RcppGSL.matrix.indexing ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.matrix.view.indexing ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.indexing ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.iterating ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.iterator.transform ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.RcppGSL.vector.view.iterating ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.matrix ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.matrix.input.SEXP ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.matrix.view ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector.input.SEXP ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector.view ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
     Executing test function test.gsl.vector.wrappers ... gsl.cpp: In function ‘Rcpp::NumericVector test_gsl_vector_iterator_transform(Rcpp::NumericVector)’:
     gsl.cpp:293:63: error: no matching function for call to ‘transform(RcppGSL::vector<double>::iterator, RcppGSL::vector<double>::iterator, Rcpp::Vector<14, Rcpp::PreserveStorage>::iterator, <unresolved overloaded function type>)’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: candidate: template<class _IIter, class _OIter, class _UnaryOperation> _OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation)
     transform(_InputIterator __first, _InputIterator __last,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4164:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: couldn't deduce template parameter ‘_UnaryOperation’
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     In file included from /opt/csw/include/c++/5.2.0/algorithm:62:0,
     from /home/ripley/R/Lib32/Rcpp/include/RcppCommon.h:63,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSLForward.h:25,
     from /home/ripley/R/Lib32/RcppGSL/include/RcppGSL.h:25,
     from gsl.cpp:22:
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: candidate: template<class _IIter1, class _IIter2, class _OIter, class _BinaryOperation> _OIter std::transform(_IIter1, _IIter1, _IIter2, _OIter, _BinaryOperation)
     transform(_InputIterator1 __first1, _InputIterator1 __last1,
     ^
     /opt/csw/include/c++/5.2.0/bits/stl_algo.h:4201:5: note: template argument deduction/substitution failed:
     gsl.cpp:293:63: note: candidate expects 5 arguments, 4 provided
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^
     make: Fatal error: Command failed for target `gsl.o'
     Current working directory /tmp/RtmpJ.aO5O/sourceCpp-i386-pc-solaris2.10-0.12.13/sourcecpp_51cd25ff6ba5
     /opt/csw//bin/g++ -I/home/ripley/R/gcc/include -DNDEBUG -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include" -I"/home/ripley/R/Lib32/RcppGSL/include" -I"/home/ripley/R/Lib32/RcppGSL/unitTests/cpp" -I/opt/csw/include -I/usr/local/include -fPIC -O2 -c gsl.cpp -o gsl.o
     *** Error code 1
     Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     RUNIT TEST PROTOCOL -- Sun Oct 8 17:38:05 2017
     ***********************************************
     Number of test functions: 19
     Number of errors: 14
     Number of failures: 0
    
    
     1 Test Suite :
     RcppGSL Unit Tests - 19 test functions, 14 errors, 0 failures
     ERROR in .setUp (before test.gsl.RcppGSL.matrix.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.matrix.view.indexing): Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector): Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.indexing): Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.iterator.transform): Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.RcppGSL.vector.view.iterating): Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.matrix): Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.matrix.input.SEXP): Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.matrix.view): Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector): Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector.input.SEXP): Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector.view): Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     ERROR in .setUp (before test.gsl.vector.wrappers): Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    
    
     Details
     ***************************
     Test Suite: RcppGSL Unit Tests
     Test function regexp: ^[Tt]est.+
     Test file regexp: ^runit.+\.[rR]$
     Involved directory:
     /home/ripley/R/Lib32/RcppGSL/unitTests
     ---------------------------
     Test file: /home/ripley/R/Lib32/RcppGSL/unitTests/runit.client.package.R
     test.client.package: (1 checks) ... OK (61.84 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/RcppGSL/unitTests/runit.fastLm.R
     test.fastLm: (3 checks) ... OK (0.47 seconds)
     test.fastLm.default: (5 checks) ... OK (0.01 seconds)
     test.fastLm.formula: (5 checks) ... OK (0.03 seconds)
     test.summary.fastLm: (12 checks) ... OK (0.06 seconds)
     ---------------------------
     Test file: /home/ripley/R/Lib32/RcppGSL/unitTests/runit.gsl.R
     .setUp (before test.gsl.RcppGSL.matrix.indexing): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.matrix.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.matrix.view.indexing): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.matrix.view.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.indexing): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.indexing : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.iterating): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.iterator.transform): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.iterator.transform : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.RcppGSL.vector.view.iterating): ERROR !!
     Error executing .setUp before test.gsl.RcppGSL.vector.view.iterating : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.matrix): ERROR !!
     Error executing .setUp before test.gsl.matrix : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.matrix.input.SEXP): ERROR !!
     Error executing .setUp before test.gsl.matrix.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.matrix.view): ERROR !!
     Error executing .setUp before test.gsl.matrix.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector): ERROR !!
     Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.input.SEXP): ERROR !!
     Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.view): ERROR !!
     Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.wrappers): ERROR !!
     Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: RcppGSL
Flavor: r-patched-solaris-x86

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [84s/85s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Last 13 lines of output:
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector): ERROR !!
     Error executing .setUp before test.gsl.vector : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.input.SEXP): ERROR !!
     Error executing .setUp before test.gsl.vector.input.SEXP : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.view): ERROR !!
     Error executing .setUp before test.gsl.vector.view : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     .setUp (before test.gsl.vector.wrappers): ERROR !!
     Error executing .setUp before test.gsl.vector.wrappers : Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
     Error: TEST HAD ERRORS!
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.3
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘RcppGSL-unitTests.Rnw’
     ...
    
    > if (err$nFail > 0) stop(sprintf("unit test problems: %d failures",
    + err$nFail))
    
    > if (err$nErr > 0) stop(sprintf("unit test problems: %d errors",
    + err$nErr))
    
     When sourcing ‘RcppGSL-unitTests.R’:
    Error: unit test problems: 14 errors
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    /usr/local/clang4/bin/../include/c++/v1/algorithm:1932:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
    transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
    ^
    1 error generated.
    make: *** [gsl.o] Error 1
    Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    gsl.cpp:293:5: error: no matching function for call to 'transform'
     std::transform(vec.begin(), vec.end(), res.begin(), ::sqrt);
     ^~~~~~~~~~~~~~
    /usr/local/clang4/bin/../include/c++/v1/algorithm:1922:1: note: candidate template ignored: couldn't infer template argument '_UnaryOperation'
    transform(_InputIterator __first, _InputIterator __last, _OutputIterator __result, _UnaryOperation __op)
    ^
    /usr/local/clang4/bin/../include/c++/v1/algorithm:1932:1: note: candidate function template not viable: requires 5 arguments, but 4 were provided
    transform(_InputIterator1 __first1, _InputIterator1 __last1, _InputIterator2 __first2,
    ^
    1 error generated.
    make: *** [gsl.o] Error 1
    Error in sourceCpp(file.path(pathRcppTests, "cpp/gsl.cpp")) :
     Error 1 occurred building shared library.
    
    Error: processing vignette 'RcppGSL-unitTests.Rnw' failed with diagnostics:
     chunk 2 (label = unitTesting)
    Error in eval(expr, .GlobalEnv) : unit test problems: 14 errors
    Execution halted
Flavor: r-release-osx-x86_64

Package RcppMsgPack

Current CRAN status: ERROR: 1, NOTE: 7, OK: 4

Version: 0.2.0
Check: installed package size
Result: NOTE
     installed size is 13.9Mb
     sub-directories of 1Mb or more:
     include 7.0Mb
     libs 6.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘microbenchmark’
Flavor: r-patched-solaris-x86

Version: 0.2.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-patched-solaris-x86

Package RcppQuantuccia

Current CRAN status: NOTE: 8, OK: 4

Version: 0.0.1
Check: installed package size
Result: NOTE
     installed size is 22.6Mb
     sub-directories of 1Mb or more:
     include 8.9Mb
     libs 13.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package RcppRedis

Current CRAN status: ERROR: 1, OK: 10

Version: 0.1.8
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64

Package RcppSMC

Current CRAN status: ERROR: 1, NOTE: 3, OK: 8

Version: 0.2.0
Check: installed package size
Result: NOTE
     installed size is 6.0Mb
     sub-directories of 1Mb or more:
     libs 5.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-osx-x86_64

Version: 0.2.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-patched-solaris-x86

Package RcppStreams

Current CRAN status: NOTE: 8, OK: 4

Additional issues

clang-ASAN

Version: 0.1.1
Check: compiled code
Result: NOTE
    File ‘RcppStreams/libs/RcppStreams.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.1
Check: installed package size
Result: NOTE
     installed size is 7.4Mb
     sub-directories of 1Mb or more:
     libs 6.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RcppTOML

Current CRAN status: ERROR: 1, OK: 11

Version: 0.1.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-osx-x86_64

Package RcppXts

Current CRAN status: NOTE: 12

Version: 0.0.4
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.0.4
Check: compiled code
Result: NOTE
    File ‘RcppXts/libs/RcppXts.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package RcppZiggurat

Current CRAN status: NOTE: 1, OK: 11

Version: 0.1.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘microbenchmark’
Flavor: r-patched-solaris-x86

Package RDieHarder

Current CRAN status: ERROR: 3, NOTE: 6

Version: 0.1.3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     dieharder.default plot.dieharder print.dieharder summary.dieharder
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.3
Check: R code for possible problems
Result: NOTE
    plot.dieharder: no visible global function definition for ‘par’
    plot.dieharder: no visible global function definition for ‘hist’
    plot.dieharder: no visible global function definition for ‘lines’
    plot.dieharder: no visible global function definition for ‘density’
    plot.dieharder: no visible global function definition for ‘plot’
    plot.dieharder: no visible global function definition for ‘ecdf’
    plot.dieharder: no visible global function definition for ‘segments’
    plot.dieharder: no visible global function definition for ‘mtext’
    plot.dieharder: no visible global function definition for ‘ks.test’
    plot.dieharder: no visible global function definition for ‘wilcox.test’
    summary.dieharder: no visible global function definition for ‘stem’
    summary.dieharder: no visible global function definition for ‘ks.test’
    summary.dieharder: no visible global function definition for
     ‘wilcox.test’
    Undefined global functions or variables:
     density ecdf hist ks.test lines mtext par plot segments stem
     wilcox.test
    Consider adding
     importFrom("graphics", "hist", "lines", "mtext", "par", "plot",
     "segments", "stem")
     importFrom("stats", "density", "ecdf", "ks.test", "wilcox.test")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.3
Check: compiled code
Result: NOTE
    File ‘RDieHarder/libs/RDieHarder.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.3
Flags: --install=fake
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     dieharder.default plot.dieharder print.dieharder summary.dieharder
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.3
Flags: --install=fake
Check: R code for possible problems
Result: NOTE
    dieharder.default: no visible binding for global variable
     ‘.dieharder.generators’
    dieharder.default: no visible binding for global variable
     ‘.dieharder.tests’
    plot.dieharder: no visible global function definition for ‘par’
    plot.dieharder: no visible global function definition for ‘hist’
    plot.dieharder: no visible global function definition for ‘lines’
    plot.dieharder: no visible global function definition for ‘density’
    plot.dieharder: no visible global function definition for ‘plot’
    plot.dieharder: no visible global function definition for ‘ecdf’
    plot.dieharder: no visible global function definition for ‘segments’
    plot.dieharder: no visible global function definition for ‘mtext’
    plot.dieharder: no visible global function definition for ‘ks.test’
    plot.dieharder: no visible global function definition for ‘wilcox.test’
    summary.dieharder: no visible global function definition for ‘stem’
    summary.dieharder: no visible global function definition for ‘ks.test’
    summary.dieharder: no visible global function definition for
     ‘wilcox.test’
    Undefined global functions or variables:
     .dieharder.generators .dieharder.tests density ecdf hist ks.test
     lines mtext par plot segments stem wilcox.test
    Consider adding
     importFrom("graphics", "hist", "lines", "mtext", "par", "plot",
     "segments", "stem")
     importFrom("stats", "density", "ecdf", "ks.test", "wilcox.test")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package rfoaas

Current CRAN status: OK: 12

Package RInside

Current CRAN status: NOTE: 12

Version: 0.2.14
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    File ‘RInside/libs/RInside.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    Compiled code should not call non-API entry points in R.
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.14
Check: installed package size
Result: NOTE
     installed size is 8.8Mb
     sub-directories of 1Mb or more:
     lib 3.5Mb
     libs 4.8Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.14
Check: compiled code
Result: NOTE
    File 'RInside/libs/i386/RInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/x64/RInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/i386/libRInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/x64/libRInside.dll':
     Found 'srand', possibly from 'srand' (C)
     Object: 'RInside.o'
    File 'RInside/libs/i386/RInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/x64/RInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/i386/libRInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    File 'RInside/libs/x64/libRInside.dll':
     Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
     'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers',
     'R_SetParams', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR',
     'getRUser', 'get_R_HOME'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.14
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-solaris-x86

Version: 0.2.14
Check: compiled code
Result: NOTE
    File ‘RInside/libs/RInside.so’:
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘RInside.o’
    File ‘RInside/libs/RInside.so’:
     Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
     ‘R_DefParams’, ‘R_ReplDLLdo1’, ‘R_ReplDLLinit’,
     ‘R_RunExitFinalizers’, ‘R_SetParams’, ‘R_SignalHandlers’,
     ‘R_TempDir’, ‘Rf_endEmbeddedR’, ‘Rf_initEmbeddedR’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package rmsfact

Current CRAN status: OK: 12

Package RProtoBuf

Current CRAN status: ERROR: 1, NOTE: 6, OK: 4

Version: 0.4.11
Check: installed package size
Result: NOTE
     installed size is 8.9Mb
     sub-directories of 1Mb or more:
     doc 1.1Mb
     libs 7.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.4.11
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64

Version: 0.4.11
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 348 is invalid in this locale
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 354 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'RProtoBuf-paper.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.23 ...<a2>i^^ZVn3*<80><b0>^^X<89>^^H8<e5>ryqq<b1>^^W<d3><d2>_PV<af><d7>MӔۃ\<c9>
     [<bd>^<cf>f<b3><9f>}<f6><99>i<9a><b0><ae><a0>,<93><c9>lmm<c9>w<a4>iZ...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Extra }, or forgotten \endgroup.
    l.24 ...<af><d7>q^^T^^Yc<d3><d3><d3>D<e4><fb>>^^Q<c1>^^?<f4><de><e5>^^[<a4>r<b6><a9><d6>Q<9a><f6>"<8b>e}
     X<ce>|><8f><bc><f8><d0>V^^Nc^^L6
    I've deleted a group-closing symbol because it seems to be
    spurious, as in `$x}$'. But perhaps the } is legitimate and
    ! Extra }, or forgotten \endgroup.
    l.25 ^^AW&<93> ^^G<96>
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package RPushbullet

Current CRAN status: OK: 12

Package RQuantLib

Current CRAN status: ERROR: 2, WARN: 3, NOTE: 4

Version: 0.4.3
Check: compiled code
Result: NOTE
    File ‘RQuantLib/libs/RQuantLib.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.4.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:824:13: warning: this decimal constant is unsigned only in ISO C90
     d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:842:13: warning: this decimal constant is unsigned only in ISO C90
     d:/RCompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomlosslatentmodel.hpp:84:13: warning: this decimal constant is unsigned only in ISO C90
     d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:824:13: warning: this decimal constant is unsigned only in ISO C90
     d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomdefaultlatentmodel.hpp:842:13: warning: this decimal constant is unsigned only in ISO C90
     d:/Rcompile/CRANpkg/extralibs330/quantlib/ql/experimental/credit/randomlosslatentmodel.hpp:84:13: warning: this decimal constant is unsigned only in ISO C90
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.2
Check: installed package size
Result: NOTE
     installed size is 23.2Mb
     sub-directories of 1Mb or more:
     libs 22.8Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RVowpalWabbit

Current CRAN status: ERROR: 2, NOTE: 2, OK: 4

Additional issues

clang-UBSAN gcc-UBSAN

Version: 0.0.9
Check: installed package size
Result: NOTE
     installed size is 24.1Mb
     sub-directories of 1Mb or more:
     libs 4.4Mb
     test 19.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.9
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package sanitizers

Current CRAN status: NOTE: 6, OK: 6

Version: 0.1.0
Check: compiled code
Result: NOTE
    File ‘sanitizers/libs/sanitizers.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package tint

Current CRAN status: ERROR: 3, OK: 9

Version: 0.0.3
Check: tests
Result: ERROR
     Running ‘simple.R’
    Running the tests in ‘tests/simple.R’ failed.
    Complete output:
     >
     > ## run in the R session temp.dir. which gets cleaned
     > setwd(tempdir())
     >
     > ## process html -- should work everywhere
     > file.copy(system.file("examples", "simpleHtml.Rmd", package="tint"), "simpleHtml.Rmd")
     [1] TRUE
     > rmarkdown::render("simpleHtml.Rmd")
     Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.0.3
Check: tests
Result: ERROR
     Running ‘simple.R’ [1s/1s]
    Running the tests in ‘tests/simple.R’ failed.
    Complete output:
     >
     > ## run in the R session temp.dir. which gets cleaned
     > setwd(tempdir())
     >
     > ## process html -- should work everywhere
     > file.copy(system.file("examples", "simpleHtml.Rmd", package="tint"), "simpleHtml.Rmd")
     [1] TRUE
     > rmarkdown::render("simpleHtml.Rmd")
     Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.0.3
Check: tests
Result: ERROR
    Running the tests in ‘tests/simple.R’ failed.
    Last 13 lines of output:
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     >
     > ## run in the R session temp.dir. which gets cleaned
     > setwd(tempdir())
     >
     > ## process html -- should work everywhere
     > file.copy(system.file("examples", "simpleHtml.Rmd", package="tint"), "simpleHtml.Rmd")
     [1] TRUE
     > rmarkdown::render("simpleHtml.Rmd")
     Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
     Execution halted
Flavor: r-oldrel-osx-x86_64

Package x13binary

Current CRAN status: NOTE: 4, OK: 8

Version: 1.1.39-1
Check: installed package size
Result: NOTE
     installed size is 5.6Mb
     sub-directories of 1Mb or more:
     bin 5.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64