CRAN Package Check Results for Package finalfit

Last updated on 2020-02-18 18:51:25 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.7 17.35 313.33 330.68 WARN
r-devel-linux-x86_64-debian-gcc 0.9.7 14.84 233.13 247.97 WARN
r-devel-linux-x86_64-fedora-clang 0.9.7 381.21 WARN
r-devel-linux-x86_64-fedora-gcc 0.9.7 373.18 WARN
r-devel-windows-ix86+x86_64 0.9.7 43.00 332.00 375.00 WARN
r-devel-windows-ix86+x86_64-gcc8 0.9.7 67.00 473.00 540.00 WARN
r-patched-linux-x86_64 0.9.7 15.00 273.37 288.37 WARN
r-patched-solaris-x86 0.9.7 500.70 WARN
r-release-linux-x86_64 0.9.7 13.74 272.87 286.61 WARN
r-release-windows-ix86+x86_64 0.9.7 35.00 311.00 346.00 WARN
r-release-osx-x86_64 0.9.7 OK
r-oldrel-windows-ix86+x86_64 0.9.7 21.00 293.00 314.00 WARN
r-oldrel-osx-x86_64 0.9.7 OK

Check Details

Version: 0.9.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'all_tables_examples.Rmd' using rmarkdown
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    boundary (singular) fit: see ?isSingular
    boundary (singular) fit: see ?isSingular
    Warning in bind_rows_(x, .id) :
     binding factor and character vector, coercing into character vector
    Warning in bind_rows_(x, .id) :
     binding character and factor vector, coercing into character vector
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(dependent)` instead of `dependent` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Dependent is not a factor and will be treated as a continuous variable
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Dependent is not a factor and will be treated as a continuous variable
    Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
     Model failed to converge with max|grad| = 0.00357214 (tol = 0.002, component 1)
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent variable is a survival object
    Loading required package: grid
    Loading required package: Matrix
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Dependent is not a factor and will be treated as a continuous variable
    --- finished re-building 'all_tables_examples.Rmd'
    
    --- re-building 'bootstrap.Rmd' using rmarkdown
    --- finished re-building 'bootstrap.Rmd'
    
    --- re-building 'data_prep.Rmd' using rmarkdown
    --- finished re-building 'data_prep.Rmd'
    
    --- re-building 'export.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'export.Rmd'
    
    --- re-building 'finalfit.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'finalfit.Rmd'
    
    --- re-building 'missing.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: lattice
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(dependent)` instead of `dependent` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Warning: Removed 3 rows containing missing values (geom_errorbarh).
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'missing.Rmd'
    
    --- re-building 'survival.Rmd' using rmarkdown
    Quitting from lines 180-186 (survival.Rmd)
    Error: processing vignette 'survival.Rmd' failed with diagnostics:
    Names must be unique.
    --- failed re-building 'survival.Rmd'
    
    SUMMARY: processing the following file failed:
     'survival.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.9.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘all_tables_examples.Rmd’ using rmarkdown
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    boundary (singular) fit: see ?isSingular
    boundary (singular) fit: see ?isSingular
    Warning in bind_rows_(x, .id) :
     binding factor and character vector, coercing into character vector
    Warning in bind_rows_(x, .id) :
     binding character and factor vector, coercing into character vector
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(dependent)` instead of `dependent` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Dependent is not a factor and will be treated as a continuous variable
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Dependent is not a factor and will be treated as a continuous variable
    Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
     Model failed to converge with max|grad| = 0.00357214 (tol = 0.002, component 1)
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent variable is a survival object
    Loading required package: grid
    Loading required package: Matrix
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Dependent is not a factor and will be treated as a continuous variable
    --- finished re-building ‘all_tables_examples.Rmd’
    
    --- re-building ‘bootstrap.Rmd’ using rmarkdown
    --- finished re-building ‘bootstrap.Rmd’
    
    --- re-building ‘data_prep.Rmd’ using rmarkdown
    --- finished re-building ‘data_prep.Rmd’
    
    --- re-building ‘export.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘export.Rmd’
    
    --- re-building ‘finalfit.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘finalfit.Rmd’
    
    --- re-building ‘missing.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: lattice
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(dependent)` instead of `dependent` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Warning: Removed 3 rows containing missing values (geom_errorbarh).
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘missing.Rmd’
    
    --- re-building ‘survival.Rmd’ using rmarkdown
    Quitting from lines 180-186 (survival.Rmd)
    Error: processing vignette 'survival.Rmd' failed with diagnostics:
    Names must be unique.
    --- failed re-building ‘survival.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘survival.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.9.7
Check: package dependencies
Result: NOTE
    Imports includes 21 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.9.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘all_tables_examples.Rmd’ using rmarkdown
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    boundary (singular) fit: see ?isSingular
    boundary (singular) fit: see ?isSingular
    Warning in bind_rows_(x, .id) :
     binding factor and character vector, coercing into character vector
    Warning in bind_rows_(x, .id) :
     binding character and factor vector, coercing into character vector
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(dependent)` instead of `dependent` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Dependent is not a factor and will be treated as a continuous variable
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Dependent is not a factor and will be treated as a continuous variable
    Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
     Model failed to converge with max|grad| = 0.00357214 (tol = 0.002, component 1)
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent variable is a survival object
    Loading required package: grid
    Loading required package: Matrix
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Dependent is not a factor and will be treated as a continuous variable
    --- finished re-building ‘all_tables_examples.Rmd’
    
    --- re-building ‘bootstrap.Rmd’ using rmarkdown
    --- finished re-building ‘bootstrap.Rmd’
    
    --- re-building ‘data_prep.Rmd’ using rmarkdown
    --- finished re-building ‘data_prep.Rmd’
    
    --- re-building ‘export.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘export.Rmd’
    
    --- re-building ‘finalfit.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘finalfit.Rmd’
    
    --- re-building ‘missing.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: lattice
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(dependent)` instead of `dependent` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Warning: Removed 3 rows containing missing values (geom_errorbarh).
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘missing.Rmd’
    
    --- re-building ‘survival.Rmd’ using rmarkdown
    Quitting from lines 180-186 (survival.Rmd)
    Error: processing vignette 'survival.Rmd' failed with diagnostics:
    Names must be unique.
    --- failed re-building ‘survival.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘survival.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'all_tables_examples.Rmd' using rmarkdown
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    boundary (singular) fit: see ?isSingular
    boundary (singular) fit: see ?isSingular
    Warning in bind_rows_(x, .id) :
     binding factor and character vector, coercing into character vector
    Warning in bind_rows_(x, .id) :
     binding character and factor vector, coercing into character vector
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(dependent)` instead of `dependent` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Dependent is not a factor and will be treated as a continuous variable
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Dependent is not a factor and will be treated as a continuous variable
    Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
     Model failed to converge with max|grad| = 0.00357214 (tol = 0.002, component 1)
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent variable is a survival object
    Loading required package: grid
    Loading required package: Matrix
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Dependent is not a factor and will be treated as a continuous variable
    --- finished re-building 'all_tables_examples.Rmd'
    
    --- re-building 'bootstrap.Rmd' using rmarkdown
    --- finished re-building 'bootstrap.Rmd'
    
    --- re-building 'data_prep.Rmd' using rmarkdown
    --- finished re-building 'data_prep.Rmd'
    
    --- re-building 'export.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'export.Rmd'
    
    --- re-building 'finalfit.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'finalfit.Rmd'
    
    --- re-building 'missing.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: lattice
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(dependent)` instead of `dependent` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Warning: Removed 3 rows containing missing values (geom_errorbarh).
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'missing.Rmd'
    
    --- re-building 'survival.Rmd' using rmarkdown
    Quitting from lines 180-186 (survival.Rmd)
    Error: processing vignette 'survival.Rmd' failed with diagnostics:
    Names must be unique.
    --- failed re-building 'survival.Rmd'
    
    SUMMARY: processing the following file failed:
     'survival.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64

Version: 0.9.7
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     doc 4.3Mb
Flavor: r-patched-solaris-x86

Version: 0.9.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘all_tables_examples.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    boundary (singular) fit: see ?isSingular
    boundary (singular) fit: see ?isSingular
    Warning in bind_rows_(x, .id) :
     binding factor and character vector, coercing into character vector
    Warning in bind_rows_(x, .id) :
     binding character and factor vector, coercing into character vector
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(dependent)` instead of `dependent` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Dependent is not a factor and will be treated as a continuous variable
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Dependent is not a factor and will be treated as a continuous variable
    boundary (singular) fit: see ?isSingular
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent variable is a survival object
    Loading required package: grid
    Loading required package: Matrix
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Dependent is not a factor and will be treated as a continuous variable
    --- finished re-building ‘all_tables_examples.Rmd’
    
    --- re-building ‘bootstrap.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘bootstrap.Rmd’
    
    --- re-building ‘data_prep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘data_prep.Rmd’
    
    --- re-building ‘export.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘export.Rmd’
    
    --- re-building ‘finalfit.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘finalfit.Rmd’
    
    --- re-building ‘missing.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: lattice
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(dependent)` instead of `dependent` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    ℹ Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Warning: Removed 3 rows containing missing values (geom_errorbarh).
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building ‘missing.Rmd’
    
    --- re-building ‘survival.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 180-186 (survival.Rmd)
    Error: processing vignette 'survival.Rmd' failed with diagnostics:
    Names must be unique.
    --- failed re-building ‘survival.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘survival.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.9.7
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    boundary (singular) fit: see ?isSingular
    boundary (singular) fit: see ?isSingular
    Warning in bind_rows_(x, .id) :
     binding factor and character vector, coercing into character vector
    Warning in bind_rows_(x, .id) :
     binding character and factor vector, coercing into character vector
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(explanatory)` instead of `explanatory` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Note: Using an external vector in selections is ambiguous.
    i Use `all_of(dependent)` instead of `dependent` to silence this message.
    i See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
    This message is displayed once per session.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Dependent is not a factor and will be treated as a continuous variable
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Dependent is not a factor and will be treated as a continuous variable
    Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
     Model failed to converge with max|grad| = 0.00357214 (tol = 0.002, component 1)
    P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Dependent is not a factor and will be treated as a continuous variable
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Dependent variable is a survival object
    Loading required package: grid
    Loading required package: Matrix
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Dependent is not a factor and will be treated as a continuous variable
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Warning in chisq.test(tab, correct = FALSE) :
     Chi-squared approximation may be incorrect
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Loading required package: lattice
    
    Attaching package: 'lattice'
    
    The following object is masked _by_ '.GlobalEnv':
    
     melanoma
    
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Setting levels: control = 0, case = 1
    Setting direction: controls < cases
    Warning: Removed 3 rows containing missing values (geom_errorbarh).
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Quitting from lines 180-186 (survival.Rmd)
    Error: processing vignette 'survival.Rmd' failed with diagnostics:
    Names must be unique.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64