CRAN Package Check Results for Package glycanr

Last updated on 2018-01-16 07:47:31 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.0 2.08 61.44 63.52 OK
r-devel-linux-x86_64-debian-gcc 0.3.0 1.66 50.93 52.59 OK
r-devel-linux-x86_64-fedora-clang 0.3.0 75.85 ERROR
r-devel-linux-x86_64-fedora-gcc 0.3.0 78.06 ERROR
r-devel-windows-ix86+x86_64 0.3.0 5.00 84.00 89.00 OK
r-patched-linux-x86_64 0.3.0 2.20 64.68 66.88 OK
r-patched-solaris-x86 0.3.0 118.50 OK
r-release-linux-x86_64 0.3.0 1.96 65.08 67.04 OK
r-release-windows-ix86+x86_64 0.3.0 8.00 69.00 77.00 OK
r-release-osx-x86_64 0.3.0 ERROR
r-oldrel-windows-ix86+x86_64 0.3.0 6.00 56.00 62.00 OK
r-oldrel-osx-x86_64 0.3.0 OK

Check Details

Version: 0.3.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘preprocessCore’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64

Version: 0.3.0
Check: examples
Result: ERROR
    Running examples in ‘glycanr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: quantilenorm
    > ### Title: Quantile Normalization of glycan data
    > ### Aliases: quantilenorm
    >
    > ### ** Examples
    >
    > data(mpiu)
    > mpiun <- quantilenorm(mpiu)
    Error in quantilenorm(mpiu) :
     Unable to proceed since package preprocessCore from
     BioConductor is not available on this system. This
     package is a prerequisite to use the quantilenorm function!
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(glycanr)
     From version 0.3 functions tanorm and glyco.outliers expect data frames
     in long format.
     >
     > test_check("glycanr")
     ── 1. Error: (unknown) (@test_normalization.R#152) ────────────────────────────
     Unable to proceed since package preprocessCore from
     BioConductor is not available on this system. This
     package is a prerequisite to use the quantilenorm function!
     1: quantilenorm(mpiu, transpose = TRUE) at testthat/test_normalization.R:152
     2: stop("Unable to proceed since package preprocessCore from\n BioConductor is not available on this system. This\n package is a prerequisite to use the quantilenorm function!")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 5 SKIPPED: 0 FAILED: 1
     1. Error: (unknown) (@test_normalization.R#152)
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [2s/3s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
    
     filter, lag
    
     The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
     Error in quantilenorm(mpiu, transpose = TRUE) :
     Unable to proceed since package preprocessCore from
     BioConductor is not available on this system. This
     package is a prerequisite to use the quantilenorm function!
     Calls: test_check ... force -> source_file -> eval -> eval -> quantilenorm
     testthat results ================================================================
     OK: 5 SKIPPED: 0 FAILED: 0
     Execution halted
Flavor: r-release-osx-x86_64