CRAN Package Check Results for Package glycanr

Last updated on 2017-11-17 17:50:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.0 1.45 38.77 40.22 OK
r-devel-linux-x86_64-debian-gcc 0.3.0 1.44 39.66 41.10 OK
r-devel-linux-x86_64-fedora-clang 0.3.0 78.93 OK
r-devel-linux-x86_64-fedora-gcc 0.3.0 77.93 OK
r-devel-windows-ix86+x86_64 0.3.0 10.00 101.00 111.00 OK
r-patched-linux-x86_64 0.3.0 1.54 40.02 41.57 OK
r-patched-solaris-x86 0.3.0 105.90 OK
r-release-linux-x86_64 0.3.0 1.50 39.76 41.26 OK
r-release-windows-ix86+x86_64 0.3.0 10.00 104.00 114.00 OK
r-release-osx-x86_64 0.3.0 ERROR
r-oldrel-windows-ix86+x86_64 0.3.0 4.00 79.00 83.00 OK
r-oldrel-osx-x86_64 0.3.0 OK

Check Details

Version: 0.3.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘preprocessCore’
Flavor: r-release-osx-x86_64

Version: 0.3.0
Check: examples
Result: ERROR
    Running examples in ‘glycanr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: quantilenorm
    > ### Title: Quantile Normalization of glycan data
    > ### Aliases: quantilenorm
    >
    > ### ** Examples
    >
    > data(mpiu)
    > mpiun <- quantilenorm(mpiu)
    Error in quantilenorm(mpiu) :
     Unable to proceed since package preprocessCore from
     BioConductor is not available on this system. This
     package is a prerequisite to use the quantilenorm function!
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [2s/3s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
    
     filter, lag
    
     The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
     Error in quantilenorm(mpiu, transpose = TRUE) :
     Unable to proceed since package preprocessCore from
     BioConductor is not available on this system. This
     package is a prerequisite to use the quantilenorm function!
     Calls: test_check ... force -> source_file -> eval -> eval -> quantilenorm
     testthat results ================================================================
     OK: 5 SKIPPED: 0 FAILED: 0
     Execution halted
Flavor: r-release-osx-x86_64