CRAN Package Check Results for Maintainer ‘Jeroen Ooms <jeroen.ooms at stat.ucla.edu>’

Last updated on 2017-03-30 15:50:14.

Package ERROR WARN NOTE OK
base64 13
bcrypt 6 7
graphql 1 6 5
hunspell 4 7 1
jose 12
js 11
jsonld 11
minimist 11
Mobilize 13
Ohmage 13
opencpu 8 4
openssl 1 9 2
RAppArmor 1 5 1
rjade 11
sys 9 3
webp 1 11
webutils 12
xslt 9 3

Package base64

Current CRAN status: OK: 13

Package bcrypt

Current CRAN status: NOTE: 6, OK: 7

Version: 0.2
Check: compiled code
Result: NOTE
    File ‘bcrypt/libs/bcrypt.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.2
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘bcrypt/libs/bcrypt.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Package graphql

Current CRAN status: ERROR: 1, NOTE: 6, OK: 5

Version: 1.2
Check: compiled code
Result: NOTE
    File ‘graphql/libs/graphql.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.2
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘graphql/libs/graphql.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.2
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-windows-ix86+x86_64

Package hunspell

Current CRAN status: WARN: 4, NOTE: 7, OK: 1

Version: 2.3
Check: compiled code
Result: NOTE
    File ‘hunspell/libs/hunspell.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 2.3
Flags: --no-stop-on-test-error
Check: installed package size
Result: NOTE
     installed size is 6.7Mb
     sub-directories of 1Mb or more:
     dict 1.3Mb
     doc 1.1Mb
     libs 4.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.3
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘hunspell/libs/hunspell.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    trying URL 'https://arxiv.org/e-print/1406.4806v1'
    Content type 'application/x-eprint-tar' length 29273 bytes (28 KB)
    ==================================================
    downloaded 28 KB
    
    Quitting from lines 153-159 (intro.Rmd)
    Error: processing vignette 'intro.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 2.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘pdftools’
Flavor: r-patched-solaris-sparc

Version: 2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    trying URL 'https://arxiv.org/e-print/1406.4806v1'
    Content type 'application/x-eprint-tar' length 29273 bytes (28 KB)
    ==================================================
    downloaded 28 KB
    
    Quitting from lines 79-82 (intro.Rmd)
    Error: processing vignette 'intro.Rmd' failed with diagnostics:
    there is no package called 'pdftools'
    Execution halted
Flavor: r-patched-solaris-sparc

Version: 2.3
Check: installed package size
Result: NOTE
     installed size is 6.6Mb
     sub-directories of 1Mb or more:
     dict 1.3Mb
     doc 1.1Mb
     libs 4.1Mb
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    trying URL 'https://arxiv.org/e-print/1406.4806v1'
    Content type 'unknown' length 29273 bytes (28 KB)
    ==================================================
    downloaded 28 KB
    
    Quitting from lines 162-165 (intro.Rmd)
    Error: processing vignette 'intro.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    trying URL 'https://arxiv.org/e-print/1406.4806v1'
    Content type 'application/x-eprint-tar' length 29273 bytes (28 KB)
    ==================================================
    downloaded 28 KB
    
    Quitting from lines 153-159 (intro.Rmd)
    Error: processing vignette 'intro.Rmd' failed with diagnostics:
    replacement has 0 rows, data has 4973
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Package jose

Current CRAN status: OK: 12

Package js

Current CRAN status: OK: 11

Package jsonld

Current CRAN status: OK: 11

Package minimist

Current CRAN status: OK: 11

Package Mobilize

Current CRAN status: NOTE: 13

Version: 2.16-4
Check: R code for possible problems
Result: NOTE
    bin.by.date: no visible binding for global variable ‘quantile’
    bin.by.date: no visible global function definition for ‘na.omit’
    biplot: no visible global function definition for ‘na.omit’
    biplot.character: no visible global function definition for ‘runif’
    biplot.character: no visible global function definition for ‘opts’
    biplot.character: no visible global function definition for
     ‘theme_blank’
    distributionplot: no visible global function definition for ‘na.omit’
    distributionplot.character: no visible global function definition for
     ‘head’
    distributionplot.factor: no visible global function definition for
     ‘opts’
    distributionplot.factor: no visible global function definition for
     ‘theme_text’
    mapmobility: no visible global function definition for ‘lines’
    responseplot: no visible global function definition for ‘na.omit’
    scatterplot: no visible global function definition for ‘na.omit’
    scatterplot: no visible global function definition for ‘opts’
    scatterplot: no visible global function definition for ‘theme_text’
    sharedtimeplot: no visible global function definition for ‘na.omit’
    timeplot: no visible global function definition for ‘na.omit’
    timeplot: no visible global function definition for ‘opts’
    timeplot.character: no visible global function definition for ‘runif’
    timeplot.character: no visible global function definition for ‘rnorm’
    timeplot.character: no visible binding for global variable ‘text’
    userplot: no visible global function definition for ‘na.omit’
    Undefined global functions or variables:
     head lines na.omit opts quantile rnorm runif text theme_blank
     theme_text
    Consider adding
     importFrom("graphics", "lines", "text")
     importFrom("stats", "na.omit", "quantile", "rnorm", "runif")
     importFrom("utils", "head")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.16-4
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    bin.by.date: no visible binding for global variable ‘quantile’
    bin.by.date: no visible global function definition for ‘na.omit’
    biplot: no visible global function definition for ‘na.omit’
    biplot.character: no visible global function definition for ‘runif’
    biplot.character: no visible global function definition for ‘opts’
    biplot.character: no visible global function definition for
     ‘theme_blank’
    distributionplot: no visible global function definition for ‘na.omit’
    distributionplot.character: no visible global function definition for
     ‘head’
    distributionplot.factor: no visible global function definition for
     ‘opts’
    distributionplot.factor: no visible global function definition for
     ‘theme_text’
    mapmobility: no visible global function definition for ‘lines’
    responseplot: no visible global function definition for ‘na.omit’
    scatterplot: no visible global function definition for ‘na.omit’
    scatterplot: no visible global function definition for ‘opts’
    scatterplot: no visible global function definition for ‘theme_text’
    sharedtimeplot: no visible global function definition for ‘na.omit’
    timeplot: no visible global function definition for ‘na.omit’
    timeplot: no visible global function definition for ‘opts’
    timeplot.character: no visible global function definition for ‘runif’
    timeplot.character: no visible global function definition for ‘rnorm’
    timeplot.character: no visible binding for global variable ‘text’
    userplot: no visible global function definition for ‘na.omit’
    Undefined global functions or variables:
     head lines na.omit opts quantile rnorm runif text theme_blank
     theme_text
    Consider adding
     importFrom("graphics", "lines", "text")
     importFrom("stats", "na.omit", "quantile", "rnorm", "runif")
     importFrom("utils", "head")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.16-4
Check: R code for possible problems
Result: NOTE
    biplot.character: no visible global function definition for 'opts'
    biplot.character: no visible global function definition for
     'theme_blank'
    distributionplot.factor: no visible global function definition for
     'opts'
    distributionplot.factor: no visible global function definition for
     'theme_text'
    scatterplot: no visible global function definition for 'opts'
    scatterplot: no visible global function definition for 'theme_text'
    timeplot: no visible global function definition for 'opts'
Flavor: r-oldrel-windows-ix86+x86_64

Package Ohmage

Current CRAN status: NOTE: 13

Version: 2.11-4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘XML’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.11-4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     as.vector.multifactor
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.11-4
Check: R code for possible problems
Result: NOTE
    multifactor: no visible global function definition for ‘na.omit’
    ruuid: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     na.omit runif
    Consider adding
     importFrom("stats", "na.omit", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.11-4
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘XML’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.11-4
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     as.vector.multifactor
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.11-4
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    multifactor: no visible global function definition for ‘na.omit’
    ruuid: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     na.omit runif
    Consider adding
     importFrom("stats", "na.omit", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Package opencpu

Current CRAN status: NOTE: 8, OK: 4

Version: 1.6.1
Flags: --no-stop-on-test-error
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RAppArmor’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.6.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'RAppArmor'
Flavors: r-devel-windows-ix86+x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.6.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘RAppArmor’ ‘feather’
Flavors: r-patched-solaris-sparc, r-oldrel-windows-ix86+x86_64

Package openssl

Current CRAN status: ERROR: 1, NOTE: 9, OK: 2

Version: 0.9.6
Check: compiled code
Result: NOTE
    File ‘openssl/libs/openssl.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.9.6
Check: examples
Result: ERROR
    Running examples in ‘openssl-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: cert_verify
    > ### Title: X509 certificates
    > ### Aliases: cert_verify download_ssl_cert ca_bundle
    >
    > ### ** Examples
    >
    > # Verify the r-project HTTPS cert
    > chain <- download_ssl_cert("www.r-project.org", 443)
    > print(chain)
    [[1]]
    [x509 certificate] *.r-project.org
    md5: 9aa98308c79a93da348a6a228b2e48ab
    sha1: 35c5d904e830005b852c2c1b6e5db00773524aad
    
    [[2]]
    [x509 certificate] Starfield Secure Certificate Authority - G2
    md5: 1cd0976187316dde07259fd6267e2f0e
    sha1: 7edc376dcfd45e6ddf082c160df6ac21835b95d4
    
    [[3]]
    [x509 certificate] Starfield Root Certificate Authority - G2
    md5: 497bf0a8bc53a0846d7fd29499f558e9
    sha1: 9565b778c8a50eb4fefd45c8a658dde2411ead0a
    
    [[4]]
    [x509 certificate]
    md5: 324a4bbbc863699bbe749ac6dd1d4624
    sha1: ad7e1c28b064ef8f6003402014c3d0e3370eb58a
    
    > print(as.list(chain[[1]])$pubkey)
    [2048-bit rsa public key]
    md5: 6b372d9b5c5759fbb28baf03c609730a
    > cert_verify(chain, ca_bundle())
    [1] TRUE
    >
    > # Another example
    > chain <- download_ssl_cert("public.opencpu.org")
    Error in download_ssl_cert("public.opencpu.org") :
     Failed to connect to 107.170.149.192 on port 443
    Calls: download_ssl_cert -> .Call
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.9.6
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘openssl/libs/openssl.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.9.6
Check: installed package size
Result: NOTE
     installed size is 8.2Mb
     sub-directories of 1Mb or more:
     doc 2.9Mb
     libs 4.9Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Package RAppArmor

Current CRAN status: ERROR: 1, NOTE: 5, OK: 1

Version: 2.0.2
Check: compiled code
Result: NOTE
    File ‘RAppArmor/libs/RAppArmor.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 2.0.2
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘RAppArmor/libs/RAppArmor.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0.2
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-mavericks

Package rjade

Current CRAN status: OK: 11

Package sys

Current CRAN status: NOTE: 9, OK: 3

Version: 1.1
Check: compiled code
Result: NOTE
    File ‘sys/libs/sys.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.1
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘sys/libs/sys.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1
Check: compiled code
Result: NOTE
    File 'sys/libs/i386/sys.dll':
     Found 'printf', possibly from 'printf' (C)
     Object: 'exec.o'
    File 'sys/libs/x64/sys.dll':
     Found 'printf', possibly from 'printf' (C)
     Object: 'exec.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Package webp

Current CRAN status: ERROR: 1, OK: 11

Version: 0.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-mavericks

Package webutils

Current CRAN status: OK: 12

Package xslt

Current CRAN status: NOTE: 9, OK: 3

Version: 1.0
Check: compiled code
Result: NOTE
    File ‘xslt/libs/xslt.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.0
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘xslt/libs/xslt.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 6.6Mb
     sub-directories of 1Mb or more:
     libs 6.5Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64