CRAN Package Check Results for Package lfc

Last updated on 2022-06-28 19:55:03 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 1.80 100.02 101.82 OK
r-devel-linux-x86_64-debian-gcc 0.2.2 1.37 70.95 72.32 OK
r-devel-linux-x86_64-fedora-clang 0.2.2 133.93 OK
r-devel-linux-x86_64-fedora-gcc 0.2.2 134.90 OK
r-devel-windows-x86_64 0.2.2 11.00 121.00 132.00 OK
r-patched-linux-x86_64 0.2.2 1.91 90.93 92.84 OK
r-release-linux-x86_64 0.2.2 1.98 92.13 94.11 OK
r-release-macos-arm64 0.2.2 43.00 OK
r-release-macos-x86_64 0.2.2 37.00 ERROR
r-release-windows-x86_64 0.2.2 11.00 120.00 131.00 OK
r-oldrel-macos-arm64 0.2.2 47.00 OK
r-oldrel-macos-x86_64 0.2.2 39.00 WARN
r-oldrel-windows-ix86+x86_64 0.2.2 5.00 135.00 140.00 OK

Check Details

Version: 0.2.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘airway’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
    Error(s) in re-building vignettes:
    --- re-building ‘lfc_vignette.Rmd’ using rmarkdown
    Loading required package: S4Vectors
    Loading required package: stats4
    Loading required package: BiocGenerics
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which.max, which.min
    
    
    Attaching package: 'S4Vectors'
    
    The following objects are masked from 'package:base':
    
     I, expand.grid, unname
    
    Loading required package: IRanges
    Loading required package: GenomicRanges
    Loading required package: GenomeInfoDb
    Loading required package: SummarizedExperiment
    Loading required package: MatrixGenerics
    Loading required package: matrixStats
    
    Attaching package: 'MatrixGenerics'
    
    The following objects are masked from 'package:matrixStats':
    
     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
     colWeightedMeans, colWeightedMedians, colWeightedSds,
     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
     rowWeightedSds, rowWeightedVars
    
    Loading required package: Biobase
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    
    Attaching package: 'Biobase'
    
    The following object is masked from 'package:MatrixGenerics':
    
     rowMedians
    
    The following objects are masked from 'package:matrixStats':
    
     anyMissing, rowMedians
    
    
    Attaching package: 'lfc'
    
    The following object is masked from 'package:DESeq2':
    
     results
    
    Quitting from lines 35-44 (lfc_vignette.Rmd)
    Error: processing vignette 'lfc_vignette.Rmd' failed with diagnostics:
    there is no package called 'airway'
    --- failed re-building ‘lfc_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘lfc_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘lfc_vignette.Rmd’ using rmarkdown
    Loading required package: S4Vectors
    Loading required package: stats4
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which.max, which.min
    
    
    Attaching package: 'S4Vectors'
    
    The following objects are masked from 'package:base':
    
     I, expand.grid, unname
    
    Loading required package: IRanges
    Loading required package: GenomicRanges
    Loading required package: GenomeInfoDb
    Loading required package: SummarizedExperiment
    Loading required package: MatrixGenerics
    Loading required package: matrixStats
    
    Attaching package: 'MatrixGenerics'
    
    The following objects are masked from 'package:matrixStats':
    
     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
     colWeightedMeans, colWeightedMedians, colWeightedSds,
     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
     rowWeightedSds, rowWeightedVars
    
    Loading required package: Biobase
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    
    Attaching package: 'Biobase'
    
    The following object is masked from 'package:MatrixGenerics':
    
     rowMedians
    
    The following objects are masked from 'package:matrixStats':
    
     anyMissing, rowMedians
    
    
    Attaching package: 'lfc'
    
    The following object is masked from 'package:DESeq2':
    
     results
    
    Quitting from lines 35-44 (lfc_vignette.Rmd)
    Error: processing vignette 'lfc_vignette.Rmd' failed with diagnostics:
    there is no package called 'airway'
    --- failed re-building ‘lfc_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘lfc_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64