CRAN Package Check Results for Package lme4

Last updated on 2020-05-26 07:49:14 CEST.

Additional issues

gcc-UBSAN

Check Details

Version: 1.1-23
Check: installed package size
Result: NOTE
     installed size is 27.2Mb
     sub-directories of 1Mb or more:
     R 1.5Mb
     doc 2.4Mb
     libs 20.7Mb
     testdata 1.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-23
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AAAtest-all.R' [208s]
     Running 'HSAURtrees.R' [3s]
     Running 'REMLdev.R' [2s]
     Running 'ST.R' [2s]
     Running 'agridat_gotway.R' [4s]
     Running 'bootMer.R' [11s]
     Running 'boundary.R' [10s]
     Running 'confint.R' [4s]
     Running 'devCritFun.R' [4s]
     Running 'devfunQ.R' [3s]
     Running 'drop.R' [4s]
     Running 'drop1contrasts.R' [3s]
     Running 'dynload.R' [0s]
     Running 'elston.R' [4s]
     Running 'evalCall.R' [4s]
     Running 'extras.R' [3s]
     Running 'falsezero_dorie.R' [2s]
     Running 'fewlevels.R' [22s]
     Running 'getME.R' [4s]
     Running 'glmer-1.R' [5s]
     Running 'glmerControlPass.R' [10s]
     Running 'glmerWarn.R' [3s]
     Running 'glmmExt.R' [12s]
     Running 'glmmWeights.R' [10s]
     Running 'hatvalues.R' [2s]
     Running 'is.R' [3s]
     Running 'lmList-tst.R' [4s]
     Running 'lme4_nlme.R' [3s]
     Running 'lmer-0.R' [3s]
     Running 'lmer-1.R' [6s]
     Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...428d427
    < boundary (singular) fit: see ?isSingular
    430d428
    < boundary (singular) fit: see ?isSingular
     Running 'lmer-conv.R' [4s]
     Running 'lmer2_ex.R' [2s]
     Running 'methods.R' [3s]
     Running 'minval.R' [3s]
     Running 'modFormula.R' [3s]
     Running 'nbinom.R' [3s]
     Running 'nlmer-conv.R' [3s]
     Running 'nlmer.R' [3s]
     Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK
     Running 'offset.R' [4s]
     Running 'optimizer.R' [4s]
     Running 'polytomous.R' [2s]
     Running 'prLogistic.R' [2s]
     Running 'predict_basis.R' [3s]
     Running 'predsim.R' [4s]
     Running 'priorWeights.R' [9s]
     Running 'priorWeightsModComp.R' [5s]
     Running 'profile-tst.R' [28s]
     Running 'refit.R' [28s]
     Running 'resids.R' [2s]
     Running 'respiratory.R' [13s]
     Running 'simulate.R' [6s]
     Running 'testOptControl.R' [2s]
     Running 'test_times.R' [3s]
     Running 'testcolonizer.R' [3s]
     Running 'testcrab.R' [11s]
     Running 'throw.R' [5s]
     Running 'utils.R' [0s]
     Running 'varcorr.R' [3s]
     Running 'vcov-etc.R' [3s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Complete output:
     > if(require("testthat", quietly = TRUE)) {
     + pkg <- "lme4"
     + require(pkg, character.only=TRUE, quietly=TRUE)
     + if(getRversion() < "3.5.0") { withAutoprint <- identity ; prt <- print } else { prt <- identity }
     + if(Sys.getenv("USER") %in% c("maechler", "bbolker")) withAutoprint({
     + ## for developers' sake:
     + lP <- .libPaths() # ---- .libPaths() : ----
     + prt(lP)
     + ## ---- Entries in .libPaths()[1] : ----
     + prt(list.files(lP[1], include.dirs=TRUE))
     + prt(sessionInfo())
     + prt(packageDescription("Matrix"))
     + ## 'lme4' from packageDescription "file" :
     + prt(attr(packageDescription("lme4"), "file"))
     + })
     + test_check(pkg)
     + ##======== ^^^
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     -- 1. Failure: missDataFun (@test-formulaEval.R#218) --------------------------
     t2[["elapsed"]] is not less than 1/4 * t1[["elapsed"]]. Difference: 0.0025
    
     == testthat results ===========================================================
     [ OK: 787 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ]
     1. Failure: missDataFun (@test-formulaEval.R#218)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-23
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [85s/125s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Last 13 lines of output:
     + test_check(pkg)
     + ##======== ^^^
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     ── 1. Failure: missDataFun (@test-formulaEval.R#218) ──────────────────────────
     t2[["elapsed"]] is not less than 1/4 * t1[["elapsed"]]. Difference: 0.049
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 790 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: missDataFun (@test-formulaEval.R#218)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1-23
Check: running tests for arch ‘x64’
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-ix86+x86_64

Version: 1.1-23
Check: re-building of vignette outputs
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-oldrel-windows-ix86+x86_64