Last updated on 2023-12-04 22:57:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.3 | 175.86 | 430.81 | 606.67 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.3 | 129.33 | 311.21 | 440.54 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3.3 | 843.97 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.3 | 820.66 | NOTE | |||
| r-devel-windows-x86_64 | 0.3.3 | 148.00 | 359.00 | 507.00 | NOTE | |
| r-patched-linux-x86_64 | 0.3.3 | 172.25 | 401.98 | 574.23 | NOTE | |
| r-release-linux-x86_64 | 0.3.3 | 139.02 | 408.54 | 547.56 | NOTE | |
| r-release-macos-arm64 | 0.3.3 | 236.00 | NOTE | |||
| r-release-macos-x86_64 | 0.3.3 | 285.00 | NOTE | |||
| r-release-windows-x86_64 | 0.3.3 | 174.00 | 422.00 | 596.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.3.3 | 165.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.3.3 | 395.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.3.3 | 134.00 | 379.00 | 513.00 | NOTE |
Version: 0.3.3
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.3.3
Check: Rd files
Result: NOTE
checkRd: (-1) est_pairwise_rf.Rd:77: Lost braces
77 | \code{chisq.pval.thres}{threshold used to perform the segregation tests}
| ^
checkRd: (-1) est_pairwise_rf.Rd:78: Lost braces
78 | \code{chisq.pval}{p-values associated with the performed segregation tests}
| ^
checkRd: (-1) filter_missing.Rd:18: Lost braces
18 | \code{'marker'}{filter out markers based on their percentage of missing data (default)}
| ^
checkRd: (-1) filter_missing.Rd:19: Lost braces
19 | \code{'individual'}{filter out individuals based on their percentage of missing data}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.3
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in Rd file 'add_mrk_at_tail_ph_list.Rd':
‘void’
Documented arguments not in \usage in Rd file 'aggregate_matrix.Rd':
‘void’
Documented arguments not in \usage in Rd file 'calc_genoprob_haplo.Rd':
‘void’
Documented arguments not in \usage in Rd file 'cat_phase.Rd':
‘void’
Documented arguments not in \usage in Rd file 'check_data_dist_sanity.Rd':
‘void’
Documented arguments not in \usage in Rd file 'check_data_dose_sanity.Rd':
‘void’
Documented arguments not in \usage in Rd file 'check_if_rf_is_possible.Rd':
‘void’
Documented arguments not in \usage in Rd file 'check_ls_phase.Rd':
‘void’
Documented arguments not in \usage in Rd file 'concatenate_ph_list.Rd':
‘void’
Documented arguments not in \usage in Rd file 'create_map.Rd':
‘void’
Documented arguments not in \usage in Rd file 'draw_cross.Rd':
‘void’
Documented arguments not in \usage in Rd file 'est_haplo_hmm.Rd':
‘void’
Documented arguments not in \usage in Rd file 'est_map_haplo_given_genoprob.Rd':
‘void’
Documented arguments not in \usage in Rd file 'est_rf_hmm_single.Rd':
‘void’
Documented arguments not in \usage in Rd file 'est_rf_hmm_single_one_parent.Rd':
‘void’
Documented arguments not in \usage in Rd file 'filter_map_at_hmm_thres.Rd':
‘void’
Documented arguments not in \usage in Rd file 'filter_non_conforming_classes.Rd':
‘void’
Documented arguments not in \usage in Rd file 'format_rf.Rd':
‘void’
Documented arguments not in \usage in Rd file 'genotyping_global_error.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_cache_two_pts_from_web.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_counts.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_counts_all_phases.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_counts_two_parents.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_dosage_type.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_full_info_tail.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_ols_map.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_ph_list_subset.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_rf_from_mat.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_states_and_emission_one_parent.Rd':
‘void’
Documented arguments not in \usage in Rd file 'get_w_m.Rd':
‘void’
Documented arguments not in \usage in Rd file 'gg_color_hue.Rd':
‘void’
Documented arguments not in \usage in Rd file 'imf_h.Rd':
‘void’
Documented arguments not in \usage in Rd file 'imf_k.Rd':
‘void’
Documented arguments not in \usage in Rd file 'imf_m.Rd':
‘void’
Documented arguments not in \usage in Rd file 'is.prob.data.Rd':
‘void’
Documented arguments not in \usage in Rd file 'mf_h.Rd':
‘void’
Documented arguments not in \usage in Rd file 'mf_k.Rd':
‘void’
Documented arguments not in \usage in Rd file 'mf_m.Rd':
‘void’
Documented arguments not in \usage in Rd file 'mp_pallet1.Rd':
‘void’
Documented arguments not in \usage in Rd file 'mp_pallet2.Rd':
‘void’
Documented arguments not in \usage in Rd file 'mp_pallet3.Rd':
‘void’
Documented arguments not in \usage in Rd file 'mrk_chisq_test.Rd':
‘void’
Documented arguments not in \usage in Rd file 'msg.Rd':
‘void’
Documented arguments not in \usage in Rd file 'paralell_pairwise_discrete.Rd':
‘void’
Documented arguments not in \usage in Rd file 'paralell_pairwise_discrete_rcpp.Rd':
‘void’
Documented arguments not in \usage in Rd file 'paralell_pairwise_probability.Rd':
‘void’
Documented arguments not in \usage in Rd file 'perm_pars.Rd':
‘void’
Documented arguments not in \usage in Rd file 'perm_tot.Rd':
‘void’
Documented arguments not in \usage in Rd file 'plot_compare_haplotypes.Rd':
‘void’
Documented arguments not in \usage in Rd file 'plot_one_map.Rd':
‘void’
Documented arguments not in \usage in Rd file 'poly_hmm_est.Rd':
‘void’
Documented arguments not in \usage in Rd file 'prepare_map.Rd':
‘void’
Documented arguments not in \usage in Rd file 'print_ph.Rd':
‘void’
Documented arguments not in \usage in Rd file 'sample_data.Rd':
‘x’
Documented arguments not in \usage in Rd file 'select_rf.Rd':
‘void’
Documented arguments not in \usage in Rd file 'sim_cross_one_informative_parent.Rd':
‘void’
Documented arguments not in \usage in Rd file 'sim_cross_two_informative_parents.Rd':
‘void’
Documented arguments not in \usage in Rd file 'split_mappoly.Rd':
‘void’
Documented arguments not in \usage in Rd file 'table_to_mappoly.Rd':
‘void’
Documented arguments not in \usage in Rd file 'update_ph_list_at_hmm_thres.Rd':
‘void’
Documented arguments not in \usage in Rd file 'v_2_m.Rd':
‘void’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.3.3
Check: installed package size
Result: NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
R 2.7Mb
data 2.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64