CRAN Package Check Results for Package maxnodf

Last updated on 2024-07-14 09:51:16 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.0 29.68 52.95 82.63 ERROR
r-devel-linux-x86_64-debian-gcc 1.0.0 19.11 40.85 59.96 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.0 113.06 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0.0 109.47 ERROR
r-devel-windows-x86_64 1.0.0 20.00 72.00 92.00 ERROR
r-patched-linux-x86_64 1.0.0 20.93 56.82 77.75 NOTE
r-release-linux-x86_64 1.0.0 22.05 56.05 78.10 NOTE
r-release-macos-arm64 1.0.0 32.00 NOTE
r-release-macos-x86_64 1.0.0 48.00 NOTE
r-release-windows-x86_64 1.0.0 21.00 84.00 105.00 NOTE
r-oldrel-macos-arm64 1.0.0 36.00 NOTE
r-oldrel-macos-x86_64 1.0.0 62.00 NOTE
r-oldrel-windows-x86_64 1.0.0 20.00 96.00 116.00 NOTE

Additional issues

clang-UBSAN gcc-UBSAN valgrind

Check Details

Version: 1.0.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.0
Check: examples
Result: ERROR Running examples in ‘maxnodf-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: maxnodf > ### Title: Calculate the maximum nestedness of a bipartite network > ### Aliases: maxnodf > > ### ** Examples > > maxnodf(matrix(1.0, 12, 10)) | | | 0% | |= | 1% | |= | 2% | |== | 3% | |=== | 4% | |==== | 5% | |==== | 6% | |===== | 7% | |====== | 8% | |====== | 9% | |======= | 10% | |======== | 11% | |========= | 12% | |========= | 13% | |========== | 14% | |=========== | 15% | |=========== | 16% | |============ | 17% | |============= | 18% | |============== | 19% | |============== | 20% | |=============== | 21% | |================ | 22% | |================ | 23% | |================= | 24% | |================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 32% | |======================= | 33% | |======================== | 34% | |======================== | 35% | |========================= | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 39% | |============================ | 40% | |============================= | 41% | |============================= | 42% | |============================== | 43% | |=============================== | 44% | |=============================== | 45% | |================================ | 46% | |================================= | 47% | |================================== | 48% | |================================== | 49% | |=================================== | 50% | |==================================== | 51% | |==================================== | 52% | |===================================== | 53% | |====================================== | 54% | |======================================= | 55% | |======================================= | 56% | |======================================== | 57% | |========================================= | 58% | |========================================= | 59% | |========================================== | 60% | |=========================================== | 61% | |============================================ | 62% | |============================================ | 63% | |============================================= | 64% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 67% | |================================================ | 68% | |================================================= | 69% | |================================================= | 70% | |================================================== | 71% | |=================================================== | 72% | |=================================================== | 73% | |==================================================== | 74% | |===================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 82% | |========================================================== | 83% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 89% | |=============================================================== | 90% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 93% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 97% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 100% $max_nodf [1] 0 $max_nodf_mtx [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [1,] 1 1 1 1 1 1 1 1 1 1 [2,] 1 1 1 1 1 1 1 1 1 1 [3,] 1 1 1 1 1 1 1 1 1 1 [4,] 1 1 1 1 1 1 1 1 1 1 [5,] 1 1 1 1 1 1 1 1 1 1 [6,] 1 1 1 1 1 1 1 1 1 1 [7,] 1 1 1 1 1 1 1 1 1 1 [8,] 1 1 1 1 1 1 1 1 1 1 [9,] 1 1 1 1 1 1 1 1 1 1 [10,] 1 1 1 1 1 1 1 1 1 1 [11,] 1 1 1 1 1 1 1 1 1 1 [12,] 1 1 1 1 1 1 1 1 1 1 > maxnodf(c(14, 13, 52), 2) | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% [> ] 0 % *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: sim_anneal_opt_cpp(mtx) 2: maxnodf(c(14, 13, 52), 2) An irrecoverable exception occurred. R is aborting now ... Segmentation fault Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [22s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(maxnodf) > > test_check("maxnodf") | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========= | 14% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | |================ | 23% | |================ | 24% | |================= | 24% | |================= | 25% | |================== | 25% | |================== | 26% | |=================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 28% | |==================== | 29% | |===================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 31% | |====================== | 32% | |======================= | 32% | |======================= | 33% | |======================= | 34% | |======================== | 34% | |======================== | 35% | |========================= | 35% | |========================= | 36% | |========================== | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 38% | |=========================== | 39% | |============================ | 39% | |============================ | 40% | |============================ | 41% | |============================= | 41% | |============================= | 42% | |============================== | 42% | |============================== | 43% | |============================== | 44% | |=============================== | 44% | |=============================== | 45% | |================================ | 45% | |================================ | 46% | |================================= | 46% | |================================= | 47% | |================================= | 48% | |================================== | 48% | |================================== | 49% | |=================================== | 49% | |=================================== | 50% | |=================================== | 51% | |==================================== | 51% | |==================================== | 52% | |===================================== | 52% | |===================================== | 53% | |===================================== | 54% | |====================================== | 54% | |====================================== | 55% | |======================================= | 55% | |======================================= | 56% | |======================================== | 56% | |======================================== | 57% | |======================================== | 58% | |========================================= | 58% | |========================================= | 59% | |========================================== | 59% | |========================================== | 60% | |========================================== | 61% | |=========================================== | 61% | |=========================================== | 62% | |============================================ | 62% | |============================================ | 63% | |============================================ | 64% | |============================================= | 64% | |============================================= | 65% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 66% | |=============================================== | 67% | |=============================================== | 68% | |================================================ | 68% | |================================================ | 69% | |================================================= | 69% | |================================================= | 70% | |================================================= | 71% | |================================================== | 71% | |================================================== | 72% | |=================================================== | 72% | |=================================================== | 73% | |=================================================== | 74% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 75% | |===================================================== | 76% | |====================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 78% | |======================================================= | 79% | |======================================================== | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 81% | |========================================================= | 82% | |========================================================== | 82% | |========================================================== | 83% | |========================================================== | 84% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 85% | |============================================================ | 86% | |============================================================= | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 88% | |============================================================== | 89% | |=============================================================== | 89% | |=============================================================== | 90% | |=============================================================== | 91% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 92% | |================================================================= | 93% | |================================================================= | 94% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 96% | |==================================================================== | 97% | |==================================================================== | 98% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 99% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% Hillclimb round: 1. Current NODF= 0.9 | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [> ] 0 % *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: sim_anneal_opt_cpp(mtx) 2: maxnodf(m, quality = 2) 3: eval_bare(expr, quo_get_env(quo)) 4: quasi_label(enquo(object), label, arg = "object") 5: expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) 6: eval(code, test_env) 7: eval(code, test_env) 8: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 12: doTryCatch(return(expr), name, parentenv, handler) 13: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 14: tryCatchList(expr, classes, parentenv, handlers) 15: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 16: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter()) 17: test_that("maxnodf", { m <- matrix(0, 5, 5) diag(m) <- 1 m[1:2, ] <- 1 expect_equal(maxnodf(m, quality = 0)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 1)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) expect_equal(maxnodf(c(5, 5, 13), quality = 0)$max_nodf, 0.9)}) 18: eval(code, test_env) 19: eval(code, test_env) 20: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 21: doTryCatch(return(expr), name, parentenv, handler) 22: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 23: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 24: doTryCatch(return(expr), name, parentenv, handler) 25: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 26: tryCatchList(expr, classes, parentenv, handlers) 27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 28: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new()) 29: source_file(path, env = env(env), desc = desc, error_call = error_call) 30: FUN(X[[i]], ...) 31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 32: doTryCatch(return(expr), name, parentenv, handler) 33: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 34: tryCatchList(expr, classes, parentenv, handlers) 35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 40: test_check("maxnodf") An irrecoverable exception occurred. R is aborting now ... Segmentation fault Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [17s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(maxnodf) > > test_check("maxnodf") | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========= | 14% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | |================ | 23% | |================ | 24% | |================= | 24% | |================= | 25% | |================== | 25% | |================== | 26% | |=================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 28% | |==================== | 29% | |===================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 31% | |====================== | 32% | |======================= | 32% | |======================= | 33% | |======================= | 34% | |======================== | 34% | |======================== | 35% | |========================= | 35% | |========================= | 36% | |========================== | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 38% | |=========================== | 39% | |============================ | 39% | |============================ | 40% | |============================ | 41% | |============================= | 41% | |============================= | 42% | |============================== | 42% | |============================== | 43% | |============================== | 44% | |=============================== | 44% | |=============================== | 45% | |================================ | 45% | |================================ | 46% | |================================= | 46% | |================================= | 47% | |================================= | 48% | |================================== | 48% | |================================== | 49% | |=================================== | 49% | |=================================== | 50% | |=================================== | 51% | |==================================== | 51% | |==================================== | 52% | |===================================== | 52% | |===================================== | 53% | |===================================== | 54% | |====================================== | 54% | |====================================== | 55% | |======================================= | 55% | |======================================= | 56% | |======================================== | 56% | |======================================== | 57% | |======================================== | 58% | |========================================= | 58% | |========================================= | 59% | |========================================== | 59% | |========================================== | 60% | |========================================== | 61% | |=========================================== | 61% | |=========================================== | 62% | |============================================ | 62% | |============================================ | 63% | |============================================ | 64% | |============================================= | 64% | |============================================= | 65% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 66% | |=============================================== | 67% | |=============================================== | 68% | |================================================ | 68% | |================================================ | 69% | |================================================= | 69% | |================================================= | 70% | |================================================= | 71% | |================================================== | 71% | |================================================== | 72% | |=================================================== | 72% | |=================================================== | 73% | |=================================================== | 74% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 75% | |===================================================== | 76% | |====================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 78% | |======================================================= | 79% | |======================================================== | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 81% | |========================================================= | 82% | |========================================================== | 82% | |========================================================== | 83% | |========================================================== | 84% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 85% | |============================================================ | 86% | |============================================================= | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 88% | |============================================================== | 89% | |=============================================================== | 89% | |=============================================================== | 90% | |=============================================================== | 91% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 92% | |================================================================= | 93% | |================================================================= | 94% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 96% | |==================================================================== | 97% | |==================================================================== | 98% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 99% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% Hillclimb round: 1. Current NODF= 0.9 | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [> ] 0 % *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: sim_anneal_opt_cpp(mtx) 2: maxnodf(m, quality = 2) 3: eval_bare(expr, quo_get_env(quo)) 4: quasi_label(enquo(object), label, arg = "object") 5: expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) 6: eval(code, test_env) 7: eval(code, test_env) 8: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 12: doTryCatch(return(expr), name, parentenv, handler) 13: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 14: tryCatchList(expr, classes, parentenv, handlers) 15: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 16: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter()) 17: test_that("maxnodf", { m <- matrix(0, 5, 5) diag(m) <- 1 m[1:2, ] <- 1 expect_equal(maxnodf(m, quality = 0)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 1)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) expect_equal(maxnodf(c(5, 5, 13), quality = 0)$max_nodf, 0.9)}) 18: eval(code, test_env) 19: eval(code, test_env) 20: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 21: doTryCatch(return(expr), name, parentenv, handler) 22: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 23: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 24: doTryCatch(return(expr), name, parentenv, handler) 25: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 26: tryCatchList(expr, classes, parentenv, handlers) 27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 28: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new()) 29: source_file(path, env = env(env), desc = desc, error_call = error_call) 30: FUN(X[[i]], ...) 31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 32: doTryCatch(return(expr), name, parentenv, handler) 33: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 34: tryCatchList(expr, classes, parentenv, handlers) 35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 40: test_check("maxnodf") An irrecoverable exception occurred. R is aborting now ... Segmentation fault Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘stats’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: examples
Result: ERROR Running examples in ‘maxnodf-Ex.R’ failed The error most likely occurred in: > ### Name: maxnodf > ### Title: Calculate the maximum nestedness of a bipartite network > ### Aliases: maxnodf > > ### ** Examples > > maxnodf(matrix(1.0, 12, 10)) | | | 0% | |= | 1% | |= | 2% | |== | 3% | |=== | 4% | |==== | 5% | |==== | 6% | |===== | 7% | |====== | 8% | |====== | 9% | |======= | 10% | |======== | 11% | |========= | 12% | |========= | 13% | |========== | 14% | |=========== | 15% | |=========== | 16% | |============ | 17% | |============= | 18% | |============== | 19% | |============== | 20% | |=============== | 21% | |================ | 22% | |================ | 23% | |================= | 24% | |================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 32% | |======================= | 33% | |======================== | 34% | |======================== | 35% | |========================= | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 39% | |============================ | 40% | |============================= | 41% | |============================= | 42% | |============================== | 43% | |=============================== | 44% | |=============================== | 45% | |================================ | 46% | |================================= | 47% | |================================== | 48% | |================================== | 49% | |=================================== | 50% | |==================================== | 51% | |==================================== | 52% | |===================================== | 53% | |====================================== | 54% | |======================================= | 55% | |======================================= | 56% | |======================================== | 57% | |========================================= | 58% | |========================================= | 59% | |========================================== | 60% | |=========================================== | 61% | |============================================ | 62% | |============================================ | 63% | |============================================= | 64% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 67% | |================================================ | 68% | |================================================= | 69% | |================================================= | 70% | |================================================== | 71% | |=================================================== | 72% | |=================================================== | 73% | |==================================================== | 74% | |===================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 82% | |========================================================== | 83% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 89% | |=============================================================== | 90% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 93% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 97% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 100% $max_nodf [1] 0 $max_nodf_mtx [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [1,] 1 1 1 1 1 1 1 1 1 1 [2,] 1 1 1 1 1 1 1 1 1 1 [3,] 1 1 1 1 1 1 1 1 1 1 [4,] 1 1 1 1 1 1 1 1 1 1 [5,] 1 1 1 1 1 1 1 1 1 1 [6,] 1 1 1 1 1 1 1 1 1 1 [7,] 1 1 1 1 1 1 1 1 1 1 [8,] 1 1 1 1 1 1 1 1 1 1 [9,] 1 1 1 1 1 1 1 1 1 1 [10,] 1 1 1 1 1 1 1 1 1 1 [11,] 1 1 1 1 1 1 1 1 1 1 [12,] 1 1 1 1 1 1 1 1 1 1 > maxnodf(c(14, 13, 52), 2) | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% [> ] 0 % *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: sim_anneal_opt_cpp(mtx) 2: maxnodf(c(14, 13, 52), 2) An irrecoverable exception occurred. R is aborting now ... Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [29s/74s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(maxnodf) > > test_check("maxnodf") | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========= | 14% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | |================ | 23% | |================ | 24% | |================= | 24% | |================= | 25% | |================== | 25% | |================== | 26% | |=================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 28% | |==================== | 29% | |===================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 31% | |====================== | 32% | |======================= | 32% | |======================= | 33% | |======================= | 34% | |======================== | 34% | |======================== | 35% | |========================= | 35% | |========================= | 36% | |========================== | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 38% | |=========================== | 39% | |============================ | 39% | |============================ | 40% | |============================ | 41% | |============================= | 41% | |============================= | 42% | |============================== | 42% | |============================== | 43% | |============================== | 44% | |=============================== | 44% | |=============================== | 45% | |================================ | 45% | |================================ | 46% | |================================= | 46% | |================================= | 47% | |================================= | 48% | |================================== | 48% | |================================== | 49% | |=================================== | 49% | |=================================== | 50% | |=================================== | 51% | |==================================== | 51% | |==================================== | 52% | |===================================== | 52% | |===================================== | 53% | |===================================== | 54% | |====================================== | 54% | |====================================== | 55% | |======================================= | 55% | |======================================= | 56% | |======================================== | 56% | |======================================== | 57% | |======================================== | 58% | |========================================= | 58% | |========================================= | 59% | |========================================== | 59% | |========================================== | 60% | |========================================== | 61% | |=========================================== | 61% | |=========================================== | 62% | |============================================ | 62% | |============================================ | 63% | |============================================ | 64% | |============================================= | 64% | |============================================= | 65% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 66% | |=============================================== | 67% | |=============================================== | 68% | |================================================ | 68% | |================================================ | 69% | |================================================= | 69% | |================================================= | 70% | |================================================= | 71% | |================================================== | 71% | |================================================== | 72% | |=================================================== | 72% | |=================================================== | 73% | |=================================================== | 74% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 75% | |===================================================== | 76% | |====================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 78% | |======================================================= | 79% | |======================================================== | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 81% | |========================================================= | 82% | |========================================================== | 82% | |========================================================== | 83% | |========================================================== | 84% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 85% | |============================================================ | 86% | |============================================================= | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 88% | |============================================================== | 89% | |=============================================================== | 89% | |=============================================================== | 90% | |=============================================================== | 91% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 92% | |================================================================= | 93% | |================================================================= | 94% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 96% | |==================================================================== | 97% | |==================================================================== | 98% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 99% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% Hillclimb round: 1. Current NODF= 0.9 | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [> ] 0 % *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: sim_anneal_opt_cpp(mtx) 2: maxnodf(m, quality = 2) 3: eval_bare(expr, quo_get_env(quo)) 4: quasi_label(enquo(object), label, arg = "object") 5: expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) 6: eval(code, test_env) 7: eval(code, test_env) 8: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 12: doTryCatch(return(expr), name, parentenv, handler) 13: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 14: tryCatchList(expr, classes, parentenv, handlers) 15: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 16: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter()) 17: test_that("maxnodf", { m <- matrix(0, 5, 5) diag(m) <- 1 m[1:2, ] <- 1 expect_equal(maxnodf(m, quality = 0)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 1)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) expect_equal(maxnodf(c(5, 5, 13), quality = 0)$max_nodf, 0.9)}) 18: eval(code, test_env) 19: eval(code, test_env) 20: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 21: doTryCatch(return(expr), name, parentenv, handler) 22: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 23: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 24: doTryCatch(return(expr), name, parentenv, handler) 25: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 26: tryCatchList(expr, classes, parentenv, handlers) 27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 28: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new()) 29: source_file(path, env = env(env), desc = desc, error_call = error_call) 30: FUN(X[[i]], ...) 31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 32: doTryCatch(return(expr), name, parentenv, handler) 33: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 34: tryCatchList(expr, classes, parentenv, handlers) 35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 40: test_check("maxnodf") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [25s/50s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(maxnodf) > > test_check("maxnodf") | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========= | 14% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | |================ | 23% | |================ | 24% | |================= | 24% | |================= | 25% | |================== | 25% | |================== | 26% | |=================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 28% | |==================== | 29% | |===================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 31% | |====================== | 32% | |======================= | 32% | |======================= | 33% | |======================= | 34% | |======================== | 34% | |======================== | 35% | |========================= | 35% | |========================= | 36% | |========================== | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 38% | |=========================== | 39% | |============================ | 39% | |============================ | 40% | |============================ | 41% | |============================= | 41% | |============================= | 42% | |============================== | 42% | |============================== | 43% | |============================== | 44% | |=============================== | 44% | |=============================== | 45% | |================================ | 45% | |================================ | 46% | |================================= | 46% | |================================= | 47% | |================================= | 48% | |================================== | 48% | |================================== | 49% | |=================================== | 49% | |=================================== | 50% | |=================================== | 51% | |==================================== | 51% | |==================================== | 52% | |===================================== | 52% | |===================================== | 53% | |===================================== | 54% | |====================================== | 54% | |====================================== | 55% | |======================================= | 55% | |======================================= | 56% | |======================================== | 56% | |======================================== | 57% | |======================================== | 58% | |========================================= | 58% | |========================================= | 59% | |========================================== | 59% | |========================================== | 60% | |========================================== | 61% | |=========================================== | 61% | |=========================================== | 62% | |============================================ | 62% | |============================================ | 63% | |============================================ | 64% | |============================================= | 64% | |============================================= | 65% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 66% | |=============================================== | 67% | |=============================================== | 68% | |================================================ | 68% | |================================================ | 69% | |================================================= | 69% | |================================================= | 70% | |================================================= | 71% | |================================================== | 71% | |================================================== | 72% | |=================================================== | 72% | |=================================================== | 73% | |=================================================== | 74% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 75% | |===================================================== | 76% | |====================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 78% | |======================================================= | 79% | |======================================================== | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 81% | |========================================================= | 82% | |========================================================== | 82% | |========================================================== | 83% | |========================================================== | 84% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 85% | |============================================================ | 86% | |============================================================= | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 88% | |============================================================== | 89% | |=============================================================== | 89% | |=============================================================== | 90% | |=============================================================== | 91% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 92% | |================================================================= | 93% | |================================================================= | 94% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 96% | |==================================================================== | 97% | |==================================================================== | 98% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 99% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% Hillclimb round: 1. Current NODF= 0.9 | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [> ] 0 % *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: sim_anneal_opt_cpp(mtx) 2: maxnodf(m, quality = 2) 3: eval_bare(expr, quo_get_env(quo)) 4: quasi_label(enquo(object), label, arg = "object") 5: expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) 6: eval(code, test_env) 7: eval(code, test_env) 8: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 12: doTryCatch(return(expr), name, parentenv, handler) 13: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 14: tryCatchList(expr, classes, parentenv, handlers) 15: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 16: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter()) 17: test_that("maxnodf", { m <- matrix(0, 5, 5) diag(m) <- 1 m[1:2, ] <- 1 expect_equal(maxnodf(m, quality = 0)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 1)$max_nodf, 0.9) expect_equal(maxnodf(m, quality = 2)$max_nodf, 0.9) expect_equal(maxnodf(c(5, 5, 13), quality = 0)$max_nodf, 0.9)}) 18: eval(code, test_env) 19: eval(code, test_env) 20: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 21: doTryCatch(return(expr), name, parentenv, handler) 22: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 23: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 24: doTryCatch(return(expr), name, parentenv, handler) 25: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 26: tryCatchList(expr, classes, parentenv, handlers) 27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 28: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new()) 29: source_file(path, env = env(env), desc = desc, error_call = error_call) 30: FUN(X[[i]], ...) 31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 32: doTryCatch(return(expr), name, parentenv, handler) 33: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 34: tryCatchList(expr, classes, parentenv, handlers) 35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 40: test_check("maxnodf") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: examples
Result: ERROR Running examples in 'maxnodf-Ex.R' failed The error most likely occurred in: > ### Name: maxnodf > ### Title: Calculate the maximum nestedness of a bipartite network > ### Aliases: maxnodf > > ### ** Examples > > maxnodf(matrix(1.0, 12, 10)) | | | 0% | |= | 1% | |= | 2% | |== | 3% | |=== | 4% | |==== | 5% | |==== | 6% | |===== | 7% | |====== | 8% | |====== | 9% | |======= | 10% | |======== | 11% | |========= | 12% | |========= | 13% | |========== | 14% | |=========== | 15% | |=========== | 16% | |============ | 17% | |============= | 18% | |============== | 19% | |============== | 20% | |=============== | 21% | |================ | 22% | |================ | 23% | |================= | 24% | |================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 32% | |======================= | 33% | |======================== | 34% | |======================== | 35% | |========================= | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 39% | |============================ | 40% | |============================= | 41% | |============================= | 42% | |============================== | 43% | |=============================== | 44% | |=============================== | 45% | |================================ | 46% | |================================= | 47% | |================================== | 48% | |================================== | 49% | |=================================== | 50% | |==================================== | 51% | |==================================== | 52% | |===================================== | 53% | |====================================== | 54% | |======================================= | 55% | |======================================= | 56% | |======================================== | 57% | |========================================= | 58% | |========================================= | 59% | |========================================== | 60% | |=========================================== | 61% | |============================================ | 62% | |============================================ | 63% | |============================================= | 64% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 67% | |================================================ | 68% | |================================================= | 69% | |================================================= | 70% | |================================================== | 71% | |=================================================== | 72% | |=================================================== | 73% | |==================================================== | 74% | |===================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 82% | |========================================================== | 83% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 89% | |=============================================================== | 90% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 93% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 97% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 100% $max_nodf [1] 0 $max_nodf_mtx [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [1,] 1 1 1 1 1 1 1 1 1 1 [2,] 1 1 1 1 1 1 1 1 1 1 [3,] 1 1 1 1 1 1 1 1 1 1 [4,] 1 1 1 1 1 1 1 1 1 1 [5,] 1 1 1 1 1 1 1 1 1 1 [6,] 1 1 1 1 1 1 1 1 1 1 [7,] 1 1 1 1 1 1 1 1 1 1 [8,] 1 1 1 1 1 1 1 1 1 1 [9,] 1 1 1 1 1 1 1 1 1 1 [10,] 1 1 1 1 1 1 1 1 1 1 [11,] 1 1 1 1 1 1 1 1 1 1 [12,] 1 1 1 1 1 1 1 1 1 1 > maxnodf(c(14, 13, 52), 2) | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% [> ] 0 % Flavor: r-devel-windows-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running 'testthat.R' [12s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(maxnodf) > > test_check("maxnodf") | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========= | 14% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | |================ | 23% | |================ | 24% | |================= | 24% | |================= | 25% | |================== | 25% | |================== | 26% | |=================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 28% | |==================== | 29% | |===================== | 29% | |===================== | 30% | |===================== | 31% | |====================== | 31% | |====================== | 32% | |======================= | 32% | |======================= | 33% | |======================= | 34% | |======================== | 34% | |======================== | 35% | |========================= | 35% | |========================= | 36% | |========================== | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 38% | |=========================== | 39% | |============================ | 39% | |============================ | 40% | |============================ | 41% | |============================= | 41% | |============================= | 42% | |============================== | 42% | |============================== | 43% | |============================== | 44% | |=============================== | 44% | |=============================== | 45% | |================================ | 45% | |================================ | 46% | |================================= | 46% | |================================= | 47% | |================================= | 48% | |================================== | 48% | |================================== | 49% | |=================================== | 49% | |=================================== | 50% | |=================================== | 51% | |==================================== | 51% | |==================================== | 52% | |===================================== | 52% | |===================================== | 53% | |===================================== | 54% | |====================================== | 54% | |====================================== | 55% | |======================================= | 55% | |======================================= | 56% | |======================================== | 56% | |======================================== | 57% | |======================================== | 58% | |========================================= | 58% | |========================================= | 59% | |========================================== | 59% | |========================================== | 60% | |========================================== | 61% | |=========================================== | 61% | |=========================================== | 62% | |============================================ | 62% | |============================================ | 63% | |============================================ | 64% | |============================================= | 64% | |============================================= | 65% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 66% | |=============================================== | 67% | |=============================================== | 68% | |================================================ | 68% | |================================================ | 69% | |================================================= | 69% | |================================================= | 70% | |================================================= | 71% | |================================================== | 71% | |================================================== | 72% | |=================================================== | 72% | |=================================================== | 73% | |=================================================== | 74% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 75% | |===================================================== | 76% | |====================================================== | 76% | |====================================================== | 77% | |====================================================== | 78% | |======================================================= | 78% | |======================================================= | 79% | |======================================================== | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 81% | |========================================================= | 82% | |========================================================== | 82% | |========================================================== | 83% | |========================================================== | 84% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 85% | |============================================================ | 86% | |============================================================= | 86% | |============================================================= | 87% | |============================================================= | 88% | |============================================================== | 88% | |============================================================== | 89% | |=============================================================== | 89% | |=============================================================== | 90% | |=============================================================== | 91% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 92% | |================================================================= | 93% | |================================================================= | 94% | |================================================================== | 94% | |================================================================== | 95% | |=================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 96% | |==================================================================== | 97% | |==================================================================== | 98% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 99% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |======== | 12% | |=========== | 16% | |============== | 20% | |================= | 24% | |==================== | 28% | |====================== | 32% | |========================= | 36% | |============================ | 40% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 60% | |============================================= | 64% | |================================================ | 68% | |================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |=========================================================== | 84% | |============================================================== | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% Hillclimb round: 1. Current NODF= 0.9 | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [> ] 0 % Flavor: r-devel-windows-x86_64