CRAN Package Check Results for Package metaRNASeq

Last updated on 2020-11-28 08:47:46 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.3 2.79 98.17 100.96 OK
r-devel-linux-x86_64-debian-gcc 1.0.3 1.69 71.38 73.07 OK
r-devel-linux-x86_64-fedora-clang 1.0.3 131.78 OK
r-devel-linux-x86_64-fedora-gcc 1.0.3 115.50 OK
r-devel-windows-ix86+x86_64 1.0.3 5.00 48.00 53.00 OK --no-vignettes
r-patched-linux-x86_64 1.0.3 2.65 94.98 97.63 OK
r-patched-solaris-x86 1.0.3 142.90 OK --no-build-vignettes
r-release-linux-x86_64 1.0.3 2.61 96.13 98.74 OK
r-release-macos-x86_64 1.0.3 OK
r-release-windows-ix86+x86_64 1.0.3 5.00 32.00 37.00 OK --no-vignettes
r-oldrel-macos-x86_64 1.0.3 ERROR
r-oldrel-windows-ix86+x86_64 1.0.3 4.00 38.00 42.00 OK --no-vignettes

Check Details

Version: 1.0.3
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘metaRNASeq.Rnw’
     ...
    
    > if (requireNamespace("DESeq2", quietly = TRUE)) {
    + dds1 <- DESeq2::DESeqDataSetFromMatrix(countData = simstudy1$study,
    + colData = sim .... [TRUNCATED]
    
    > rawpval <- list(pval1 = res1[["pvalue"]], pval2 = res2[["pvalue"]])
    
     When sourcing ‘metaRNASeq.R’:
    Error: object 'res1' not found
    Execution halted
    
     ‘metaRNASeq.Rnw’... failed
Flavor: r-oldrel-macos-x86_64

Version: 1.0.3
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘metaRNASeq.Rnw’ using Sweave
    
    Error: processing vignette 'metaRNASeq.Rnw' failed with diagnostics:
     chunk 6 (label = storepvalandFC)
    Error in eval(expr, .GlobalEnv) : object 'res1' not found
    
    --- failed re-building ‘metaRNASeq.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘metaRNASeq.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64