Last updated on 2021-01-17 13:48:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.8.2 | 27.75 | 289.95 | 317.70 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.8.2 | 24.83 | 213.22 | 238.05 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.8.2 | 376.38 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.8.2 | 373.70 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.8.2 | 41.00 | 297.00 | 338.00 | ERROR | |
| r-patched-linux-x86_64 | 1.8.2 | 19.42 | 270.25 | 289.67 | ERROR | |
| r-patched-solaris-x86 | 1.8.2 | 475.60 | ERROR | |||
| r-release-linux-x86_64 | 1.8.2 | 23.61 | 272.31 | 295.92 | ERROR | |
| r-release-macos-x86_64 | 1.8.2 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.8.2 | 42.00 | 324.00 | 366.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.8.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.8.2 | 53.00 | 419.00 | 472.00 | ERROR |
Version: 1.8.2
Check: tests
Result: ERROR
Running 'testthat.R' [47s/54s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
== Skipped tests ===============================================================
* Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
== Warnings ====================================================================
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
-- Warning (test-findZeros.R:13:3): Can find zeros in two variables ------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZerosMult(a * x^2 - v ~ a & x, v = 8) test-findZeros.R:13:2
2. mosaic:::.sort(roots, near = near, type = sortBy)
5. base::order(data[1])
6. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
7. base:::FUN(X[[i]], ...)
10. base::xtfrm.data.frame(x)
-- Warning (test-findZeros.R:21:3): Works with Broyden -------------------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:21:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
-- Warning (test-findZeros.R:28:3): Works with Broyden -------------------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:28:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
-- Warning (test-findZeros.R:36:3): Works with Broyden -------------------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:36:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
-- Warning (test-read.file.R:31:3): read.file works ----------------------------
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ------------
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
== Failed tests ================================================================
-- Error (test-read.file.R:31:3): read.file works ------------------------------
Error: cannot open the connection to 'http://www.mosaic-web.org/go/datasets/Dome.csv'
Backtrace:
x
1. \-mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. \-utils::read.csv(...)
3. \-utils::read.table(...)
4. \-base::file(file, "rt")
[ FAIL 1 | WARN 10 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.8.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'Resampling.Rmd' using rmarkdown
Quitting from lines 151-152 (Resampling.Rmd)
Error: processing vignette 'Resampling.Rmd' failed with diagnostics:
cannot open the connection to 'http://www.mosaic-web.org/go/datasets/MustangPrice.csv'
--- failed re-building 'Resampling.Rmd'
--- re-building 'mosaic-resources.Rmd' using rmarkdown
--- finished re-building 'mosaic-resources.Rmd'
--- re-building 'MinimalRgg.Rnw' using knitr
Loading required package: mosaic
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
Loading required package: parallel
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
--- finished re-building 'MinimalRgg.Rnw'
SUMMARY: processing the following file failed:
'Resampling.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.8.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [34s/51s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
══ Skipped tests ═══════════════════════════════════════════════════════════════
● Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
══ Warnings ════════════════════════════════════════════════════════════════════
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:13:3): Can find zeros in two variables ────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZerosMult(a * x^2 - v ~ a & x, v = 8) test-findZeros.R:13:2
2. mosaic:::.sort(roots, near = near, type = sortBy)
5. base::order(data[1])
6. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
7. base:::FUN(X[[i]], ...)
10. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:21:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:21:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:28:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:28:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:36:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:36:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-read.file.R:31:3): read.file works ────────────────────────────
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ────────────
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-read.file.R:31:3): read.file works ──────────────────────────────
Error: cannot open the connection to 'http://www.mosaic-web.org/go/datasets/Dome.csv'
Backtrace:
█
1. └─mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. └─utils::read.csv(...)
3. └─utils::read.table(...)
4. └─base::file(file, "rt")
[ FAIL 1 | WARN 10 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.8.2
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘ggridges’ ‘ggstance’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.8.2
Check: Rd cross-references
Result: NOTE
Undeclared package ‘cubature’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.8.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [52s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
══ Skipped tests ═══════════════════════════════════════════════════════════════
● Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
══ Warnings ════════════════════════════════════════════════════════════════════
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:13:3): Can find zeros in two variables ────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZerosMult(a * x^2 - v ~ a & x, v = 8) test-findZeros.R:13:2
2. mosaic:::.sort(roots, near = near, type = sortBy)
5. base::order(data[1])
6. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
7. base:::FUN(X[[i]], ...)
10. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:21:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:21:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:28:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:28:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:36:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:36:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-read.file.R:31:3): read.file works ────────────────────────────
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ────────────
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-read.file.R:31:3): read.file works ──────────────────────────────
Error: cannot open the connection to 'http://www.mosaic-web.org/go/datasets/Dome.csv'
Backtrace:
█
1. └─mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. └─utils::read.csv(...)
3. └─utils::read.table(...)
4. └─base::file(file, "rt")
[ FAIL 1 | WARN 10 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.8.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘Resampling.Rmd’ using rmarkdown
Quitting from lines 151-152 (Resampling.Rmd)
Error: processing vignette 'Resampling.Rmd' failed with diagnostics:
cannot open the connection to 'http://www.mosaic-web.org/go/datasets/MustangPrice.csv'
--- failed re-building ‘Resampling.Rmd’
--- re-building ‘mosaic-resources.Rmd’ using rmarkdown
--- finished re-building ‘mosaic-resources.Rmd’
--- re-building ‘MinimalRgg.Rnw’ using knitr
Loading required package: mosaic
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
Loading required package: parallel
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
--- finished re-building ‘MinimalRgg.Rnw’
SUMMARY: processing the following file failed:
‘Resampling.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.8.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [55s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
══ Skipped tests ═══════════════════════════════════════════════════════════════
● Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
══ Warnings ════════════════════════════════════════════════════════════════════
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:13:3): Can find zeros in two variables ────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZerosMult(a * x^2 - v ~ a & x, v = 8) test-findZeros.R:13:2
2. mosaic:::.sort(roots, near = near, type = sortBy)
5. base::order(data[1])
6. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
7. base:::FUN(X[[i]], ...)
10. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:21:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:21:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:28:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:28:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-findZeros.R:36:3): Works with Broyden ─────────────────────────
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:36:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
── Warning (test-read.file.R:31:3): read.file works ────────────────────────────
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-read.file.R:31:3): read.file works ──────────────────────────────
Error: cannot open the connection to 'http://www.mosaic-web.org/go/datasets/Dome.csv'
Backtrace:
█
1. └─mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. └─utils::read.csv(...)
3. └─utils::read.table(...)
4. └─base::file(file, "rt")
[ FAIL 1 | WARN 9 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.8.2
Check: tests
Result: ERROR
Running 'testthat.R' [48s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
== Skipped tests ===============================================================
* Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
== Warnings ====================================================================
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
-- Warning (test-findZeros.R:13:3): Can find zeros in two variables ------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZerosMult(a * x^2 - v ~ a & x, v = 8) test-findZeros.R:13:2
2. mosaic:::.sort(roots, near = near, type = sortBy)
5. base::order(data[1])
6. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
7. base:::FUN(X[[i]], ...)
10. base::xtfrm.data.frame(x)
-- Warning (test-findZeros.R:21:3): Works with Broyden -------------------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:21:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
-- Warning (test-findZeros.R:28:3): Works with Broyden -------------------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:28:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
-- Warning (test-findZeros.R:36:3): Works with Broyden -------------------------
cannot xtfrm data frames
Backtrace:
1. mosaic::findZeros(...) test-findZeros.R:36:2
3. mosaic::findZerosMult(...)
4. mosaic:::.sort(roots, near = near, type = sortBy)
7. base::order(data[1])
8. base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
9. base:::FUN(X[[i]], ...)
12. base::xtfrm.data.frame(x)
-- Warning (test-read.file.R:31:3): read.file works ----------------------------
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ------------
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
== Failed tests ================================================================
-- Error (test-read.file.R:31:3): read.file works ------------------------------
Error: cannot open the connection
Backtrace:
x
1. \-mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. \-utils::read.csv(...)
3. \-utils::read.table(...)
4. \-base::file(file, "rt")
[ FAIL 1 | WARN 10 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.8.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'Resampling.Rmd' using rmarkdown
Quitting from lines 151-152 (Resampling.Rmd)
Error: processing vignette 'Resampling.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'Resampling.Rmd'
--- re-building 'mosaic-resources.Rmd' using rmarkdown
--- finished re-building 'mosaic-resources.Rmd'
--- re-building 'MinimalRgg.Rnw' using knitr
Loading required package: mosaic
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
Loading required package: parallel
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
--- finished re-building 'MinimalRgg.Rnw'
SUMMARY: processing the following file failed:
'Resampling.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.8.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [46s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
══ Skipped tests ═══════════════════════════════════════════════════════════════
● Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
══ Warnings ════════════════════════════════════════════════════════════════════
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
── Warning (test-read.file.R:31:3): read.file works ────────────────────────────
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ────────────
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-read.file.R:31:3): read.file works ──────────────────────────────
Error: cannot open the connection to 'http://www.mosaic-web.org/go/datasets/Dome.csv'
Backtrace:
█
1. └─mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. └─utils::read.csv(...)
3. └─utils::read.table(...)
4. └─base::file(file, "rt")
[ FAIL 1 | WARN 6 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.8.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [63s/67s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
══ Skipped tests ═══════════════════════════════════════════════════════════════
● Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
══ Warnings ════════════════════════════════════════════════════════════════════
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
── Warning (test-read.file.R:31:3): read.file works ────────────────────────────
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ────────────
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-read.file.R:31:3): read.file works ──────────────────────────────
Error: cannot open the connection to 'http://www.mosaic-web.org/go/datasets/Dome.csv'
Backtrace:
█
1. └─mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. └─utils::read.csv(...)
3. └─utils::read.table(...)
4. └─base::file(file, "rt")
[ FAIL 1 | WARN 6 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.8.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Resampling.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 151-152 (Resampling.Rmd)
Error: processing vignette 'Resampling.Rmd' failed with diagnostics:
cannot open the connection to 'http://www.mosaic-web.org/go/datasets/MustangPrice.csv'
--- failed re-building ‘Resampling.Rmd’
--- re-building ‘mosaic-resources.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘mosaic-resources.Rmd’
--- re-building ‘MinimalRgg.Rnw’ using knitr
Loading required package: mosaic
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
Loading required package: parallel
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
Using parallel package.
* Set seed with set.rseed().
* Disable this message with options(`mosaic:parallelMessage` = FALSE)
--- finished re-building ‘MinimalRgg.Rnw’
SUMMARY: processing the following file failed:
‘Resampling.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.8.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [47s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
══ Skipped tests ═══════════════════════════════════════════════════════════════
● Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
● Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
══ Warnings ════════════════════════════════════════════════════════════════════
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
── Warning (test-findZeros.R:9:3): zeros are within search interval ────────────
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
── Warning (test-read.file.R:31:3): read.file works ────────────────────────────
cannot open URL 'http://www.mosaic-web.org/go/datasets/Dome.csv': HTTP status was '404 Not Found'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-rfun.R:17:3): rfun works ──────────────────────────────────────
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
── Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ────────────
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-read.file.R:31:3): read.file works ──────────────────────────────
Error: cannot open the connection to 'http://www.mosaic-web.org/go/datasets/Dome.csv'
Backtrace:
█
1. └─mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. └─utils::read.csv(...)
3. └─utils::read.table(...)
4. └─base::file(file, "rt")
[ FAIL 1 | WARN 6 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.8.2
Check: tests
Result: ERROR
Running 'testthat.R' [68s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
== Skipped tests ===============================================================
* Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
== Warnings ====================================================================
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
-- Warning (test-read.file.R:31:3): read.file works ----------------------------
InternetOpenUrl failed: 'Der Servername oder die Serveradresse konnte nicht verarbeitet werden.'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ------------
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
== Failed tests ================================================================
-- Error (test-read.file.R:31:3): read.file works ------------------------------
Error: cannot open the connection
Backtrace:
x
1. \-mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. \-utils::read.csv(...)
3. \-utils::read.table(...)
4. \-base::file(file, "rt")
[ FAIL 1 | WARN 6 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.8.2
Check: tests
Result: ERROR
Running 'testthat.R' [81s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mosaic)
Registered S3 method overwritten by 'mosaic':
method from
fortify.SpatialPolygonsDataFrame ggplot2
The 'mosaic' package masks several functions from core packages in order to add
additional features. The original behavior of these functions should not be affected by this.
Attaching package: 'mosaic'
The following objects are masked from 'package:dplyr':
count, do, tally
The following object is masked from 'package:Matrix':
mean
The following object is masked from 'package:ggplot2':
stat
The following objects are masked from 'package:stats':
IQR, binom.test, cor, cor.test, cov, fivenum, median, prop.test,
quantile, sd, t.test, var
The following objects are masked from 'package:base':
max, mean, min, prod, range, sample, sum
>
> test_check("mosaic")
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 2.28e-06)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
10.00000 26.00000 31.33333 48.69333
Of the 1000 samples (1 original + 999 random),
33 ( 3.3 % ) had test stats = 18
240 ( 24 % ) had test stats >= 18
Null distribution appears to be asymmetric. (p = 8.76e-30)
Test statistic applied to sample data = 18
Quantiles of test statistic applied to random data:
50% 90% 95% 99%
16 19 20 22
Of the 1000 samples (1 original + 999 random),
131 ( 13.1 % ) had test stats = 18
297 ( 29.7 % ) had test stats >= 18
[1] 0.9331928
[1] 567.449
== Skipped tests ===============================================================
* Figure not generated yet: ashplots1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: bargraph5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: clustering4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: dotplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: firstexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fitspline4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: fourthexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: ladd9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: mplot8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotcumfreq1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist10.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist11.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist12.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist13.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist14.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist15.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist16.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist17.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist18.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist19.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist4.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist5.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist6.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist7.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist8.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotdist9.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotmodel3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: plotpoints3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: rfun2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: secondexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: stattally3.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: thirdexample.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: usmaps1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm1.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
* Figure not generated yet: xpnorm2.svg
Please run `vdiffr::manage_cases()` to validate the figure. (1)
== Warnings ====================================================================
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. base::sapply(searchx, pfun)
6. base::lapply(X = X, FUN = FUN, ...)
7. mosaic:::FUN(X[[i]], ...)
8. [ base::eval(...) ] with 1 more call
-- Warning (test-findZeros.R:9:3): zeros are within search interval ------------
NaNs produced
Backtrace:
1. testthat::expect_true(...) test-findZeros.R:9:2
4. mosaic::findZeros(sin(1/x) ~ x, near = 0, within = 4)
5. mosaic::findZeros(...)
6. base::sapply(searchx, pfun)
7. base::lapply(X = X, FUN = FUN, ...)
8. mosaic:::FUN(X[[i]], ...)
9. [ base::eval(...) ] with 1 more call
-- Warning (test-read.file.R:31:3): read.file works ----------------------------
InternetOpenUrl failed: 'Der Servername oder die Serveradresse konnte nicht verarbeitet werden.'
Backtrace:
1. mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. utils::read.csv(...)
3. utils::read.table(...)
4. base::file(file, "rt")
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-rfun.R:17:3): rfun works --------------------------------------
number of items to replace is not a multiple of replacement length
Backtrace:
1. vdiffr::expect_doppelganger(...) test-rfun.R:17:2
7. mosaicCore:::makeFun.formula(...)
-- Warning (test-xpnorm.R:2:1): (code run outside of `test_that()`) ------------
there is no package called 'manipulate'
Backtrace:
1. base::require(manipulate) test-xpnorm.R:2:0
6. base::library(...)
== Failed tests ================================================================
-- Error (test-read.file.R:31:3): read.file works ------------------------------
Error: cannot open the connection
Backtrace:
x
1. \-mosaic::read.file("http://www.mosaic-web.org/go/datasets/Dome.csv") test-read.file.R:31:2
2. \-utils::read.csv(...)
3. \-utils::read.table(...)
4. \-base::file(file, "rt")
[ FAIL 1 | WARN 6 | SKIP 72 | PASS 287 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64