CRAN Package Check Results for Package netgwas

Last updated on 2024-02-25 01:49:05 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.14.2 14.47 155.10 169.57 NOTE
r-devel-linux-x86_64-debian-gcc 1.14.2 10.72 122.05 132.77 NOTE
r-devel-linux-x86_64-fedora-clang 1.14.2 205.91 OK
r-devel-linux-x86_64-fedora-gcc 1.14.2 212.55 OK
r-devel-windows-x86_64 1.14.2 11.00 132.00 143.00 OK
r-patched-linux-x86_64 1.14.2 11.99 154.80 166.79 OK
r-release-linux-x86_64 1.14.2 12.23 154.96 167.19 OK
r-release-macos-arm64 1.14.2 66.00 OK
r-release-macos-x86_64 1.14.2 98.00 OK
r-release-windows-x86_64 1.14.2 15.00 183.00 198.00 OK
r-oldrel-macos-arm64 1.14.2 64.00 OK
r-oldrel-windows-x86_64 1.14.2 15.00 173.00 188.00 OK

Check Details

Version: 1.14.2
Check: Rd files
Result: NOTE checkRd: (-1) CviCol.Rd:15: Lost braces; missing escapes or markup? 15 | The \emph{Arabidopsis thaliana} genotype data is derived from a RIL cross between Columbia-0 (Col-0) and the Cape Verde Island (Cvi-0), where 367 individuals were genotyped for 90 genetic markers. This is a diploid population with three possible genotpe states \code{(k = 3)}, where the genotypes coded as {0, 1, 2}, where 0 and 2 represent the homozygous genotypes and 1 defines the heterozygous genotype. \cr | ^ checkRd: (-1) cal.pos.Rd:25: Lost braces; missing escapes or markup? 25 | If \code{pop.typ = "RILn"} the number of generations of selfing is limited to 20 to ensure sensible input. The constructed object is returned as a R/qtl \code{cross} object with the appropriate class structure. For \code{"RILn"} populations the constructed object is given the class {"bcsft"} by using the \pkg{qtl} package conversion function \code{convert2bcsft} with arguments \code{F.gen = n} and \code{BC.gen = 0}. For \code{"ARIL"} populations the constructed object is given the class \code{"riself"}. | ^ checkRd: (-1) netgwas2cross.Rd:21: Lost braces; missing escapes or markup? 21 | If \code{pop.typ = "RILn"} the number of generations of selfing is limited to 20 to ensure sensible input. The constructed object is returned as a R/qtl \code{cross} object with the appropriate class structure. For \code{"RILn"} populations the constructed object is given the class {"bcsft"} by using the \pkg{qtl} package conversion function \code{convert2bcsft} with arguments \code{F.gen = n} and \code{BC.gen = 0}. For \code{"ARIL"} populations the constructed object is given the class \code{"riself"}. | ^ checkRd: (-1) simGeno.Rd:26: Lost braces 26 | code{con.dist = "Mt"}. The default value is 3.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc