Last updated on 2021-02-26 14:47:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 3.02 | 48.02 | 51.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 2.78 | 36.24 | 39.02 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 69.50 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 59.59 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.1.0 | 9.00 | 56.00 | 65.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 3.42 | 45.63 | 49.05 | OK | |
| r-patched-solaris-x86 | 0.1.0 | 84.10 | OK | |||
| r-release-linux-x86_64 | 0.1.0 | 3.32 | 46.35 | 49.67 | OK | |
| r-release-macos-x86_64 | 0.1.0 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.1.0 | 9.00 | 72.00 | 81.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 5.00 | 72.00 | 77.00 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘noisyr-Ex.R’ failed
The error most likely occurred in:
> ### Name: calculate_distance_matrices_transcript
> ### Title: Calcualte the distance matrices using the BAM files
> ### Aliases: calculate_distance_matrices_transcript
>
> ### ** Examples
>
> bams <- rep(system.file("extdata", "ex1.bam", package="Rsamtools", mustWork=TRUE), 2)
> genes <- data.frame("id" = 1:2,
+ "gene_id" = c("gene1", "gene2"),
+ "seqid" = c("seq1", "seq2"),
+ "start" = 1,
+ "end" = 1600)
> obj <- calculate_distance_matrices_transcript(
+ bams = bams,
+ genes = genes,
+ mapq.unique = 99
+ )
Calculating distances...
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘GenomeInfoDbData’
Calls: calculate_distance_matrices_transcript ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-oldrel-macos-x86_64