CRAN Package Check Results for Package optBiomarker

Last updated on 2017-07-17 18:46:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-27 3.39 59.64 63.03 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-27 3.38 58.21 61.59 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-27 113.33 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-27 113.72 NOTE
r-devel-windows-ix86+x86_64 1.0-27 9.00 77.00 86.00 NOTE
r-patched-linux-x86_64 1.0-27 4.15 58.67 62.82 NOTE
r-patched-solaris-x86 1.0-27 171.10 NOTE
r-release-linux-x86_64 1.0-27 3.80 58.62 62.43 NOTE
r-release-windows-ix86+x86_64 1.0-27 10.00 80.00 90.00 NOTE
r-release-osx-x86_64 1.0-27 NOTE
r-oldrel-windows-ix86+x86_64 1.0-27 10.00 76.00 86.00 NOTE
r-oldrel-osx-x86_64 1.0-27 WARN

Check Details

Version: 1.0-27
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0-27
Check: R code for possible problems
Result: NOTE
    avg2Lower: no visible global function definition for ‘optimize’
    classificationError.data.frame: no visible binding for global variable
     ‘na.omit’
    classificationError.data.frame: no visible global function definition
     for ‘terms’
    classificationError.data.frame: no visible binding for global variable
     ‘predict’
    classpredict.lda: no visible global function definition for ‘predict’
    simData: no visible global function definition for ‘rnorm’
    simData: no visible global function definition for ‘runif’
    simData: no visible global function definition for ‘var’
    tnormAvg: no visible global function definition for ‘dnorm’
    tnormAvg: no visible global function definition for ‘pnorm’
    yapprox: no visible global function definition for ‘approx’
    Undefined global functions or variables:
     approx dnorm na.omit optimize pnorm predict rnorm runif terms var
    Consider adding
     importFrom("stats", "approx", "dnorm", "na.omit", "optimize", "pnorm",
     "predict", "rnorm", "runif", "terms", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-27
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyavg2Lower: no visible global function definition for ‘optimize’
    classificationError.data.frame: no visible binding for global variable
     ‘na.omit’
    classificationError.data.frame: no visible global function definition
     for ‘terms’
    classificationError.data.frame: no visible binding for global variable
     ‘predict’
    classpredict.lda: no visible global function definition for ‘predict’
    simData: no visible global function definition for ‘rnorm’
    simData: no visible global function definition for ‘runif’
    simData: no visible global function definition for ‘var’
    tnormAvg: no visible global function definition for ‘dnorm’
    tnormAvg: no visible global function definition for ‘pnorm’
    yapprox: no visible global function definition for ‘approx’
    Undefined global functions or variables:
     approx dnorm na.omit optimize pnorm predict rnorm runif terms var
    Consider adding
     importFrom("stats", "approx", "dnorm", "na.omit", "optimize", "pnorm",
     "predict", "rnorm", "runif", "terms", "var")
    to your NAMESPACE file.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 1.0-27
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64