Last updated on 2017-07-21 08:48:13.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-7 | 2.77 | 41.81 | 44.59 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1-7 | 2.67 | 40.91 | 43.57 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1-7 | 86.89 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-7 | 82.10 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1-7 | 13.00 | 80.00 | 93.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1-7 | 3.04 | 41.13 | 44.17 | NOTE | |
| r-patched-solaris-x86 | 1.1-7 | 110.80 | NOTE | |||
| r-release-linux-x86_64 | 1.1-7 | 3.10 | 41.16 | 44.27 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.1-7 | 9.00 | 102.00 | 111.00 | NOTE | |
| r-release-osx-x86_64 | 1.1-7 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1-7 | 10.00 | 94.00 | 104.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.1-7 | NOTE |
Version: 1.1-7
Check: top-level files
Result: NOTE
Non-standard file/directory found at top level:
‘changeLog’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1-7
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to ‘survival’ which was already attached by Depends.
Please remove these calls from your code.
'library' or 'require' calls in package code:
‘CoxBoost’ ‘codetools’ ‘locfit’ ‘penalized’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1-7
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
PLL.CoxBoost PLL.coxph predictProb.CoxBoost predictProb.coxph
predictProb.survfit
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1-7
Check: R code for possible problems
Result: NOTE
PLL.CoxBoost: no visible global function definition for ‘predict’
aggregation.brier: no visible global function definition for ‘predict’
aggregation.misclass: no visible global function definition for
‘predict’
aggregation.pmpec: no visible global function definition for ‘quantile’
complexity.LASSO: no visible global function definition for ‘profL1’
complexity.ipec.CoxBoost: no visible global function definition for
‘CoxBoost’
complexity.ipec.CoxBoost: no visible global function definition for
‘locfit’
complexity.ipec.CoxBoost: no visible global function definition for
‘predict’
complexity.mincv.CoxBoost: no visible global function definition for
‘cv.CoxBoost’
complexity.ripec.CoxBoost: no visible global function definition for
‘CoxBoost’
complexity.ripec.CoxBoost: no visible global function definition for
‘locfit’
complexity.ripec.CoxBoost: no visible global function definition for
‘predict’
extract: no visible global function definition for ‘findGlobals’
fit.CoxBoost: no visible global function definition for ‘CoxBoost’
fit.LASSO: no visible global function definition for ‘penalized’
peperr: no visible global function definition for ‘glm’
peperr: no visible global function definition for ‘binomial’
peperr : sample.fun: no visible global function definition for ‘glm’
peperr : sample.fun: no visible global function definition for
‘binomial’
plot.peperr: no visible global function definition for ‘plot’
plot.peperr: no visible global function definition for ‘lines’
plot.peperr: no visible global function definition for ‘legend’
plot.peperr: no visible global function definition for ‘hist’
plot.peperr: no visible global function definition for ‘smooth.spline’
plot.peperr: no visible global function definition for ‘boxplot’
plot.peperr: no visible global function definition for ‘points’
predictProb.CoxBoost: no visible global function definition for
‘predict’
predictProb.coxph: no visible global function definition for
‘getFromNamespace’
predictProb2.CoxBoost: no visible global function definition for
‘predict’
Undefined global functions or variables:
CoxBoost binomial boxplot cv.CoxBoost findGlobals getFromNamespace
glm hist legend lines locfit penalized plot points predict profL1
quantile smooth.spline
Consider adding
importFrom("graphics", "boxplot", "hist", "legend", "lines", "plot",
"points")
importFrom("stats", "binomial", "glm", "predict", "quantile",
"smooth.spline")
importFrom("utils", "getFromNamespace")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1-7
Check: Rd line widths
Result: NOTE
Rd file 'aggregation.brier.Rd':
\usage lines wider than 90 characters:
aggregation.brier(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
Rd file 'aggregation.misclass.Rd':
\usage lines wider than 90 characters:
aggregation.misclass(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1-7
Check: compiled code
Result: NOTE
File ‘peperr/libs/peperr.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64