CRAN Package Check Results for Package photobiologyInOut

Last updated on 2020-04-04 04:50:06 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.21-1 5.53 109.37 114.90 ERROR
r-devel-linux-x86_64-debian-gcc 0.4.22 4.69 82.41 87.10 OK
r-devel-linux-x86_64-fedora-clang 0.4.22 146.50 OK
r-devel-linux-x86_64-fedora-gcc 0.4.22 143.32 OK
r-devel-windows-ix86+x86_64 0.4.22 23.00 177.00 200.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.4.21-1 12.00 97.00 109.00 OK
r-patched-linux-x86_64 0.4.22 6.36 105.56 111.92 OK
r-patched-solaris-x86 0.4.22 180.70 OK
r-release-linux-x86_64 0.4.21-1 4.57 96.80 101.37 WARN
r-release-windows-ix86+x86_64 0.4.21-1 11.00 104.00 115.00 OK
r-release-osx-x86_64 0.4.21-1 OK
r-oldrel-windows-ix86+x86_64 0.4.21-1 7.00 127.00 134.00 WARN
r-oldrel-osx-x86_64 0.4.21-1 OK

Check Details

Version: 0.4.21-1
Check: tests
Result: ERROR
     Running 'testthat.R' [7s/9s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(photobiology)
     Loading required package: tibble
     News at https://www.r4photobiology.info/
     > library(photobiologyInOut)
     >
     > test_check("photobiology")
     Read 25 items
     Read 12 items
     Read 7 items
     Read 7 items
     Read 7 items
     -- 1. Failure: colorSpec (@test-foreign.R#18) ---------------------------------
     signif(...) not equal to 38468.75.
     1/1 mismatches
     [1] 0 - 38469 == -38469
    
     -- 2. Error: colorSpec (@test-foreign.R#25) -----------------------------------
     non-numeric argument to mathematical function
     Backtrace:
     1. testthat::expect_equal(...)
     2. testthat::quasi_label(enquo(object), label, arg = "object")
     3. rlang::eval_bare(expr, quo_get_env(quo))
    
     Read 7 items
     Read 7 items
     Read 7 items
     Read 7 items
     Read 4 items
     Read 151 records
     Read 4 items
     Read 18 items
     Read 4 items
     Read 18 items
     Read 3 items
     Read 16 items
     Read 3 items
     Read 16 items
     Read 3 items
     Read 16 items
     Read 3 items
     Read 16 items
     Read 3 items
     Read 16 items
     Read 4 items
     Read 18 items
     Read 3 items
     Read 16 items
     Read 3 items
     Read 16 items
     Read 1 item
     Read 4 items
     Read 1 item
     Read 4 items
     Read 1 record
     Read 1 record
     Read 1 record
     Read 1 item
     Read 1 record
     Read 5 items
     Read 8 items
     Read 8 items
     Read 5 items
     Read 8 items
     Read 8 items
     == testthat results ===========================================================
     [ OK: 437 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 2 ]
     1. Failure: colorSpec (@test-foreign.R#18)
     2. Error: colorSpec (@test-foreign.R#25)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.21-1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'user-guide.Rmd' using rmarkdown
    Loading required package: tibble
    News at https://www.r4photobiology.info/
    
    Attaching package: 'lubridate'
    
    The following object is masked from 'package:base':
    
     date
    
    Loading required package: ggplot2
    This is colorSpec. Version: 1.2-1. Author: Glenn Davis [aut, cre]. Built: R 4.1.0; ; 2020-04-02
     13:32:00 UTC; unix
    
    Attaching package: 'colorSpec'
    
    The following object is masked from 'package:photobiology':
    
     normalize
    
    Welcome to pavo 2! Take a look at the latest features (and update your bibliography) in our recent publication: Maia R., Gruson H., Endler J. A., White T. E. (2019) pavo 2: new tools for the spectral and spatial analysis of colour in R. Methods in Ecology and Evolution, 10, 1097-1107.
    Loading required package: lattice
    Loading required package: grid
    Loading required package: xml2
    Package hyperSpec, version 0.99-20200213.1
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    
    Attaching package: 'hyperSpec'
    
    The following object is masked from 'package:colorSpec':
    
     bind
    
    Read 3 items
    Read 16 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 3 items
    Read 16 items
    Read 12 items
    Read 4 items
    Read 151 records
    Read 7 items
    Read 7 items
    Read 8 items
    Read 33 items
    Read 33 items
    Read 33 items
    Read 8 items
    Read 159 items
    Read 159 items
    Read 159 items
    Read 5 items
    Read 8 items
    Read 8 items
    Read 5 items
    Read 8 items
    Read 8 items
    Read 1 record
    Read 1 record
    Read 1 record
    Read 1 item
    Read 1 record
    Read 7 items
    Read 7 items
    Read 7 items
    Read 7 items
    Read 7 items
    Read 25 items
    Quitting from lines 1027-1029 (user-guide.Rmd)
    Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
    Assigned data `c("crown", "throat", "breast")` must be compatible with existing data.
    x Existing data has 21 rows.
    x Assigned data has 3 rows.
    i Only vectors of size 1 are recycled.
    --- failed re-building 'user-guide.Rmd'
    
    SUMMARY: processing the following file failed:
     'user-guide.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.21-1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘user-guide.Rmd’ using rmarkdown
    Loading required package: tibble
    News at https://www.r4photobiology.info/
    
    Attaching package: 'lubridate'
    
    The following object is masked from 'package:base':
    
     date
    
    Loading required package: ggplot2
    This is colorSpec. Version: 1.2-1. Author: Glenn Davis [aut, cre]. Built: R 3.6.3; ; 2020-04-01
     21:20:26 UTC; unix
    
    Attaching package: 'colorSpec'
    
    The following object is masked from 'package:photobiology':
    
     normalize
    
    Welcome to pavo 2! Take a look at the latest features (and update your bibliography) in our recent publication: Maia R., Gruson H., Endler J. A., White T. E. (2019) pavo 2: new tools for the spectral and spatial analysis of colour in R. Methods in Ecology and Evolution, 10, 1097-1107.
    Loading required package: lattice
    Loading required package: grid
    Loading required package: xml2
    Package hyperSpec, version 0.99-20200213.1
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    
    Attaching package: 'hyperSpec'
    
    The following object is masked from 'package:colorSpec':
    
     bind
    
    Read 3 items
    Read 16 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 3 items
    Read 16 items
    Read 12 items
    Read 4 items
    Read 151 records
    Read 7 items
    Read 7 items
    Read 8 items
    Read 33 items
    Read 33 items
    Read 33 items
    Read 8 items
    Read 159 items
    Read 159 items
    Read 159 items
    Read 5 items
    Read 8 items
    Read 8 items
    Read 5 items
    Read 8 items
    Read 8 items
    Read 1 record
    Read 1 record
    Read 1 record
    Read 1 item
    Read 1 record
    Read 7 items
    Read 7 items
    Read 7 items
    Read 7 items
    Read 7 items
    Read 25 items
    Quitting from lines 1027-1029 (user-guide.Rmd)
    Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
    Assigned data `c("crown", "throat", "breast")` must be compatible with existing data.
    ✖ Existing data has 21 rows.
    ✖ Assigned data has 3 rows.
    ℹ Only vectors of size 1 are recycled.
    --- failed re-building ‘user-guide.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘user-guide.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64

Version: 0.4.21-1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: tibble
    News at https://www.r4photobiology.info/
    
    Attaching package: 'lubridate'
    
    The following object is masked from 'package:base':
    
     date
    
    Loading required package: ggplot2
    This is colorSpec. Version: 1.1-1. Author: Glenn Davis [aut, cre]. Built: R 3.5.3; ; 2020-03-31
     20:51:14 UTC; windows
    
    Attaching package: 'colorSpec'
    
    The following object is masked from 'package:photobiology':
    
     normalize
    
    Welcome to pavo 2! Take a look at the latest features (and update your bibliography) in our recent publication: Maia R., Gruson H., Endler J. A., White T. E. (2019) pavo 2: new tools for the spectral and spatial analysis of colour in R. Methods in Ecology and Evolution, 10, 1097-1107.
    Loading required package: lattice
    Loading required package: grid
    Package hyperSpec, version 0.99-20180627
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    
    Attaching package: 'hyperSpec'
    
    The following object is masked from 'package:colorSpec':
    
     bind
    
    Read 3 items
    Read 16 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 4 items
    Read 18 items
    Read 3 items
    Read 16 items
    Read 12 items
    Read 4 items
    Read 151 records
    Read 7 items
    Read 7 items
    Read 8 items
    Read 33 items
    Read 33 items
    Read 33 items
    Read 8 items
    Read 159 items
    Read 159 items
    Read 159 items
    Read 5 items
    Read 8 items
    Read 8 items
    Read 5 items
    Read 8 items
    Read 8 items
    Read 1 record
    Read 1 record
    Read 1 record
    Read 1 item
    Read 1 record
    Read 7 items
    Read 7 items
    Read 7 items
    Read 7 items
    Read 7 items
    Read 25 items
    Quitting from lines 1027-1029 (user-guide.Rmd)
    Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
    Assigned data `c("crown", "throat", "breast")` must be compatible with existing data.
    x Existing data has 21 rows.
    x Assigned data has 3 rows.
    i Only vectors of size 1 are recycled.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64