CRAN Package Check Results for Package phytools

Last updated on 2024-07-14 02:54:58 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3-0 50.92 415.05 465.97 OK
r-devel-linux-x86_64-debian-gcc 2.3-0 52.19 285.08 337.27 OK
r-devel-linux-x86_64-fedora-clang 2.3-0 605.86 OK
r-devel-linux-x86_64-fedora-gcc 2.3-0 536.66 OK
r-devel-windows-x86_64 2.3-0 49.00 284.00 333.00 NOTE
r-patched-linux-x86_64 2.3-0 65.62 392.00 457.62 OK
r-release-linux-x86_64 2.3-0 62.28 388.87 451.15 OK
r-release-macos-arm64 2.3-0 134.00 OK
r-release-macos-x86_64 2.3-0 431.00 OK
r-release-windows-x86_64 2.3-0 52.00 284.00 336.00 OK
r-oldrel-macos-arm64 2.3-0 134.00 OK
r-oldrel-macos-x86_64 2.3-0 289.00 OK
r-oldrel-windows-x86_64 2.3-0 70.00 358.00 428.00 OK

Check Details

Version: 2.3-0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: add.arrow.Rd: nodelabels add.random.Rd: plot.phylo anc.Bayes.Rd: ace anc.ML.Rd: ace anc.trend.Rd: ace ancr.Rd: nodelabels bd.Rd: birthdeath bind.tip.Rd: bind.tree bind.tree.simmap.Rd: bind.tree cladelabels.Rd: nodelabels cophylo.Rd: cophyloplot describe.simmap.Rd: all.equal.phylo di2multi.simmap.Rd: di2multi, multi2di drop.tip.contMap.Rd: drop.tip, keep.tip drop.tip.multiSimmap.Rd: drop.tip, keep.tip, drop.tip.multiPhylo drop.tip.simmap.Rd: drop.tip, keep.tip, extract.clade estDiversity.Rd: ace exhaustiveMP.Rd: phyDat, parsimony, optim.parsimony, pratchet fancyTree.Rd: drop.tip, plot.phylo fastAnc.Rd: ace, pic fastMRCA.Rd: getMRCA, mrca findMRCA.Rd: mrca, vcv.phylo, getMRCA birthdeath fitMk.Rd: ace fitPagel.Rd: ace force.ultrametric.Rd: nnls.tree, is.ultrametric getCladesofSize.Rd: extract.clade getDescendants.Rd: Descendants getSisters.Rd: Siblings labelnodes.Rd: nodelabels ladderize.simmap.Rd: ladderize lambda.transform.Rd: vcv.phylo likMlambda.Rd: vcv.phylo linklabels.Rd: nodelabels, tiplabels make.simmap.Rd: ace plot.phylo,, drop.tip midpoint.root.Rd: midpoint, root modified.Grafen.Rd: compute.brlen mrp.supertree.Rd: pratchet, optim.parsimony, prop.part multiC.Rd: vcv.phylo multiRF.Rd: prop.part nodelabels.cophylo.Rd: nodelabels, edgelabels, tiplabels nni pbtree.Rd: bind.tree pgls.Ives.Rd: gls phyl.resid.Rd: gls phyl.vcv.Rd: vcv.phylo map phylomorphospace3d.Rd: scatterplot3d plotBranchbyTrait.Rd: plot.phylo plotSimmap.Rd: nodelabels, plot.phylo plotThresh.Rd: plot.phylo plotTree.Rd: plot.phylo ratebystate.Rd: pic ratebytree.Rd: ginv, ace read.newick.Rd:, read.tree, read.simmap.Rd:, read.tree reorder.backbonePhylo.Rd: reorder.phylo reorderSimmap.Rd: reorder.phylo rep.phylo.Rd: c.phylo reroot.Rd: root rerootingMethod.Rd: ace resolveNode.Rd: multi2di rotateNodes.Rd: rotate starTree.Rd: stree treeSlice.Rd: extract.clade untangle.Rd: plot.phylo, reorder.phylo, read.tree vcvPhylo.Rd: vcv.phylo writeAncestors.Rd: ace, write.tree writeNexus.Rd: Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64