CRAN Package Check Results for Package poppr

Last updated on 2021-12-04 14:52:10 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.9.3 31.53 236.10 267.63 OK
r-devel-linux-x86_64-debian-gcc 2.9.3 23.27 179.20 202.47 OK
r-devel-linux-x86_64-fedora-clang 2.9.3 322.96 WARN
r-devel-linux-x86_64-fedora-gcc 2.9.3 313.03 WARN
r-devel-windows-x86_64-new-UL 2.9.3 73.00 334.00 407.00 OK
r-devel-windows-x86_64-new-TK 2.9.3 WARN
r-devel-windows-x86_64-old 2.9.3 51.00 209.00 260.00 OK
r-patched-linux-x86_64 2.9.3 35.94 213.66 249.60 OK
r-release-linux-x86_64 2.9.3 29.03 214.06 243.09 OK
r-release-macos-arm64 2.9.3 OK
r-release-macos-x86_64 2.9.3 OK
r-release-windows-ix86+x86_64 2.9.3 70.00 382.00 452.00 OK
r-oldrel-macos-x86_64 2.9.3 OK
r-oldrel-windows-ix86+x86_64 2.9.3 70.00 391.00 461.00 OK

Check Details

Version: 2.9.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘algo.Rnw’ using knitr
    Loading required package: adegenet
    Loading required package: ade4
    
     /// adegenet 2.1.5 is loaded ////////////
    
     > overview: '?adegenet'
     > tutorials/doc/questions: 'adegenetWeb()'
     > bug reports/feature requests: adegenetIssues()
    
    
    This is poppr version 2.9.3. To get started, type package?poppr
    OMP parallel support: available
    Warning in infinite_vals_replacement(D, warning) :
     Infinite values detected.
    Error: processing vignette 'algo.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'algo.tex' failed.
    LaTeX errors:
    ! Package xcolor Error: Undefined color `fgcolor'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `fgcolor'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    --- failed re-building ‘algo.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘algo.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.9.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'algo.Rnw' using knitr
    Loading required package: adegenet
    Loading required package: ade4
    
     /// adegenet 2.1.5 is loaded ////////////
    
     > overview: '?adegenet'
     > tutorials/doc/questions: 'adegenetWeb()'
     > bug reports/feature requests: adegenetIssues()
    
    
    This is poppr version 2.9.3. To get started, type package?poppr
    OMP parallel support: available
    Warning in infinite_vals_replacement(D, warning) :
     Infinite values detected.
    Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
     running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "algo.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
    Error: processing vignette 'algo.Rnw' failed with diagnostics:
    running 'texi2dvi' on 'algo.tex' failed
    
    LaTeX errors:
    ex:546: Package xcolor Error: Undefined color `fgcolor'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ex:560: Package xcolor Error: Undefined color `fgcolor'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    
    --- failed re-building 'algo.Rnw'
    
    SUMMARY: processing the following file failed:
     'algo.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK