CRAN Package Check Results for Package rstan

Last updated on 2017-06-28 06:49:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.15.1 309.77 187.45 497.22 OK
r-devel-linux-x86_64-debian-gcc 2.15.1 489.83 205.75 695.58 OK
r-devel-linux-x86_64-fedora-clang 2.15.1 979.95 NOTE
r-devel-linux-x86_64-fedora-gcc 2.15.1 1372.51 NOTE
r-devel-windows-ix86+x86_64 2.15.1 1442.00 323.00 1765.00 NOTE
r-patched-linux-x86_64 2.15.1 520.70 193.96 714.66 OK
r-patched-solaris-sparc 2.15.1 4581.80 WARN
r-patched-solaris-x86 2.15.1 1219.30 NOTE
r-release-linux-x86_64 2.15.1 516.01 193.94 709.95 OK
r-release-windows-ix86+x86_64 2.15.1 1186.00 418.00 1604.00 NOTE
r-release-osx-x86_64 2.15.1 NOTE
r-oldrel-windows-ix86+x86_64 2.15.1 1469.00 392.00 1861.00 NOTE
r-oldrel-osx-x86_64 2.15.1 NOTE

Additional issues

gcc-UBSAN

Check Details

Version: 2.15.1
Check: installed package size
Result: NOTE
     installed size is 248.9Mb
     sub-directories of 1Mb or more:
     libs 246.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.15.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Error in file(con, "r") : cannot open the connection
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    In file included from /home/ripley/R/Lib32/BH/include/boost/config.hpp:39:0,
     from /home/ripley/R/Lib32/BH/include/boost/fusion/support/config.hpp:11,
     from /home/ripley/R/Lib32/rstan/include/boost_not_in_BH/boost/fusion/support/unused.hpp:10,
     from filed8974b6903.cpp:5:
    /home/ripley/R/Lib32/BH/include/boost/config/compiler/gcc.hpp:186:0: warning: "BOOST_NO_CXX11_RVALUE_REFERENCES" redefined
     # define BOOST_NO_CXX11_RVALUE_REFERENCES
     ^
    <command-line>:0:0: note: this is the location of the previous definition
    
     *** caught bus error ***
    address 6a1912c, cause 'invalid alignment'
    
    Traceback:
     1: .External(list(name = "CppMethod__invoke_notvoid", address = <pointer: 25b48a0>, dll = list(name = "Rcpp", path = "/home/ripley/R/Lib32/Rcpp/libs/Rcpp.so", dynamicLookup = TRUE, handle = <pointer: f9271a60>, info = <pointer: 729c20>), numParameters = -1L), <pointer: 2d7d678>, <pointer: 2813e00>, .pointer, ...)
     2: sampler$call_sampler(c(args, dotlist))
     3: .local(object, ...)
     4: optimizing(sm, data = list(y = y2, N = length(y2)), hessian = TRUE)
     5: optimizing(sm, data = list(y = y2, N = length(y2)), hessian = TRUE)
     6: eval(expr, envir, enclos)
     7: eval(expr, envir, enclos)
     8: withVisible(eval(expr, envir, enclos))
     9: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
    10: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
    11: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
    12: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
    13: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    14: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    15: block_exec(params)
    16: call_block(x)
    17: process_group.block(group)
    18: process_group(group)
    19: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    20: process_file(text, output)
    21: knit(input, text = text, envir = envir, encoding = encoding, quiet = quiet)
    22: knit2html(..., force_v1 = TRUE)
    23: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv())
    24: vweave(...)
    25: engine$weave(file, quiet = quiet, encoding = enc)
    26: doTryCatch(return(expr), name, parentenv, handler)
    27: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    28: tryCatchList(expr, classes, parentenv, handlers)
    29: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    30: buildVignettes(dir = "/home/ripley/R/packages/tests32/rstan.Rcheck/vign_test/rstan")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-sparc

Version: 2.15.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘shinystan’
Flavor: r-release-osx-x86_64

Version: 2.15.1
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘shinystan’, ‘rstanarm’
Flavor: r-release-osx-x86_64