CRAN Package Check Results for Package scDiffCom

Last updated on 2021-10-22 14:54:53 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 30.29 319.93 350.22 OK
r-devel-linux-x86_64-debian-gcc 0.1.0 26.85 264.47 291.32 OK
r-devel-linux-x86_64-fedora-clang 0.1.0 415.92 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.0 390.31 NOTE
r-devel-windows-x86_64 0.1.0 54.00 318.00 372.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.1.0 ERROR
r-patched-linux-x86_64 0.1.0 32.61 303.06 335.67 OK
r-patched-solaris-x86 0.1.0 471.00 NOTE
r-release-linux-x86_64 0.1.0 32.66 295.42 328.08 OK
r-release-macos-arm64 0.1.0 NOTE
r-release-macos-x86_64 0.1.0 NOTE
r-release-windows-ix86+x86_64 0.1.0 46.00 265.00 311.00 OK
r-oldrel-macos-x86_64 0.1.0 NOTE
r-oldrel-windows-ix86+x86_64 0.1.0 69.00 237.00 306.00 ERROR

Check Details

Version: 0.1.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'ontoProc', 'SingleCellSignalR'
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘future’ ‘utils’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.0
Check: package dependencies
Result: ERROR
    Package required but not available: 'Seurat'
    
    Packages suggested but not available for checking:
     'igraph', 'ontoProc', 'SingleCellSignalR'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.1.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'KEGGREST', 'ontoProc', 'SingleCellSignalR'
Flavor: r-oldrel-macos-x86_64

Version: 0.1.0
Check: data for non-ASCII characters
Result: WARN
     Error loading dataset 'seurat_sample_tms_liver':
     Error in .requirePackage(package) :
     unable to find required package 'SeuratObject'
    
     The dataset(s) may use package(s) not declared in Depends/Imports.
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'spelling.R' [0s]
     Running 'testthat.R' [10s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(scDiffCom)
     >
     > test_check("scDiffCom")
     Loading required package: SeuratObject
     Error: package or namespace load failed for 'SeuratObject' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
     namespace 'Matrix' 1.3-2 is already loaded, but >= 1.3.3 is required
     == Failed tests ================================================================
     -- Error (test-everything.R:165:5): sample object is of class Seurat -----------
     Error in `.requirePackage(package)`: unable to find required package 'SeuratObject'
     Backtrace:
     x
     1. \-testthat::expect_s4_class(seurat_test, "Seurat") test-everything.R:165:4
     2. +-testthat:::format_class(methods::is(object))
     3. | +-base::paste0(encodeString(x, quote = "'"), collapse = "/")
     4. | \-base::encodeString(x, quote = "'")
     5. \-methods::is(object)
     6. \-methods::extends(class1)
     7. \-methods::getClassDef(class1)
     8. \-methods:::.requirePackage(package)
     -- Error (test-everything.R:171:1): (code run outside of `test_that()`) --------
     Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: namespace 'Matrix' 1.3-2 is already loaded, but >= 1.3.3 is required
     Backtrace:
     x
     1. \-base::lapply(...) test-everything.R:171:0
     2. \-scDiffCom:::FUN(X[[i]], ...)
     3. \-scDiffCom:::extract_analysis_inputs(...) test-everything.R:174:4
     4. \-scDiffCom:::extract_seurat_inputs(...)
     5. \-Seurat::GetAssayData
     6. \-base::getExportedValue(pkg, name)
     7. \-base::asNamespace(ns)
     8. \-base::getNamespace(ns)
     9. \-base::loadNamespace(name)
     10. +-base::namespaceImportFrom(...)
     11. | \-base::asNamespace(ns)
     12. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
     13. +-base::namespaceImportFrom(...)
     14. | \-base::asNamespace(ns)
     15. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
    
     [ FAIL 2 | WARN 0 | SKIP 0 | PASS 5 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64