CRAN Package Check Results for Package surveillance

Last updated on 2020-02-25 11:50:12 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.17.3 76.62 484.50 561.12 ERROR
r-devel-linux-x86_64-debian-gcc 1.17.3 57.43 424.42 481.85 NOTE
r-devel-linux-x86_64-fedora-clang 1.17.3 785.50 NOTE
r-devel-linux-x86_64-fedora-gcc 1.17.3 749.16 OK
r-devel-windows-ix86+x86_64 1.17.3 112.00 744.00 856.00 NOTE --no-vignettes
r-devel-windows-ix86+x86_64-gcc8 1.17.3 109.00 611.00 720.00 NOTE --no-vignettes
r-patched-linux-x86_64 1.17.3 65.15 504.38 569.53 NOTE
r-patched-solaris-x86 1.17.3 885.10 NOTE
r-release-linux-x86_64 1.17.3 65.34 508.04 573.38 NOTE
r-release-windows-ix86+x86_64 1.17.3 114.00 581.00 695.00 NOTE --no-vignettes
r-release-osx-x86_64 1.17.3 NOTE
r-oldrel-windows-ix86+x86_64 1.17.3 115.00 527.00 642.00 NOTE --no-vignettes
r-oldrel-osx-x86_64 1.17.3 NOTE

Check Details

Version: 1.17.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'INLA'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.17.3
Check: examples
Result: ERROR
    Running examples in 'surveillance-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: epidata_plot
    > ### Title: Plotting the Evolution of an Epidemic
    > ### Aliases: plot.epidata plot.summary.epidata stateplot
    > ### Keywords: hplot methods spatial
    >
    > ### ** Examples
    >
    > data("hagelloch")
    > (s <- summary(hagelloch))
    
    AN SIR EPIDEMIC
     Time range: 0 -- 92.5452383686788
     Number of individuals: 188
     1 initially infected individuals:
     "184"
     0 never infected individuals
     Size of the epidemic: 187
    
    $ counters ('data.frame', 376 x 6 ): evolution of the epidemic:
     time type id nSusceptible nInfectious nRemoved
    1 0.000000 187 1 0
    2 1.136356 I 173 186 2 0
    3 7.197762 R 173 186 1 1
     [....]
    375 85.688298 I 141 0 1 187
    376 92.545238 R 141 0 0 188
    
    >
    > # rudimentary stateplot
    > stateplot(s, id = "187")
    Warning in xy.coords(x, y, setLab = FALSE) : NAs introduced by coercion
    Error in approxfun(x, y[-if (right) n1 else 1], method = "constant", yleft = y[1L], :
     zero non-NA points
    Calls: stateplot -> stepfun -> approxfun
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.17.3
Check: installed package size
Result: NOTE
     installed size is 8.3Mb
     sub-directories of 1Mb or more:
     R 1.8Mb
     doc 2.3Mb
     libs 1.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.17.3
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 8.3Mb
     sub-directories of 1Mb or more:
     R 1.8Mb
     doc 2.3Mb
     help 1.0Mb
     libs 1.7Mb
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.17.3
Flags: --no-vignettes
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: 'grDevices::hcl.colors'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.17.3
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: ‘grDevices::hcl.colors’
Flavor: r-oldrel-osx-x86_64